Wall clock time and date at job start Mon Mar 30 2020 20:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47261 * 2 1 4 4 N 1.46503 * 109.47460 * 240.00178 * 2 1 3 5 5 C 1.34768 * 119.99956 * 84.99909 * 4 2 1 6 6 O 1.21283 * 120.00153 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99792 * 180.02562 * 5 4 2 8 8 C 1.50701 * 109.46977 * 180.02562 * 7 5 4 9 9 C 1.37637 * 120.12547 * 264.99579 * 8 7 5 10 10 C 1.38611 * 120.25133 * 180.30203 * 9 8 7 11 11 C 1.38661 * 120.49834 * 359.43795 * 10 9 8 12 12 C 1.37598 * 120.24462 * 0.56532 * 11 10 9 13 13 C 1.40693 * 120.13116 * 85.02206 * 8 7 5 14 14 C 1.41397 * 120.24389 * 359.95203 * 13 8 7 15 15 H 1.08003 * 119.99955 * 334.08061 * 14 13 8 16 16 C 1.39940 * 120.00210 * 154.08724 * 14 13 8 17 17 N 1.30822 * 119.99912 * 343.62218 * 16 14 13 18 18 Si 1.86803 * 120.00192 * 163.63321 * 16 14 13 19 19 H 1.48496 * 109.47262 * 59.99447 * 18 16 14 20 20 H 1.48504 * 109.47090 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46694 * 299.99081 * 18 16 14 22 22 C 1.50698 * 109.47026 * 119.99820 * 2 1 3 23 23 N 1.34780 * 120.00451 * 300.00436 * 22 2 1 24 24 O 1.21290 * 120.00069 * 120.00106 * 22 2 1 25 25 H 1.09005 * 109.46833 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47432 * 299.99637 * 1 2 3 27 27 H 1.09002 * 109.47051 * 59.99971 * 1 2 3 28 28 H 0.97001 * 119.99456 * 265.00534 * 4 2 1 29 29 H 1.08998 * 109.47152 * 59.99513 * 7 5 4 30 30 H 1.09003 * 109.46597 * 299.99418 * 7 5 4 31 31 H 1.08001 * 119.87531 * 0.02562 * 9 8 7 32 32 H 1.07996 * 119.75611 * 179.70394 * 10 9 8 33 33 H 1.07998 * 119.87738 * 180.30536 * 11 10 9 34 34 H 1.08001 * 120.12776 * 179.74520 * 12 11 10 35 35 H 0.97001 * 120.00439 * 179.97438 * 17 16 14 36 36 H 0.97004 * 119.99273 * 359.97438 * 23 22 2 37 37 H 0.96999 * 120.00087 * 179.97438 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8591 1.1587 -2.4114 7 6 2.6490 -0.7288 -3.5877 8 6 2.7004 0.2398 -4.7411 9 6 1.6454 0.3227 -5.6211 10 6 1.6926 1.2081 -6.6865 11 6 2.7955 2.0278 -6.8719 12 6 3.8617 1.9619 -6.0047 13 6 3.8273 1.0624 -4.9229 14 6 4.9169 0.9863 -4.0249 15 1 4.7586 0.6493 -3.0111 16 6 6.2003 1.3478 -4.4498 17 7 6.4630 1.4452 -5.7277 18 14 7.5384 1.6908 -3.1923 19 1 7.7627 0.4784 -2.3648 20 1 8.7968 2.0502 -3.8942 21 1 7.1197 2.8162 -2.3186 22 6 2.0323 -0.7104 1.2305 23 7 1.7066 -0.2500 2.4546 24 8 2.7296 -1.6965 1.1192 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.2490 -1.6318 -1.1526 29 1 1.9762 -1.5506 -3.8325 30 1 3.6482 -1.1212 -3.3985 31 1 0.7794 -0.3078 -5.4836 32 1 0.8623 1.2632 -7.3749 33 1 2.8196 2.7176 -7.7026 34 1 4.7216 2.5982 -6.1533 35 1 7.3525 1.6961 -6.0223 36 1 1.1492 0.5389 2.5436 37 1 2.0297 -0.7075 3.2466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776755051.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:06 Heat of formation + Delta-G solvation = -91.974777 kcal Electronic energy + Delta-G solvation = -21135.407857 eV Core-core repulsion = 17875.686757 eV Total energy + Delta-G solvation = -3259.721100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.34129 -40.22014 -39.02790 -35.92357 -35.49097 -34.82476 -33.50257 -31.48851 -31.24061 -28.38951 -26.87413 -25.56172 -22.81545 -22.41470 -21.26738 -21.02260 -19.15516 -18.89041 -18.18146 -17.31112 -17.02663 -16.67353 -16.42094 -16.08725 -15.91381 -15.35500 -15.06412 -14.82739 -14.48559 -14.36253 -13.74753 -13.51379 -13.36920 -13.31079 -12.91559 -12.76367 -12.73240 -12.54028 -12.47458 -12.12046 -11.30718 -11.21590 -11.11378 -11.02804 -10.79532 -10.73353 -10.11930 -9.20891 -9.14781 -8.59376 -6.28759 1.00530 1.14877 1.34061 1.44090 1.46596 1.53439 1.78871 2.10490 2.19286 2.64341 2.79219 3.74310 3.83701 4.01478 4.12718 4.20363 4.42364 4.46433 4.62905 4.66767 4.73496 4.81918 4.84114 5.08128 5.20015 5.21010 5.38585 5.45101 5.56375 5.78677 5.83145 6.05447 6.18067 6.23395 6.33192 6.43825 6.59686 6.75665 7.00265 7.12471 7.22279 7.38792 8.36960 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.015168 B = 0.006126 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.530625 B = 4569.263509 C = 6017.697429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.117 3.883 3 H 0.102 0.898 4 N -0.717 5.717 5 C 0.524 3.476 6 O -0.565 6.565 7 C -0.071 4.071 8 C -0.187 4.187 9 C -0.089 4.089 10 C -0.241 4.241 11 C -0.117 4.117 12 C -0.193 4.193 13 C 0.096 3.904 14 C -0.484 4.484 15 H 0.068 0.932 16 C 0.038 3.962 17 N -0.825 5.825 18 Si 0.967 3.033 19 H -0.259 1.259 20 H -0.264 1.264 21 H -0.268 1.268 22 C 0.520 3.480 23 N -0.825 5.825 24 O -0.580 6.580 25 H 0.070 0.930 26 H 0.103 0.897 27 H 0.056 0.944 28 H 0.413 0.587 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.286 0.714 36 H 0.420 0.580 37 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.145 -3.686 13.846 16.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.009 3.991 3 H 0.120 0.880 4 N -0.372 5.372 5 C 0.312 3.688 6 O -0.443 6.443 7 C -0.110 4.110 8 C -0.189 4.189 9 C -0.107 4.107 10 C -0.260 4.260 11 C -0.135 4.135 12 C -0.212 4.212 13 C 0.094 3.906 14 C -0.514 4.514 15 H 0.086 0.914 16 C -0.177 4.177 17 N -0.452 5.452 18 Si 0.789 3.211 19 H -0.183 1.183 20 H -0.188 1.188 21 H -0.193 1.193 22 C 0.304 3.696 23 N -0.390 5.390 24 O -0.459 6.459 25 H 0.089 0.911 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.250 0.750 29 H 0.131 0.869 30 H 0.110 0.890 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.252 0.748 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -8.733 -3.399 13.398 16.350 hybrid contribution 0.905 0.191 0.522 1.062 sum -7.828 -3.208 13.920 16.289 Atomic orbital electron populations 1.22092 0.90813 1.03616 1.04269 1.20868 0.97238 0.97603 0.83433 0.88007 1.45793 1.68326 1.14835 1.08234 1.21044 0.75974 0.86939 0.84837 1.90651 1.50595 1.17511 1.85497 1.20275 1.02971 0.97585 0.90213 1.19511 0.97586 1.02185 0.99599 1.20730 0.96784 0.98395 0.94839 1.20724 0.99645 1.03469 1.02119 1.20956 0.94526 0.99389 0.98649 1.21288 0.98540 1.01999 0.99376 1.17711 0.92104 0.88985 0.91789 1.19578 0.92516 1.41106 0.98208 0.91418 1.26616 1.01769 0.92042 0.97273 1.69868 1.23377 1.35163 1.16751 0.85477 0.76999 0.79735 0.78897 1.18344 1.18838 1.19331 1.20594 0.78994 0.83683 0.86329 1.43541 1.54909 1.33903 1.06615 1.90742 1.39560 1.28282 1.87333 0.91111 0.87854 0.92529 0.75017 0.86879 0.89002 0.86405 0.86554 0.87622 0.88571 0.90348 0.74810 0.75396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.38 71.98 0.68 -2.04 16 2 C 0.12 2.86 2.98 44.24 0.13 2.99 16 3 H 0.10 2.77 7.58 -2.39 -0.02 2.75 16 4 N -0.72 -21.74 4.95 -446.10 -2.21 -23.95 16 5 C 0.52 20.42 7.43 87.66 0.65 21.07 16 6 O -0.56 -26.54 15.70 -3.04 -0.05 -26.59 16 7 C -0.07 -2.82 5.18 29.10 0.15 -2.67 16 8 C -0.19 -9.13 4.43 -19.41 -0.09 -9.22 16 9 C -0.09 -4.03 9.66 22.22 0.21 -3.82 16 10 C -0.24 -10.94 10.05 22.46 0.23 -10.72 16 11 C -0.12 -5.79 10.02 22.22 0.22 -5.56 16 12 C -0.19 -10.77 8.68 22.73 0.20 -10.57 16 13 C 0.10 5.37 5.56 -21.29 -0.12 5.25 16 14 C -0.48 -26.89 8.14 23.46 0.19 -26.70 16 15 H 0.07 3.70 6.68 -2.91 -0.02 3.68 16 16 C 0.04 1.97 5.16 85.26 0.44 2.41 16 17 N -0.83 -44.67 10.97 21.82 0.24 -44.43 16 18 Si 0.97 40.50 29.59 68.60 2.03 42.53 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 22 C 0.52 11.53 7.49 87.66 0.66 12.19 16 23 N -0.82 -9.64 8.77 -173.52 -1.52 -11.17 16 24 O -0.58 -17.69 16.67 -3.06 -0.05 -17.74 16 25 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.10 1.08 7.56 -2.39 -0.02 1.06 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.41 11.46 7.79 -92.71 -0.72 10.74 16 29 H 0.11 3.58 8.05 -2.39 -0.02 3.56 16 30 H 0.09 3.76 7.06 -2.39 -0.02 3.74 16 31 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 34 H 0.10 5.63 6.22 -2.91 -0.02 5.61 16 35 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 36 H 0.42 2.26 8.25 -92.71 -0.76 1.49 16 37 H 0.41 3.80 8.93 -92.71 -0.83 2.97 16 Total: -1.00 -74.66 319.01 0.81 -73.85 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: -1.18 Total: 34.87 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: 3.55 Total: -27.37 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -3.49 Total: -79.55 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.10 Total: -44.33 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -74.66 0.81 -73.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776755051.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.126 kcal (2) G-P(sol) polarization free energy of solvation -74.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds