Wall clock time and date at job start Mon Mar 30 2020 20:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47034 * 2 1 4 4 C 1.50693 * 109.47530 * 239.99805 * 2 1 3 5 5 H 1.08006 * 120.00134 * 274.99824 * 4 2 1 6 6 C 1.37879 * 120.00298 * 94.99405 * 4 2 1 7 7 N 1.31510 * 120.00120 * 184.91541 * 6 4 2 8 8 Si 1.86795 * 119.99636 * 4.91564 * 6 4 2 9 9 H 1.48506 * 109.46973 * 84.83731 * 8 6 4 10 10 H 1.48509 * 109.47014 * 204.83283 * 8 6 4 11 11 H 1.48497 * 109.47503 * 324.83422 * 8 6 4 12 12 O 1.45203 * 109.46958 * 119.99437 * 2 1 3 13 13 C 1.34225 * 117.00238 * 270.00203 * 12 2 1 14 14 O 1.20830 * 120.00125 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00311 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.79987 * 59.49249 * 15 13 12 17 17 C 1.53308 * 109.63743 * 180.02562 * 15 13 12 18 18 C 1.52806 * 108.52867 * 189.47717 * 17 15 13 19 19 C 1.50443 * 110.45261 * 308.99940 * 18 17 15 20 20 N 1.32894 * 118.53657 * 197.63970 * 19 18 17 21 21 C 1.31607 * 121.06355 * 180.25748 * 20 19 18 22 22 N 1.31811 * 121.67029 * 0.02731 * 21 20 19 23 23 C 1.32179 * 120.64465 * 359.86840 * 22 21 20 24 24 C 1.37769 * 122.58509 * 17.70594 * 19 18 17 25 25 C 1.50343 * 122.79830 * 359.31265 * 24 19 18 26 26 H 1.09007 * 109.46733 * 175.03608 * 1 2 3 27 27 H 1.08999 * 109.47564 * 295.03109 * 1 2 3 28 28 H 1.08998 * 109.47079 * 55.03949 * 1 2 3 29 29 H 0.97001 * 120.00345 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.62954 * 309.18561 * 17 15 13 31 31 H 1.09000 * 109.62988 * 69.56809 * 17 15 13 32 32 H 1.08997 * 109.31008 * 69.30099 * 18 17 15 33 33 H 1.09001 * 109.30481 * 188.90148 * 18 17 15 34 34 H 1.08000 * 119.16126 * 180.02562 * 21 20 19 35 35 H 1.08001 * 120.36746 * 179.97438 * 23 22 21 36 36 H 1.09001 * 109.31483 * 257.34764 * 25 24 19 37 37 H 1.09005 * 109.30611 * 137.93420 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.1356 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4621 8 14 2.3133 1.8789 -2.3175 9 1 3.5989 2.3949 -1.7824 10 1 2.1054 2.3988 -3.6930 11 1 1.1984 2.3273 -1.4452 12 8 2.0139 -0.6844 1.1857 13 6 2.2170 0.0641 2.2812 14 8 1.9972 1.2519 2.2506 15 6 2.7192 -0.5768 3.5493 16 1 3.6844 -1.0493 3.3671 17 6 2.8647 0.4884 4.6423 18 6 3.5929 -0.1339 5.8329 19 6 2.9354 -1.4261 6.2343 20 7 3.1935 -1.9220 7.4400 21 6 2.6494 -3.0514 7.8404 22 7 1.8300 -3.7369 7.0683 23 6 1.5255 -3.3040 5.8571 24 6 2.0797 -2.1132 5.4015 25 6 1.7159 -1.6263 4.0264 26 1 -0.3633 -1.0239 -0.0889 27 1 -0.3634 0.4348 0.9311 28 1 -0.3633 0.5889 -0.8422 29 1 2.9363 -0.1051 -4.2556 30 1 3.4421 1.3298 4.2591 31 1 1.8779 0.8324 4.9520 32 1 4.6303 -0.3270 5.5600 33 1 3.5644 0.5582 6.6745 34 1 2.8802 -3.4261 8.8267 35 1 0.8539 -3.8695 5.2280 36 1 0.7188 -1.1866 4.0517 37 1 1.7181 -2.4681 3.3337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842716857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:30 Heat of formation + Delta-G solvation = -58.344746 kcal Electronic energy + Delta-G solvation = -21079.877462 eV Core-core repulsion = 17821.614670 eV Total energy + Delta-G solvation = -3258.262792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55224 -39.89807 -37.21958 -35.74939 -34.26331 -33.12817 -31.63995 -30.95371 -30.18601 -25.64095 -25.44296 -24.57693 -23.18404 -22.16824 -20.46397 -19.42505 -18.03661 -17.39288 -17.12944 -16.58793 -16.10766 -15.42786 -15.21746 -14.53641 -14.25746 -14.09679 -14.06700 -13.81486 -13.28935 -12.93375 -12.71071 -12.47436 -12.35279 -12.07233 -11.71195 -11.30351 -11.16030 -11.11128 -11.03489 -10.94221 -10.76453 -10.56735 -10.05351 -9.75808 -9.52756 -9.40290 -9.37030 -9.18986 -8.77257 -6.32629 -4.36993 0.70637 0.84188 2.76093 3.15763 3.25100 3.30054 3.39127 3.54267 3.78819 4.00732 4.21399 4.24543 4.40296 4.47900 4.71536 4.89520 5.03285 5.06404 5.13220 5.24620 5.32422 5.49196 5.52622 5.62126 5.71981 5.90323 5.94052 6.07864 6.11386 6.24603 6.35439 6.45138 6.63211 6.78139 7.08217 7.30686 7.46800 7.88154 8.17204 8.56167 8.77426 9.26298 10.78645 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.033907 B = 0.004070 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.587988 B = 6877.807691 C = 7252.333729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.181 3.819 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.086 0.914 6 C 0.082 3.918 7 N -0.881 5.881 8 Si 0.870 3.130 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.261 1.261 12 O -0.346 6.346 13 C 0.456 3.544 14 O -0.523 6.523 15 C -0.085 4.085 16 H 0.110 0.890 17 C -0.104 4.104 18 C -0.072 4.072 19 C 0.179 3.821 20 N -0.522 5.522 21 C 0.285 3.715 22 N -0.523 5.523 23 C 0.152 3.848 24 C -0.173 4.173 25 C -0.064 4.064 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.061 0.939 29 H 0.271 0.729 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.194 0.806 35 H 0.171 0.829 36 H 0.089 0.911 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 -1.653 18.648 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.128 3.872 3 H 0.065 0.935 4 C -0.557 4.557 5 H 0.104 0.896 6 C -0.122 4.122 7 N -0.517 5.517 8 Si 0.696 3.304 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.185 1.185 12 O -0.261 6.261 13 C 0.299 3.701 14 O -0.413 6.413 15 C -0.104 4.104 16 H 0.128 0.872 17 C -0.142 4.142 18 C -0.109 4.109 19 C 0.035 3.965 20 N -0.236 5.236 21 C -0.003 4.003 22 N -0.237 5.237 23 C -0.015 4.015 24 C -0.177 4.177 25 C -0.103 4.103 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.211 0.789 35 H 0.188 0.812 36 H 0.107 0.893 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.393 -1.643 19.297 19.371 hybrid contribution -0.192 1.258 -0.962 1.595 sum -0.584 -0.384 18.336 18.349 Atomic orbital electron populations 1.22237 0.97514 1.01615 0.99668 1.21009 0.91450 0.94134 0.80571 0.93539 1.20794 1.45510 0.96324 0.93068 0.89637 1.24914 0.93505 0.98615 0.95187 1.69849 1.43900 1.36277 1.01702 0.86961 0.79917 0.85776 0.77791 1.19562 1.20681 1.18521 1.86666 1.75320 1.43482 1.20652 1.23261 0.74757 0.86007 0.86058 1.90593 1.48914 1.16979 1.84836 1.21049 1.01225 0.97119 0.91012 0.87157 1.21504 1.02345 0.97499 0.92864 1.20468 0.99686 0.91783 0.98994 1.21395 0.91249 0.95407 0.88456 1.68389 1.24880 1.14119 1.16227 1.24872 0.88934 0.87088 0.99379 1.68413 1.15248 1.34368 1.05640 1.23329 0.94466 0.91935 0.91737 1.21163 1.00107 0.97598 0.98799 1.20281 0.99124 0.99207 0.91646 0.92356 0.95184 0.91987 0.91925 0.89138 0.90539 0.88737 0.88633 0.78922 0.81196 0.89323 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.53 37.16 0.35 -2.90 16 2 C 0.18 4.38 2.22 -27.89 -0.06 4.32 16 3 H 0.05 1.18 4.31 -51.93 -0.22 0.96 16 4 C -0.52 -14.36 9.25 -34.44 -0.32 -14.68 16 5 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 7 N -0.88 -25.76 13.96 55.43 0.77 -24.99 16 8 Si 0.87 21.02 26.99 -169.99 -4.59 16.43 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.26 -6.14 6.82 56.52 0.39 -5.76 16 12 O -0.35 -7.43 9.81 -39.25 -0.39 -7.82 16 13 C 0.46 8.40 7.21 36.01 0.26 8.66 16 14 O -0.52 -10.93 15.07 -18.75 -0.28 -11.21 16 15 C -0.08 -1.10 2.66 -91.70 -0.24 -1.34 16 16 H 0.11 1.32 8.10 -51.93 -0.42 0.90 16 17 C -0.10 -1.17 4.70 -26.67 -0.13 -1.29 16 18 C -0.07 -0.69 5.96 -28.11 -0.17 -0.86 16 19 C 0.18 2.00 6.62 -82.43 -0.55 1.45 16 20 N -0.52 -6.02 10.32 -11.00 -0.11 -6.13 16 21 C 0.29 2.97 12.29 -92.30 -1.13 1.84 16 22 N -0.52 -5.88 10.44 -14.55 -0.15 -6.03 16 23 C 0.15 1.57 10.94 -17.11 -0.19 1.39 16 24 C -0.17 -1.86 5.73 -104.68 -0.60 -2.46 16 25 C -0.06 -0.72 4.98 -28.14 -0.14 -0.86 16 26 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.09 1.05 7.82 -51.93 -0.41 0.65 16 31 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 37 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 312.93 15.07 4.72 4.72 Total: -1.00 -31.98 312.93 -7.89 -39.87 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -4.85 Total: -0.31 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -3.01 Total: -4.54 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.51 Total: -37.15 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.67 Total: -19.02 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.59 Total: 16.43 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.98 -7.89 -39.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842716857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.476 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds