Wall clock time and date at job start Mon Mar 30 2020 20:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47261 * 2 1 4 4 N 1.46503 * 109.47460 * 240.00178 * 2 1 3 5 5 C 1.34768 * 119.99956 * 84.99909 * 4 2 1 6 6 O 1.21283 * 120.00153 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99792 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.46977 * 180.02562 * 7 5 4 9 9 C 1.37637 * 120.12547 * 264.99579 * 8 7 5 10 10 C 1.38611 * 120.25133 * 180.30203 * 9 8 7 11 11 C 1.38661 * 120.49834 * 359.43795 * 10 9 8 12 12 C 1.37598 * 120.24462 * 0.56532 * 11 10 9 13 13 C 1.40693 * 120.13116 * 85.02206 * 8 7 5 14 14 C 1.41397 * 120.24389 * 359.95203 * 13 8 7 15 15 H 1.08003 * 119.99955 * 334.08061 * 14 13 8 16 16 C 1.39940 * 120.00210 * 154.08724 * 14 13 8 17 17 N 1.30822 * 119.99912 * 343.62218 * 16 14 13 18 18 Si 1.86803 * 120.00192 * 163.63321 * 16 14 13 19 19 H 1.48496 * 109.47262 * 59.99447 * 18 16 14 20 20 H 1.48504 * 109.47090 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46694 * 299.99081 * 18 16 14 22 22 C 1.50698 * 109.47026 * 119.99820 * 2 1 3 23 23 N 1.34780 * 120.00451 * 300.00436 * 22 2 1 24 24 O 1.21290 * 120.00069 * 120.00106 * 22 2 1 25 25 H 1.09005 * 109.46833 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47432 * 299.99637 * 1 2 3 27 27 H 1.09002 * 109.47051 * 59.99971 * 1 2 3 28 28 H 0.97001 * 119.99456 * 265.00534 * 4 2 1 29 29 H 1.08998 * 109.47152 * 59.99513 * 7 5 4 30 30 H 1.09003 * 109.46597 * 299.99418 * 7 5 4 31 31 H 1.08001 * 119.87531 * 0.02562 * 9 8 7 32 32 H 1.07996 * 119.75611 * 179.70394 * 10 9 8 33 33 H 1.07998 * 119.87738 * 180.30536 * 11 10 9 34 34 H 1.08001 * 120.12776 * 179.74520 * 12 11 10 35 35 H 0.97001 * 120.00439 * 179.97438 * 17 16 14 36 36 H 0.97004 * 119.99273 * 359.97438 * 23 22 2 37 37 H 0.96999 * 120.00087 * 179.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8591 1.1587 -2.4114 7 6 2.6490 -0.7288 -3.5877 8 6 2.7004 0.2398 -4.7411 9 6 1.6454 0.3227 -5.6211 10 6 1.6926 1.2081 -6.6865 11 6 2.7955 2.0278 -6.8719 12 6 3.8617 1.9619 -6.0047 13 6 3.8273 1.0624 -4.9229 14 6 4.9169 0.9863 -4.0249 15 1 4.7586 0.6493 -3.0111 16 6 6.2003 1.3478 -4.4498 17 7 6.4630 1.4452 -5.7277 18 14 7.5384 1.6908 -3.1923 19 1 7.7627 0.4784 -2.3648 20 1 8.7968 2.0502 -3.8942 21 1 7.1197 2.8162 -2.3186 22 6 2.0323 -0.7104 1.2305 23 7 1.7066 -0.2500 2.4546 24 8 2.7296 -1.6965 1.1192 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.2490 -1.6318 -1.1526 29 1 1.9762 -1.5506 -3.8325 30 1 3.6482 -1.1212 -3.3985 31 1 0.7794 -0.3078 -5.4836 32 1 0.8623 1.2632 -7.3749 33 1 2.8196 2.7176 -7.7026 34 1 4.7216 2.5982 -6.1533 35 1 7.3525 1.6961 -6.0223 36 1 1.1492 0.5389 2.5436 37 1 2.0297 -0.7075 3.2466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776755051.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:06 Heat of formation + Delta-G solvation = -67.006448 kcal Electronic energy + Delta-G solvation = -21134.325149 eV Core-core repulsion = 17875.686757 eV Total energy + Delta-G solvation = -3258.638392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16445 -38.80208 -37.25763 -34.67601 -33.90202 -33.56808 -31.80758 -30.19503 -29.38646 -26.71632 -25.07114 -24.45021 -21.05773 -20.84774 -20.09860 -19.38387 -18.02060 -17.13997 -16.96807 -15.88908 -15.66942 -15.24329 -15.09542 -14.52677 -14.38384 -13.80131 -13.58717 -13.33396 -13.06506 -12.59829 -12.51007 -12.43961 -11.71009 -11.67000 -11.51152 -11.11226 -10.96634 -10.93045 -10.64390 -10.35712 -10.08889 -9.94202 -9.43478 -9.32983 -9.18562 -9.10169 -8.80260 -7.26318 -7.24147 -6.68615 -4.29049 2.41803 2.82792 2.96613 3.09812 3.14055 3.17952 3.32759 3.37036 3.75104 3.98699 4.60980 4.71288 4.98434 5.11029 5.36679 5.56488 5.73164 5.86989 6.03365 6.09377 6.19134 6.33590 6.49448 6.51612 6.55938 6.68769 6.85677 7.07314 7.14310 7.34644 7.47396 7.69206 7.91693 7.98765 8.02488 8.12947 8.18051 8.36963 8.70065 8.85529 8.97109 9.06754 10.25613 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.015168 B = 0.006126 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.530625 B = 4569.263509 C = 6017.697429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 H 0.114 0.886 4 N -0.729 5.729 5 C 0.519 3.481 6 O -0.522 6.522 7 C -0.070 4.070 8 C -0.181 4.181 9 C -0.080 4.080 10 C -0.240 4.240 11 C -0.107 4.107 12 C -0.159 4.159 13 C 0.129 3.871 14 C -0.457 4.457 15 H 0.074 0.926 16 C 0.078 3.922 17 N -0.795 5.795 18 Si 0.902 3.098 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.265 1.265 22 C 0.516 3.484 23 N -0.852 5.852 24 O -0.537 6.537 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.406 0.594 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.280 0.720 36 H 0.403 0.597 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.873 -2.992 12.195 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.015 3.985 3 H 0.131 0.869 4 N -0.386 5.386 5 C 0.307 3.693 6 O -0.395 6.395 7 C -0.109 4.109 8 C -0.183 4.183 9 C -0.099 4.099 10 C -0.260 4.260 11 C -0.126 4.126 12 C -0.179 4.179 13 C 0.127 3.873 14 C -0.486 4.486 15 H 0.092 0.908 16 C -0.140 4.140 17 N -0.421 5.421 18 Si 0.727 3.273 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.189 1.189 22 C 0.301 3.699 23 N -0.417 5.417 24 O -0.413 6.413 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.242 0.758 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.091 0.909 36 H 0.232 0.768 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.426 -2.699 11.692 14.112 hybrid contribution 0.647 -0.009 1.023 1.210 sum -6.779 -2.709 12.715 14.662 Atomic orbital electron populations 1.22139 0.93252 1.02799 1.03458 1.20642 0.95363 0.98483 0.84055 0.86869 1.45970 1.69630 1.14616 1.08346 1.21300 0.76346 0.87624 0.83982 1.90670 1.48269 1.15884 1.84717 1.20260 1.02259 0.97506 0.90924 1.19049 0.98307 1.02498 0.98427 1.20292 0.96065 0.98134 0.95386 1.20295 0.99425 1.04489 1.01763 1.20672 0.94693 0.98704 0.98494 1.21282 0.97933 1.00989 0.97655 1.17328 0.90690 0.88011 0.91268 1.19452 0.91517 1.39300 0.98365 0.90820 1.25864 0.99963 0.92640 0.95502 1.69811 1.22527 1.34520 1.15235 0.86466 0.79398 0.80072 0.81400 1.19013 1.20338 1.18935 1.20810 0.79357 0.84285 0.85496 1.43784 1.56103 1.33931 1.07838 1.90750 1.37441 1.26361 1.86718 0.91995 0.91591 0.90390 0.75840 0.90446 0.88381 0.89766 0.89711 0.89631 0.86582 0.90942 0.76824 0.76680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.38 37.16 0.35 -1.27 16 2 C 0.12 1.60 2.98 -69.08 -0.21 1.39 16 3 H 0.11 1.57 7.58 -51.93 -0.39 1.18 16 4 N -0.73 -11.36 4.95 -54.93 -0.27 -11.63 16 5 C 0.52 10.18 7.43 -10.99 -0.08 10.10 16 6 O -0.52 -12.12 15.70 5.55 0.09 -12.03 16 7 C -0.07 -1.40 5.18 -29.03 -0.15 -1.55 16 8 C -0.18 -4.41 4.43 -103.91 -0.46 -4.87 16 9 C -0.08 -1.87 9.66 -39.66 -0.38 -2.26 16 10 C -0.24 -5.64 10.05 -39.29 -0.39 -6.04 16 11 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 12 C -0.16 -4.31 8.68 -38.87 -0.34 -4.64 16 13 C 0.13 3.51 5.56 -106.83 -0.59 2.91 16 14 C -0.46 -12.26 8.14 -37.74 -0.31 -12.57 16 15 H 0.07 1.94 6.68 -52.48 -0.35 1.59 16 16 C 0.08 1.99 5.16 -17.34 -0.09 1.90 16 17 N -0.80 -20.87 10.97 55.55 0.61 -20.26 16 18 Si 0.90 19.40 29.59 -169.99 -5.03 14.37 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 22 C 0.52 6.22 7.49 -10.98 -0.08 6.13 16 23 N -0.85 -6.22 8.77 31.22 0.27 -5.95 16 24 O -0.54 -8.52 16.67 5.55 0.09 -8.43 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.46 7.56 -51.93 -0.39 0.07 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.41 5.84 7.79 -40.82 -0.32 5.52 16 29 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 30 H 0.10 1.99 7.06 -51.93 -0.37 1.62 16 31 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 34 H 0.12 3.22 6.22 -52.49 -0.33 2.89 16 35 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 36 H 0.40 1.80 8.25 -40.82 -0.34 1.46 16 37 H 0.40 2.45 8.93 -40.82 -0.36 2.08 16 LS Contribution 319.01 15.07 4.81 4.81 Total: -1.00 -33.28 319.01 -7.08 -40.36 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -4.51 Total: 12.54 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -3.14 Total: -13.79 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.61 Total: -37.83 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.18 Total: -20.46 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.28 -7.08 -40.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776755051.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.645 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds