Wall clock time and date at job start Mon Mar 30 2020 20:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21257 * 119.99892 * 2 1 4 4 C 1.47184 * 120.00068 * 179.97438 * 2 1 3 5 5 C 1.39884 * 120.13810 * 359.97438 * 4 2 1 6 6 C 1.37916 * 119.97724 * 180.02562 * 5 4 2 7 7 C 1.38286 * 120.25361 * 0.02562 * 6 5 4 8 8 C 1.39018 * 120.27847 * 359.97438 * 7 6 5 9 9 N 1.39718 * 119.99094 * 180.02562 * 8 7 6 10 10 C 1.46507 * 119.99728 * 359.97406 * 9 8 7 11 11 C 1.50704 * 109.46627 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00443 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99538 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00091 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47201 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99763 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99866 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99874 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99923 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47283 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47257 * 119.99948 * 19 17 15 22 22 H 1.48507 * 109.47157 * 239.99653 * 19 17 15 23 23 C 1.38611 * 120.02072 * 0.02562 * 8 7 6 24 24 H 1.08995 * 109.47033 * 239.99770 * 1 2 3 25 25 H 1.09000 * 109.47098 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47040 * 120.00140 * 1 2 3 27 27 H 1.08000 * 120.00962 * 359.97438 * 5 4 2 28 28 H 1.07999 * 119.86725 * 180.02562 * 6 5 4 29 29 H 1.08001 * 119.85915 * 180.02562 * 7 6 5 30 30 H 0.96992 * 120.00157 * 179.97438 * 9 8 7 31 31 H 1.08999 * 109.46845 * 300.00239 * 10 9 8 32 32 H 1.08998 * 109.46830 * 60.00565 * 10 9 8 33 33 H 0.97006 * 120.00120 * 359.97438 * 13 11 10 34 34 H 1.09002 * 109.46566 * 299.99708 * 14 13 11 35 35 H 1.09001 * 109.46650 * 59.99225 * 14 13 11 36 36 H 0.96996 * 119.99847 * 179.97438 * 18 17 15 37 37 H 1.07993 * 120.12760 * 180.27653 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5465 -2.4878 0.0017 6 6 2.2394 -3.6802 0.0027 7 6 3.6223 -3.6824 0.0033 8 6 4.3251 -2.4830 0.0022 9 7 5.7223 -2.4923 0.0022 10 6 6.4463 -3.7659 0.0039 11 6 7.9298 -3.5003 0.0042 12 8 8.3417 -2.3596 0.0026 13 7 8.7988 -4.5305 0.0052 14 6 10.2409 -4.2724 0.0049 15 6 10.9857 -5.5825 0.0067 16 1 10.4394 -6.5142 0.0076 17 6 12.3644 -5.5917 0.0073 18 7 13.0295 -4.4571 0.0058 19 14 13.2876 -7.2156 0.0089 20 1 12.3151 -8.3379 0.0100 21 1 14.1414 -7.3009 -1.2031 22 1 14.1404 -7.2990 1.2219 23 6 3.6403 -1.2779 0.0011 24 1 -0.3633 -0.5138 0.8899 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 0.4665 -2.4906 0.0025 28 1 1.6999 -4.6158 0.0031 29 1 4.1585 -4.6199 0.0037 30 1 6.2128 -1.6555 0.0011 31 1 6.1791 -4.3345 0.8946 32 1 6.1793 -4.3368 -0.8854 33 1 8.4693 -5.4429 0.0060 34 1 10.5079 -3.7035 -0.8858 35 1 10.5079 -3.7017 0.8942 36 1 13.9995 -4.4635 0.0066 37 1 4.1846 -0.3452 -0.0042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795050299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:18 Heat of formation + Delta-G solvation = -54.532796 kcal Electronic energy + Delta-G solvation = -19633.397268 eV Core-core repulsion = 16375.299774 eV Total energy + Delta-G solvation = -3258.097494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.22799 -39.26274 -38.38574 -35.36780 -34.30692 -32.46926 -31.69402 -30.92662 -29.30360 -27.78234 -26.05265 -23.82912 -22.51491 -22.24399 -20.03492 -19.58390 -18.02145 -17.18725 -16.33063 -15.95164 -15.76331 -15.43510 -15.34002 -15.17363 -14.91358 -14.68678 -14.07713 -13.78238 -13.62654 -13.46487 -12.79022 -12.68882 -12.59146 -12.36025 -12.06108 -11.88177 -11.76436 -11.36688 -11.03454 -10.97428 -10.40157 -10.29073 -9.97676 -9.48080 -9.33432 -9.13397 -8.84058 -8.06424 -7.54657 -6.24211 -4.31898 0.54128 1.40166 2.29365 3.10067 3.16129 3.18886 3.26541 3.29237 3.73578 3.87045 4.01013 4.29490 4.66268 4.75819 4.95681 4.96948 5.09001 5.12200 5.13592 5.17173 5.31345 5.34983 5.36304 5.45320 5.68504 5.76145 6.10295 6.19622 6.28996 6.57382 7.10920 7.20683 7.25941 7.31726 7.39852 7.55474 7.69927 7.87352 8.43649 8.64290 8.89062 9.34799 10.85967 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.048128 B = 0.002580 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.645272 B =10851.358639 C =11407.255196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.393 3.607 3 O -0.458 6.458 4 C -0.127 4.127 5 C -0.140 4.140 6 C -0.083 4.083 7 C -0.173 4.173 8 C 0.214 3.786 9 N -0.730 5.730 10 C 0.102 3.898 11 C 0.492 3.508 12 O -0.552 6.552 13 N -0.705 5.705 14 C 0.249 3.751 15 C -0.545 4.545 16 H 0.065 0.935 17 C 0.063 3.937 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.137 4.137 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.414 0.586 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.393 0.607 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.266 0.734 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.972 0.093 -0.008 24.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.271 3.729 3 O -0.334 6.334 4 C -0.129 4.129 5 C -0.161 4.161 6 C -0.102 4.102 7 C -0.196 4.196 8 C 0.109 3.891 9 N -0.362 5.362 10 C -0.026 4.026 11 C 0.276 3.724 12 O -0.431 6.431 13 N -0.353 5.353 14 C 0.128 3.872 15 C -0.584 4.584 16 H 0.083 0.917 17 C -0.141 4.141 18 N -0.522 5.522 19 Si 0.733 3.267 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.160 4.160 24 H 0.112 0.888 25 H 0.101 0.899 26 H 0.112 0.888 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.252 0.748 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.226 0.774 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -23.992 1.355 -0.010 24.031 hybrid contribution 0.703 -1.173 0.002 1.367 sum -23.289 0.183 -0.009 23.290 Atomic orbital electron populations 1.22230 0.93757 1.04943 1.04563 1.22588 0.91677 0.87709 0.70882 1.90549 1.72265 1.34443 1.36100 1.20177 0.93566 0.94622 1.04492 1.21094 0.99588 0.91340 1.04043 1.20837 0.93437 0.97927 0.97975 1.20931 0.94597 0.96611 1.07502 1.17738 0.83627 0.93662 0.94048 1.44503 1.02043 1.08595 1.81021 1.21141 0.90925 0.87473 1.03067 1.20318 0.87841 0.86202 0.78025 1.90668 1.79452 1.21761 1.51234 1.46419 1.09411 1.07892 1.71620 1.19175 0.72708 0.97340 0.97944 1.21235 0.91671 0.91966 1.53482 0.91727 1.24968 0.97475 0.97035 0.94589 1.69982 1.07926 1.25559 1.48691 0.86334 0.79729 0.82871 0.77814 1.19595 1.20744 1.20749 1.20847 0.93354 0.97032 1.04783 0.88798 0.89893 0.88803 0.85608 0.85576 0.85563 0.74756 0.89519 0.89513 0.77377 0.95335 0.95337 0.92396 0.85068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.17 8.93 36.01 0.32 -0.85 16 2 C 0.39 4.10 7.23 -30.68 -0.22 3.87 16 3 O -0.46 -6.52 17.08 5.58 0.10 -6.42 16 4 C -0.13 -1.36 5.87 -105.09 -0.62 -1.97 16 5 C -0.14 -1.16 9.47 -39.08 -0.37 -1.53 16 6 C -0.08 -0.70 10.02 -39.68 -0.40 -1.10 16 7 C -0.17 -1.76 9.31 -39.27 -0.37 -2.12 16 8 C 0.21 2.63 6.65 -83.84 -0.56 2.07 16 9 N -0.73 -9.96 5.71 -59.84 -0.34 -10.30 16 10 C 0.10 1.33 5.39 -5.19 -0.03 1.30 16 11 C 0.49 9.10 7.90 -10.98 -0.09 9.01 16 12 O -0.55 -12.52 15.67 5.56 0.09 -12.43 16 13 N -0.71 -13.85 5.55 -61.47 -0.34 -14.19 16 14 C 0.25 6.37 5.43 -5.19 -0.03 6.34 16 15 C -0.55 -14.35 9.28 -34.44 -0.32 -14.67 16 16 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.88 -25.64 13.29 55.43 0.74 -24.90 16 19 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 C -0.14 -1.72 9.44 -38.88 -0.37 -2.09 16 24 H 0.09 0.39 8.08 -51.93 -0.42 -0.03 16 25 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 26 H 0.09 0.39 8.09 -51.93 -0.42 -0.03 16 27 H 0.13 0.66 7.04 -52.49 -0.37 0.29 16 28 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 29 H 0.13 1.09 6.71 -52.49 -0.35 0.73 16 30 H 0.41 6.27 7.45 -40.82 -0.30 5.97 16 31 H 0.09 0.95 7.94 -51.93 -0.41 0.53 16 32 H 0.09 0.95 7.94 -51.93 -0.41 0.53 16 33 H 0.39 6.40 8.32 -40.82 -0.34 6.06 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.13 1.75 7.65 -52.49 -0.40 1.35 16 LS Contribution 326.09 15.07 4.91 4.91 Total: -1.00 -33.10 326.09 -7.66 -40.76 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.65 Total: 7.28 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -3.13 Total: -0.11 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.05 Total: -49.39 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.18 Total: -18.85 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.10 -7.66 -40.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795050299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.771 kcal (2) G-P(sol) polarization free energy of solvation -33.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds