Wall clock time and date at job start Mon Mar 30 2020 20:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46907 * 109.47136 * 2 1 4 4 C 1.48319 * 110.98111 * 288.93967 * 3 2 1 5 5 C 1.51310 * 104.79836 * 267.35640 * 4 3 2 6 6 O 1.21279 * 125.75275 * 163.26465 * 5 4 3 7 7 N 1.34856 * 108.49989 * 343.28483 * 5 4 3 8 8 C 1.46801 * 109.58846 * 359.57484 * 7 5 4 9 9 H 1.09010 * 110.11421 * 258.36167 * 8 7 5 10 10 C 1.50692 * 110.11920 * 136.76868 * 8 7 5 11 11 C 1.38332 * 119.96778 * 144.53980 * 10 8 7 12 12 C 1.38279 * 120.13888 * 180.02562 * 11 10 8 13 13 C 1.38123 * 120.06905 * 0.02562 * 12 11 10 14 14 C 1.38861 * 119.92999 * 0.22838 * 13 12 11 15 15 O 1.35750 * 120.06701 * 179.72595 * 14 13 12 16 16 C 1.34837 * 117.00068 * 5.64968 * 15 14 13 17 17 H 1.07998 * 119.99661 * 354.93112 * 16 15 14 18 18 C 1.38652 * 120.00039 * 174.93244 * 16 15 14 19 19 N 1.31558 * 120.00113 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99802 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47344 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47127 * 120.00006 * 20 18 16 23 23 H 1.48502 * 109.46706 * 239.99570 * 20 18 16 24 24 C 1.38074 * 119.96644 * 324.56086 * 10 8 7 25 25 H 1.09001 * 109.47401 * 300.00365 * 1 2 3 26 26 H 1.09002 * 109.46755 * 60.00460 * 1 2 3 27 27 H 1.08989 * 109.46971 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47401 * 239.99634 * 2 1 3 29 29 H 1.09002 * 109.46755 * 119.99540 * 2 1 3 30 30 H 1.09004 * 110.32637 * 148.54409 * 4 3 2 31 31 H 1.08998 * 110.50362 * 26.26074 * 4 3 2 32 32 H 0.96999 * 125.20288 * 179.60609 * 7 5 4 33 33 H 1.08000 * 119.92677 * 359.97438 * 11 10 8 34 34 H 1.07996 * 119.96397 * 179.97438 * 12 11 10 35 35 H 1.07995 * 120.03362 * 179.97438 * 13 12 11 36 36 H 0.96991 * 120.00311 * 180.02562 * 19 18 16 37 37 H 1.07997 * 120.03430 * 0.02562 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7729 2.0356 -1.3099 5 6 3.0402 1.8011 -2.1027 6 8 3.1555 1.9151 -3.3046 7 7 4.0199 1.4436 -1.2476 8 6 3.4947 1.4263 0.1231 9 1 3.8015 2.3278 0.6536 10 6 3.9884 0.2033 0.8520 11 6 4.2826 0.2750 2.2017 12 6 4.7365 -0.8449 2.8739 13 6 4.8979 -2.0391 2.1989 14 6 4.6085 -2.1131 0.8428 15 8 4.7714 -3.2839 0.1755 16 6 5.1044 -4.3653 0.9088 17 1 5.3095 -4.2599 1.9639 18 6 5.1835 -5.6126 0.3084 19 7 4.9331 -5.7410 -0.9768 20 14 5.6441 -7.1108 1.3245 21 1 5.8739 -6.7017 2.7334 22 1 4.5412 -8.1037 1.2704 23 1 6.8839 -7.7178 0.7772 24 6 4.1472 -0.9878 0.1718 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6012 3.1036 -1.1758 31 1 0.9213 1.5749 -1.8105 32 1 4.9321 1.2309 -1.4997 33 1 4.1584 1.2080 2.7314 34 1 4.9657 -0.7856 3.9276 35 1 5.2528 -2.9133 2.7244 36 1 4.9880 -6.6136 -1.3967 37 1 3.9180 -1.0431 -0.8822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788690705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:10 Heat of formation + Delta-G solvation = -35.976524 kcal Electronic energy + Delta-G solvation = -21490.563422 eV Core-core repulsion = 18233.270589 eV Total energy + Delta-G solvation = -3257.292833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.28175 -40.63243 -38.93698 -37.68233 -35.03630 -34.32922 -32.48320 -31.19599 -30.75313 -28.40480 -27.30914 -25.44308 -23.28601 -23.17458 -21.99237 -21.54653 -19.68048 -18.93240 -18.27535 -17.55414 -16.88143 -16.53234 -16.29679 -16.14975 -16.05711 -15.82950 -15.47720 -15.03176 -14.84002 -14.47704 -14.10710 -14.03246 -13.53898 -13.26322 -13.06653 -12.81958 -12.65329 -12.60694 -12.42920 -12.29147 -12.11557 -11.88644 -11.53505 -11.21205 -10.85085 -10.44266 -9.96374 -9.66002 -9.03955 -8.49717 -6.18554 0.36940 0.70542 1.33606 1.35282 1.41639 1.51859 2.14534 2.17502 2.57064 2.87889 3.13792 3.25964 3.39522 3.66640 3.89863 4.07968 4.12403 4.31913 4.37007 4.41043 4.52553 4.55442 4.62264 4.70392 4.80444 4.93384 4.97678 5.09412 5.16693 5.22071 5.34907 5.46365 5.61386 5.64523 5.70850 5.82724 5.94701 5.99858 6.15027 6.95322 7.01783 7.76238 8.73743 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.021437 B = 0.004918 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.817758 B = 5691.641229 C = 6048.179338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.031 3.969 3 N -0.471 5.471 4 C 0.006 3.994 5 C 0.489 3.511 6 O -0.576 6.576 7 N -0.740 5.740 8 C 0.326 3.674 9 H 0.151 0.849 10 C -0.065 4.065 11 C -0.157 4.157 12 C -0.068 4.068 13 C -0.234 4.234 14 C 0.110 3.890 15 O -0.236 6.236 16 C -0.410 4.410 17 H 0.104 0.896 18 C -0.025 4.025 19 N -0.923 5.923 20 Si 1.018 2.982 21 H -0.248 1.248 22 H -0.270 1.270 23 H -0.271 1.271 24 C -0.177 4.177 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.013 0.987 29 H 0.078 0.922 30 H 0.157 0.843 31 H 0.116 0.884 32 H 0.417 0.583 33 H 0.162 0.838 34 H 0.152 0.848 35 H 0.118 0.882 36 H 0.271 0.729 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.503 14.646 8.743 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 N -0.196 5.196 4 C -0.125 4.125 5 C 0.275 3.725 6 O -0.455 6.455 7 N -0.397 5.397 8 C 0.134 3.866 9 H 0.168 0.832 10 C -0.067 4.067 11 C -0.176 4.176 12 C -0.086 4.086 13 C -0.253 4.253 14 C 0.060 3.940 15 O -0.143 6.143 16 C -0.486 4.486 17 H 0.122 0.878 18 C -0.222 4.222 19 N -0.562 5.562 20 Si 0.838 3.162 21 H -0.171 1.171 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.197 4.197 25 H 0.098 0.902 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.096 0.904 30 H 0.174 0.826 31 H 0.134 0.866 32 H 0.257 0.743 33 H 0.179 0.821 34 H 0.169 0.831 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.874 14.801 8.223 17.922 hybrid contribution 1.297 -1.972 -1.014 2.569 sum -4.577 12.829 7.209 15.411 Atomic orbital electron populations 1.21753 0.92436 1.02198 1.03447 1.22524 0.97771 0.88674 1.00763 1.66055 1.08293 1.16742 1.28459 1.23432 0.95344 1.05232 0.88448 1.22135 0.88932 0.74819 0.86614 1.90732 1.85280 1.54458 1.15048 1.47115 1.14027 1.69075 1.09482 1.21835 0.86371 0.97050 0.81387 0.83169 1.19604 0.99603 0.92441 0.95013 1.20969 1.03913 0.99978 0.92745 1.21189 0.95933 0.91000 1.00481 1.21389 1.09332 1.00618 0.93971 1.19837 0.94485 0.87377 0.92278 1.83953 1.78566 1.15060 1.36733 1.21857 1.47911 0.84472 0.94351 0.87838 1.26600 0.96613 1.01457 0.97507 1.70199 1.48210 1.25689 1.12081 0.84527 0.78152 0.75470 0.78064 1.17113 1.19475 1.19578 1.19975 1.08569 0.92042 0.99103 0.90213 0.91598 0.92407 0.96811 0.90382 0.82605 0.86593 0.74337 0.82079 0.83083 0.86390 0.91952 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.96 71.98 0.72 -2.23 16 2 C 0.03 0.82 4.11 86.30 0.35 1.17 16 3 N -0.47 -10.08 5.54 -883.15 -4.89 -14.97 16 4 C 0.01 0.12 6.48 85.48 0.55 0.67 16 5 C 0.49 13.96 8.47 87.84 0.74 14.71 16 6 O -0.58 -21.53 18.03 -3.03 -0.05 -21.59 16 7 N -0.74 -19.30 5.11 -452.16 -2.31 -21.61 16 8 C 0.33 7.27 3.98 128.10 0.51 7.78 16 9 H 0.15 2.34 8.06 -2.38 -0.02 2.32 16 10 C -0.07 -1.87 3.59 -19.88 -0.07 -1.94 16 11 C -0.16 -3.92 9.68 22.30 0.22 -3.70 16 12 C -0.07 -1.98 10.04 22.25 0.22 -1.75 16 13 C -0.23 -9.31 9.17 22.39 0.21 -9.10 16 14 C 0.11 5.20 6.65 22.58 0.15 5.35 16 15 O -0.24 -13.96 9.76 -22.81 -0.22 -14.18 16 16 C -0.41 -23.39 9.49 67.92 0.64 -22.74 16 17 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 18 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 19 N -0.92 -56.89 13.67 21.61 0.30 -56.60 16 20 Si 1.02 42.38 29.55 68.60 2.03 44.41 16 21 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 24 C -0.18 -7.00 7.16 22.39 0.16 -6.84 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 1.19 6.62 -2.39 -0.02 1.18 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 28 H 0.01 0.45 6.85 -2.39 -0.02 0.43 16 29 H 0.08 2.40 6.08 -2.39 -0.01 2.38 16 30 H 0.16 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.12 2.24 6.29 -2.39 -0.02 2.23 16 32 H 0.42 11.12 8.96 -92.71 -0.83 10.29 16 33 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.12 4.86 5.64 -2.91 -0.02 4.84 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 37 H 0.09 3.96 6.90 -2.91 -0.02 3.94 16 Total: -1.00 -74.93 306.70 0.00 -74.93 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.28 Total: 29.18 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 4.87 Total: -19.56 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -6.91 Total: -93.18 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.28 Total: -35.77 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -74.93 0.00 -74.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788690705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.950 kcal (2) G-P(sol) polarization free energy of solvation -74.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds