Wall clock time and date at job start Mon Mar 30 2020 20:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21257 * 119.99892 * 2 1 4 4 C 1.47184 * 120.00068 * 179.97438 * 2 1 3 5 5 C 1.39884 * 120.13810 * 359.97438 * 4 2 1 6 6 C 1.37916 * 119.97724 * 180.02562 * 5 4 2 7 7 C 1.38286 * 120.25361 * 0.02562 * 6 5 4 8 8 C 1.39018 * 120.27847 * 359.97438 * 7 6 5 9 9 N 1.39718 * 119.99094 * 180.02562 * 8 7 6 10 10 C 1.46507 * 119.99728 * 359.97406 * 9 8 7 11 11 C 1.50704 * 109.46627 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00443 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99538 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00091 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.47201 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99763 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99866 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99874 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99923 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47283 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47257 * 119.99948 * 19 17 15 22 22 H 1.48507 * 109.47157 * 239.99653 * 19 17 15 23 23 C 1.38611 * 120.02072 * 0.02562 * 8 7 6 24 24 H 1.08995 * 109.47033 * 239.99770 * 1 2 3 25 25 H 1.09000 * 109.47098 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47040 * 120.00140 * 1 2 3 27 27 H 1.08000 * 120.00962 * 359.97438 * 5 4 2 28 28 H 1.07999 * 119.86725 * 180.02562 * 6 5 4 29 29 H 1.08001 * 119.85915 * 180.02562 * 7 6 5 30 30 H 0.96992 * 120.00157 * 179.97438 * 9 8 7 31 31 H 1.08999 * 109.46845 * 300.00239 * 10 9 8 32 32 H 1.08998 * 109.46830 * 60.00565 * 10 9 8 33 33 H 0.97006 * 120.00120 * 359.97438 * 13 11 10 34 34 H 1.09002 * 109.46566 * 299.99708 * 14 13 11 35 35 H 1.09001 * 109.46650 * 59.99225 * 14 13 11 36 36 H 0.96996 * 119.99847 * 179.97438 * 18 17 15 37 37 H 1.07993 * 120.12760 * 180.27653 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5465 -2.4878 0.0017 6 6 2.2394 -3.6802 0.0027 7 6 3.6223 -3.6824 0.0033 8 6 4.3251 -2.4830 0.0022 9 7 5.7223 -2.4923 0.0022 10 6 6.4463 -3.7659 0.0039 11 6 7.9298 -3.5003 0.0042 12 8 8.3417 -2.3596 0.0026 13 7 8.7988 -4.5305 0.0052 14 6 10.2409 -4.2724 0.0049 15 6 10.9857 -5.5825 0.0067 16 1 10.4394 -6.5142 0.0076 17 6 12.3644 -5.5917 0.0073 18 7 13.0295 -4.4571 0.0058 19 14 13.2876 -7.2156 0.0089 20 1 12.3151 -8.3379 0.0100 21 1 14.1414 -7.3009 -1.2031 22 1 14.1404 -7.2990 1.2219 23 6 3.6403 -1.2779 0.0011 24 1 -0.3633 -0.5138 0.8899 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 0.4665 -2.4906 0.0025 28 1 1.6999 -4.6158 0.0031 29 1 4.1585 -4.6199 0.0037 30 1 6.2128 -1.6555 0.0011 31 1 6.1791 -4.3345 0.8946 32 1 6.1793 -4.3368 -0.8854 33 1 8.4693 -5.4429 0.0060 34 1 10.5079 -3.7035 -0.8858 35 1 10.5079 -3.7017 0.8942 36 1 13.9995 -4.4635 0.0066 37 1 4.1846 -0.3452 -0.0042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795050299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:18 Heat of formation + Delta-G solvation = -78.950924 kcal Electronic energy + Delta-G solvation = -19634.456117 eV Core-core repulsion = 16375.299774 eV Total energy + Delta-G solvation = -3259.156343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.13032 -40.63417 -39.36561 -36.50982 -35.99948 -34.42378 -32.44986 -31.81240 -30.25518 -29.27851 -27.33828 -24.93021 -24.13130 -23.04873 -21.59490 -20.43287 -19.34757 -18.37681 -17.74901 -17.21515 -16.86858 -16.76491 -16.59689 -16.18569 -15.98268 -15.81850 -15.34960 -14.96845 -14.61909 -14.46027 -14.27450 -13.96193 -13.95880 -13.27090 -13.13504 -12.95682 -12.93128 -12.76846 -12.57024 -12.23559 -12.13232 -11.48490 -11.14050 -10.97591 -10.84751 -10.77361 -9.93477 -9.90981 -8.44172 -8.31541 -6.48260 -0.25027 0.64399 1.43191 1.44016 1.52602 1.57569 1.59467 2.03012 2.36866 2.68763 2.97018 3.04028 3.18485 3.78582 3.97950 4.08678 4.20298 4.32565 4.37581 4.43760 4.51323 4.55677 4.73179 4.82296 4.98361 5.06348 5.19347 5.19658 5.32783 5.42333 5.46420 5.57288 5.61510 5.80808 5.86486 6.29279 6.55525 6.59696 6.63431 6.80375 7.19991 7.37378 8.80867 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.048128 B = 0.002580 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.645272 B =10851.358639 C =11407.255196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.389 3.611 3 O -0.513 6.513 4 C -0.144 4.144 5 C -0.121 4.121 6 C -0.079 4.079 7 C -0.172 4.172 8 C 0.194 3.806 9 N -0.747 5.747 10 C 0.120 3.880 11 C 0.489 3.511 12 O -0.600 6.600 13 N -0.699 5.699 14 C 0.265 3.735 15 C -0.554 4.554 16 H 0.088 0.912 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.986 3.014 20 H -0.250 1.250 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.168 4.168 24 H 0.121 0.879 25 H 0.080 0.920 26 H 0.121 0.879 27 H 0.167 0.833 28 H 0.165 0.835 29 H 0.147 0.853 30 H 0.400 0.600 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.414 0.586 34 H -0.012 1.012 35 H -0.012 1.012 36 H 0.268 0.732 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.335 -3.749 -0.005 28.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.271 3.729 3 O -0.393 6.393 4 C -0.146 4.146 5 C -0.141 4.141 6 C -0.098 4.098 7 C -0.194 4.194 8 C 0.091 3.909 9 N -0.379 5.379 10 C -0.007 4.007 11 C 0.276 3.724 12 O -0.483 6.483 13 N -0.349 5.349 14 C 0.142 3.858 15 C -0.592 4.592 16 H 0.106 0.894 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.809 3.191 20 H -0.173 1.173 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.191 4.191 24 H 0.139 0.861 25 H 0.099 0.901 26 H 0.139 0.861 27 H 0.184 0.816 28 H 0.183 0.817 29 H 0.165 0.835 30 H 0.236 0.764 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.250 0.750 34 H 0.006 0.994 35 H 0.006 0.994 36 H 0.077 0.923 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -27.449 -2.548 -0.007 27.567 hybrid contribution 1.632 0.066 0.000 1.633 sum -25.817 -2.482 -0.006 25.936 Atomic orbital electron populations 1.22270 0.89653 1.05758 1.06959 1.23368 0.93889 0.86804 0.68805 1.90535 1.73707 1.36073 1.38953 1.20436 0.92872 0.96138 1.05154 1.21571 1.01550 0.90025 1.00934 1.21336 0.92795 0.99495 0.96127 1.21290 0.95706 0.96206 1.06229 1.17898 0.82854 0.94515 0.95649 1.44556 1.02794 1.08034 1.82500 1.21133 0.85874 0.87796 1.05883 1.21328 0.90205 0.84932 0.75915 1.90651 1.80834 1.23880 1.52890 1.46082 1.07207 1.09501 1.72084 1.18585 0.76405 0.96630 0.94198 1.21654 0.92169 0.92647 1.52701 0.89368 1.26100 0.98759 1.01083 0.93899 1.70147 1.08350 1.28543 1.50058 0.85090 0.78260 0.78174 0.77561 1.17300 1.20620 1.20625 1.20844 0.94698 0.96397 1.07129 0.86089 0.90128 0.86094 0.81562 0.81726 0.83537 0.76402 0.86404 0.86395 0.74974 0.99400 0.99404 0.92279 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 8.93 71.24 0.64 -1.07 16 2 C 0.39 7.97 7.23 28.04 0.20 8.17 16 3 O -0.51 -15.60 17.08 -2.96 -0.05 -15.65 16 4 C -0.14 -2.94 5.87 -20.17 -0.12 -3.06 16 5 C -0.12 -1.51 9.47 22.59 0.21 -1.30 16 6 C -0.08 -0.95 10.02 22.20 0.22 -0.73 16 7 C -0.17 -2.91 9.31 22.47 0.21 -2.70 16 8 C 0.19 4.67 6.65 38.16 0.25 4.92 16 9 N -0.75 -20.69 5.71 -343.24 -1.96 -22.65 16 10 C 0.12 2.94 5.39 85.63 0.46 3.40 16 11 C 0.49 18.39 7.90 87.66 0.69 19.09 16 12 O -0.60 -28.90 15.67 -3.03 -0.05 -28.94 16 13 N -0.70 -27.59 5.55 -466.77 -2.59 -30.18 16 14 C 0.26 14.15 5.43 85.63 0.46 14.62 16 15 C -0.55 -29.24 9.28 25.60 0.24 -29.00 16 16 H 0.09 4.14 7.60 -2.91 -0.02 4.11 16 17 C 0.00 0.06 5.46 84.65 0.46 0.52 16 18 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 19 Si 0.99 41.48 29.54 68.60 2.03 43.50 16 20 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 23 C -0.17 -4.41 9.44 22.72 0.21 -4.19 16 24 H 0.12 0.47 8.08 -2.39 -0.02 0.45 16 25 H 0.08 0.80 8.12 -2.39 -0.02 0.78 16 26 H 0.12 0.47 8.09 -2.39 -0.02 0.45 16 27 H 0.17 0.71 7.04 -2.91 -0.02 0.69 16 28 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 29 H 0.15 1.83 6.71 -2.91 -0.02 1.81 16 30 H 0.40 13.16 7.45 -92.71 -0.69 12.47 16 31 H 0.12 2.19 7.94 -2.39 -0.02 2.17 16 32 H 0.12 2.19 7.94 -2.39 -0.02 2.17 16 33 H 0.41 12.76 8.32 -92.70 -0.77 11.99 16 34 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 35 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 36 H 0.27 15.00 8.31 -92.71 -0.77 14.22 16 37 H 0.10 3.15 7.65 -2.91 -0.02 3.13 16 Total: -1.00 -79.32 326.09 1.46 -77.86 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -0.35 Total: 22.93 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 4.15 Total: 8.67 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -4.26 Total: -108.37 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.10 Total: -44.59 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -79.32 1.46 -77.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795050299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.093 kcal (2) G-P(sol) polarization free energy of solvation -79.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds