Wall clock time and date at job start Mon Mar 30 2020 20:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47116 * 60.00382 * 8 6 4 10 10 H 1.48503 * 109.46756 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47119 * 300.00049 * 8 6 4 12 12 O 1.45200 * 109.47003 * 240.00087 * 2 1 3 13 13 C 1.34233 * 117.00286 * 89.99738 * 12 2 1 14 14 O 1.20824 * 119.99505 * 359.97438 * 13 12 2 15 15 C 1.50695 * 120.00335 * 180.02562 * 13 12 2 16 16 H 1.09004 * 109.62939 * 299.99930 * 15 13 12 17 17 C 1.53296 * 109.63335 * 179.60808 * 15 13 12 18 18 C 1.52735 * 108.55508 * 170.71898 * 17 15 13 19 19 C 1.50448 * 110.58028 * 50.76575 * 18 17 15 20 20 N 1.32889 * 118.52720 * 162.65785 * 19 18 17 21 21 C 1.31607 * 121.05903 * 179.44036 * 20 19 18 22 22 N 1.31814 * 121.66781 * 359.97438 * 21 20 19 23 23 C 1.32190 * 120.64653 * 0.17477 * 22 21 20 24 24 C 1.37762 * 122.57918 * 342.32838 * 19 18 17 25 25 C 1.50337 * 122.80472 * 0.70938 * 24 19 18 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.63070 * 290.23174 * 17 15 13 31 31 H 1.08999 * 109.63677 * 50.81538 * 17 15 13 32 32 H 1.09000 * 109.13141 * 290.49139 * 18 17 15 33 33 H 1.09010 * 109.19114 * 171.07046 * 18 17 15 34 34 H 1.08001 * 119.16637 * 180.02562 * 21 20 19 35 35 H 1.07995 * 120.36377 * 179.97438 * 23 22 21 36 36 H 1.08994 * 109.30983 * 222.13704 * 25 24 19 37 37 H 1.09000 * 109.30985 * 102.72983 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8077 -1.1190 4.0077 10 1 1.8280 -0.4193 5.2204 11 1 1.8282 -2.5198 4.0081 12 8 2.0140 -0.6845 -1.1856 13 6 2.2171 0.0640 -2.2812 14 8 1.9973 1.2517 -2.2506 15 6 2.7182 -0.5772 -3.5496 16 1 3.6872 -1.0417 -3.3670 17 6 2.8552 0.4864 -4.6450 18 6 3.5777 -0.1354 -5.8385 19 6 2.9267 -1.4330 -6.2333 20 7 3.1855 -1.9323 -7.4374 21 6 2.6518 -3.0694 -7.8300 22 7 1.8425 -3.7593 -7.0512 23 6 1.5373 -3.3230 -5.8413 24 6 2.0806 -2.1241 -5.3940 25 6 1.7211 -1.6365 -4.0181 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7091 1.1614 3.4844 30 1 1.8656 0.8226 -4.9548 31 1 3.4298 1.3312 -4.2655 32 1 4.6175 -0.3210 -5.5694 33 1 3.5411 0.5568 -6.6798 34 1 2.8834 -3.4472 -8.8149 35 1 0.8734 -3.8917 -5.2072 36 1 1.7343 -2.4761 -3.3233 37 1 0.7203 -1.2051 -4.0387 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842716856.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:28 Heat of formation + Delta-G solvation = -76.479994 kcal Electronic energy + Delta-G solvation = -21002.186241 eV Core-core repulsion = 17743.137046 eV Total energy + Delta-G solvation = -3259.049195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.40199 -41.32656 -38.34551 -37.25478 -35.34404 -35.04504 -32.54228 -31.93844 -31.11702 -27.44692 -26.56989 -25.53140 -24.00808 -23.68708 -22.01574 -20.67748 -19.07361 -18.57034 -18.39228 -17.77947 -17.40851 -16.82243 -16.40220 -16.03003 -15.37329 -15.22922 -14.95326 -14.82685 -14.53164 -14.19728 -14.10886 -13.73167 -13.32618 -13.21336 -12.99522 -12.85032 -12.77876 -12.37427 -12.23554 -12.16190 -12.02761 -11.90695 -11.55628 -11.37321 -11.18042 -10.97619 -10.58281 -10.21839 -10.18603 -8.27885 -6.44646 -0.08741 0.03922 1.32335 1.43117 1.46349 1.54394 1.98557 2.41888 2.74749 3.01165 3.03114 3.27194 3.43872 3.47674 3.59043 3.76418 3.95754 4.18916 4.26450 4.29844 4.41695 4.53423 4.56939 4.68514 4.76782 4.79640 4.85578 4.88345 5.05009 5.06458 5.18377 5.20033 5.46524 5.50214 5.65184 5.94148 5.98497 6.10967 6.60836 6.97676 7.09235 7.27599 8.79439 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.031741 B = 0.003807 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.936081 B = 7352.477452 C = 7721.723946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.217 3.783 3 H 0.007 0.993 4 C -0.549 4.549 5 H 0.069 0.931 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.981 3.019 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.263 1.263 12 O -0.359 6.359 13 C 0.453 3.547 14 O -0.549 6.549 15 C -0.073 4.073 16 H 0.126 0.874 17 C -0.098 4.098 18 C -0.063 4.063 19 C 0.170 3.830 20 N -0.536 5.536 21 C 0.282 3.718 22 N -0.539 5.539 23 C 0.152 3.848 24 C -0.178 4.178 25 C -0.057 4.057 26 H 0.078 0.922 27 H 0.024 0.976 28 H 0.047 0.953 29 H 0.270 0.730 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.222 0.778 35 H 0.192 0.808 36 H 0.105 0.895 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 -6.769 -16.918 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.164 3.836 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.804 3.196 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.188 1.188 12 O -0.275 6.275 13 C 0.298 3.702 14 O -0.440 6.440 15 C -0.092 4.092 16 H 0.144 0.856 17 C -0.136 4.136 18 C -0.100 4.100 19 C 0.026 3.974 20 N -0.250 5.250 21 C -0.005 4.005 22 N -0.252 5.252 23 C -0.015 4.015 24 C -0.182 4.182 25 C -0.095 4.095 26 H 0.097 0.903 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.238 0.762 35 H 0.209 0.791 36 H 0.123 0.877 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.361 -6.653 -17.655 19.164 hybrid contribution -0.223 0.427 1.776 1.840 sum 3.138 -6.226 -15.879 17.342 Atomic orbital electron populations 1.21978 0.96746 1.00486 1.00773 1.20314 0.92005 0.92015 0.79262 0.97552 1.21289 1.33406 1.13944 0.89977 0.91300 1.25810 0.94723 0.95632 1.02136 1.70007 1.36623 1.23662 1.25247 0.85266 0.78793 0.78687 0.76877 1.19354 1.20421 1.18768 1.86474 1.75975 1.43661 1.21385 1.24275 0.73785 0.85698 0.86477 1.90590 1.49763 1.18499 1.85193 1.21139 1.01996 0.97809 0.88292 0.85591 1.21446 1.02389 0.96936 0.92820 1.20410 0.99937 0.91280 0.98377 1.21623 0.91273 0.95889 0.88572 1.68444 1.25335 1.14682 1.16526 1.25485 0.88215 0.86581 1.00250 1.68501 1.15729 1.35112 1.05882 1.23704 0.94106 0.91800 0.91885 1.21066 1.00861 0.97959 0.98321 1.20185 0.98542 0.98565 0.92205 0.90314 0.95701 0.93348 0.92034 0.91150 0.89590 0.87391 0.87378 0.76175 0.79117 0.87683 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.10 9.33 71.98 0.67 -6.43 16 2 C 0.22 11.58 2.56 29.85 0.08 11.66 16 3 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16 4 C -0.55 -30.38 8.90 25.60 0.23 -30.15 16 5 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.92 -52.01 11.32 21.45 0.24 -51.77 16 8 Si 0.98 42.01 29.54 68.60 2.03 44.04 16 9 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 10 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 12 O -0.36 -16.20 9.80 -51.45 -0.50 -16.70 16 13 C 0.45 17.52 7.21 71.23 0.51 18.03 16 14 O -0.55 -24.87 15.07 21.97 0.33 -24.53 16 15 C -0.07 -1.89 2.65 -11.50 -0.03 -1.92 16 16 H 0.13 2.83 8.11 -2.38 -0.02 2.81 16 17 C -0.10 -2.17 4.71 30.61 0.14 -2.03 16 18 C -0.06 -1.10 5.95 29.68 0.18 -0.93 16 19 C 0.17 3.53 6.63 42.21 0.28 3.81 16 20 N -0.54 -11.36 10.32 -188.72 -1.95 -13.31 16 21 C 0.28 5.34 12.29 180.93 2.22 7.56 16 22 N -0.54 -11.16 10.44 -199.92 -2.09 -13.25 16 23 C 0.15 2.90 10.94 84.83 0.93 3.83 16 24 C -0.18 -3.62 5.74 -19.90 -0.11 -3.73 16 25 C -0.06 -1.24 4.98 29.68 0.15 -1.09 16 26 H 0.08 4.27 6.07 -2.39 -0.01 4.25 16 27 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.07 1.64 8.11 -2.38 -0.02 1.62 16 31 H 0.09 2.02 7.81 -2.39 -0.02 2.00 16 32 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.22 2.60 8.06 -2.91 -0.02 2.57 16 35 H 0.19 2.64 8.06 -2.91 -0.02 2.61 16 36 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.09 1.94 8.11 -2.39 -0.02 1.92 16 Total: -1.00 -67.57 313.27 4.83 -62.74 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.08 Total: 12.81 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 5.69 Total: -0.03 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -3.79 Total: -78.33 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.17 Total: -41.24 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -67.57 4.83 -62.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842716856.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.740 kcal (2) G-P(sol) polarization free energy of solvation -67.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds