Wall clock time and date at job start Mon Mar 30 2020 20:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47034 * 2 1 4 4 C 1.50693 * 109.47530 * 239.99805 * 2 1 3 5 5 H 1.08006 * 120.00134 * 274.99824 * 4 2 1 6 6 C 1.37879 * 120.00298 * 94.99405 * 4 2 1 7 7 N 1.31510 * 120.00120 * 184.91541 * 6 4 2 8 8 Si 1.86795 * 119.99636 * 4.91564 * 6 4 2 9 9 H 1.48506 * 109.46973 * 84.83731 * 8 6 4 10 10 H 1.48509 * 109.47014 * 204.83283 * 8 6 4 11 11 H 1.48497 * 109.47503 * 324.83422 * 8 6 4 12 12 O 1.45203 * 109.46958 * 119.99437 * 2 1 3 13 13 C 1.34225 * 117.00238 * 270.00203 * 12 2 1 14 14 O 1.20830 * 120.00125 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00311 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.79987 * 59.49249 * 15 13 12 17 17 C 1.53308 * 109.63743 * 180.02562 * 15 13 12 18 18 C 1.52806 * 108.52867 * 189.47717 * 17 15 13 19 19 C 1.50443 * 110.45261 * 308.99940 * 18 17 15 20 20 N 1.32894 * 118.53657 * 197.63970 * 19 18 17 21 21 C 1.31607 * 121.06355 * 180.25748 * 20 19 18 22 22 N 1.31811 * 121.67029 * 0.02731 * 21 20 19 23 23 C 1.32179 * 120.64465 * 359.86840 * 22 21 20 24 24 C 1.37769 * 122.58509 * 17.70594 * 19 18 17 25 25 C 1.50343 * 122.79830 * 359.31265 * 24 19 18 26 26 H 1.09007 * 109.46733 * 175.03608 * 1 2 3 27 27 H 1.08999 * 109.47564 * 295.03109 * 1 2 3 28 28 H 1.08998 * 109.47079 * 55.03949 * 1 2 3 29 29 H 0.97001 * 120.00345 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.62954 * 309.18561 * 17 15 13 31 31 H 1.09000 * 109.62988 * 69.56809 * 17 15 13 32 32 H 1.08997 * 109.31008 * 69.30099 * 18 17 15 33 33 H 1.09001 * 109.30481 * 188.90148 * 18 17 15 34 34 H 1.08000 * 119.16126 * 180.02562 * 21 20 19 35 35 H 1.08001 * 120.36746 * 179.97438 * 23 22 21 36 36 H 1.09001 * 109.31483 * 257.34764 * 25 24 19 37 37 H 1.09005 * 109.30611 * 137.93420 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.1356 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4621 8 14 2.3133 1.8789 -2.3175 9 1 3.5989 2.3949 -1.7824 10 1 2.1054 2.3988 -3.6930 11 1 1.1984 2.3273 -1.4452 12 8 2.0139 -0.6844 1.1857 13 6 2.2170 0.0641 2.2812 14 8 1.9972 1.2519 2.2506 15 6 2.7192 -0.5768 3.5493 16 1 3.6844 -1.0493 3.3671 17 6 2.8647 0.4884 4.6423 18 6 3.5929 -0.1339 5.8329 19 6 2.9354 -1.4261 6.2343 20 7 3.1935 -1.9220 7.4400 21 6 2.6494 -3.0514 7.8404 22 7 1.8300 -3.7369 7.0683 23 6 1.5255 -3.3040 5.8571 24 6 2.0797 -2.1132 5.4015 25 6 1.7159 -1.6263 4.0264 26 1 -0.3633 -1.0239 -0.0889 27 1 -0.3634 0.4348 0.9311 28 1 -0.3633 0.5889 -0.8422 29 1 2.9363 -0.1051 -4.2556 30 1 3.4421 1.3298 4.2591 31 1 1.8779 0.8324 4.9520 32 1 4.6303 -0.3270 5.5600 33 1 3.5644 0.5582 6.6745 34 1 2.8802 -3.4261 8.8267 35 1 0.8539 -3.8695 5.2280 36 1 0.7188 -1.1866 4.0517 37 1 1.7181 -2.4681 3.3337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842716857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:30 Heat of formation + Delta-G solvation = -76.725503 kcal Electronic energy + Delta-G solvation = -21080.674511 eV Core-core repulsion = 17821.614670 eV Total energy + Delta-G solvation = -3259.059842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.40704 -41.37426 -38.37892 -37.26857 -35.21808 -35.02314 -32.75675 -32.39841 -31.31662 -27.45913 -26.57911 -25.52856 -24.00784 -23.57124 -21.90818 -20.74567 -19.47248 -18.70402 -18.42064 -17.78426 -17.52183 -16.95118 -16.25827 -15.97675 -15.40881 -15.26228 -14.92293 -14.78784 -14.64947 -14.39941 -14.22860 -14.09173 -13.54215 -13.19070 -13.11696 -12.97021 -12.81435 -12.55084 -12.24256 -12.02228 -11.98913 -11.87572 -11.45436 -11.36978 -11.25110 -11.09714 -10.86801 -10.21824 -10.18493 -8.46476 -6.56065 -0.08810 0.04024 1.25154 1.29424 1.29866 1.39511 1.92844 2.19969 2.74644 2.90937 3.01555 3.27110 3.43757 3.46932 3.59233 3.75506 3.94796 4.17276 4.22585 4.26238 4.32710 4.42287 4.53892 4.59475 4.64198 4.69470 4.77487 4.86485 4.92879 5.05689 5.06905 5.18592 5.32792 5.40715 5.46614 5.69186 5.98593 6.17259 6.53276 6.92389 7.09194 7.12609 8.68829 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.033907 B = 0.004070 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.587988 B = 6877.807691 C = 7252.333729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.182 3.818 3 H 0.036 0.964 4 C -0.531 4.531 5 H 0.049 0.951 6 C 0.035 3.965 7 N -0.924 5.924 8 Si 0.928 3.072 9 H -0.269 1.269 10 H -0.269 1.269 11 H -0.250 1.250 12 O -0.356 6.356 13 C 0.455 3.545 14 O -0.546 6.546 15 C -0.077 4.077 16 H 0.123 0.877 17 C -0.097 4.097 18 C -0.064 4.064 19 C 0.169 3.831 20 N -0.537 5.537 21 C 0.282 3.718 22 N -0.539 5.539 23 C 0.151 3.849 24 C -0.178 4.178 25 C -0.057 4.057 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.276 0.724 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.221 0.779 35 H 0.192 0.808 36 H 0.091 0.909 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.817 -0.943 20.461 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.129 3.871 3 H 0.054 0.946 4 C -0.568 4.568 5 H 0.067 0.933 6 C -0.166 4.166 7 N -0.562 5.562 8 Si 0.750 3.250 9 H -0.194 1.194 10 H -0.194 1.194 11 H -0.174 1.174 12 O -0.272 6.272 13 C 0.299 3.701 14 O -0.438 6.438 15 C -0.096 4.096 16 H 0.141 0.859 17 C -0.135 4.135 18 C -0.101 4.101 19 C 0.026 3.974 20 N -0.251 5.251 21 C -0.006 4.006 22 N -0.253 5.253 23 C -0.016 4.016 24 C -0.182 4.182 25 C -0.095 4.095 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.238 0.762 35 H 0.209 0.791 36 H 0.109 0.891 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.625 -0.938 21.132 21.162 hybrid contribution -0.101 0.945 -1.436 1.722 sum -0.726 0.007 19.696 19.709 Atomic orbital electron populations 1.22140 0.95360 1.02273 1.00714 1.20787 0.92975 0.92940 0.80438 0.94569 1.20944 1.45772 0.94942 0.95141 0.93286 1.25658 0.93132 1.03184 0.94661 1.69958 1.45436 1.38240 1.02549 0.86037 0.80204 0.80180 0.78537 1.19377 1.19375 1.17364 1.86622 1.75872 1.43738 1.20991 1.24240 0.73699 0.85773 0.86363 1.90577 1.49906 1.18118 1.85156 1.21165 1.01946 0.97992 0.88525 0.85903 1.21460 1.02498 0.96828 0.92721 1.20436 0.99801 0.91358 0.98504 1.21650 0.91325 0.95874 0.88583 1.68445 1.25515 1.14732 1.16388 1.25470 0.88159 0.86650 1.00289 1.68493 1.15875 1.34803 1.06104 1.23710 0.94283 0.91809 0.91773 1.21082 1.00695 0.98012 0.98417 1.20201 0.98627 0.98653 0.92033 0.91793 0.93198 0.91971 0.91500 0.89538 0.90728 0.87586 0.87372 0.76250 0.79114 0.89062 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.10 9.53 71.98 0.69 -5.41 16 2 C 0.18 8.73 2.22 29.84 0.07 8.79 16 3 H 0.04 1.81 4.31 -2.39 -0.01 1.80 16 4 C -0.53 -29.86 9.25 25.60 0.24 -29.63 16 5 H 0.05 3.04 8.06 -2.91 -0.02 3.01 16 6 C 0.03 1.95 5.47 84.66 0.46 2.41 16 7 N -0.92 -55.03 13.96 21.45 0.30 -54.73 16 8 Si 0.93 43.06 26.99 68.60 1.85 44.91 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.25 -11.07 6.82 99.48 0.68 -10.39 16 12 O -0.36 -15.16 9.81 -51.37 -0.50 -15.66 16 13 C 0.45 16.21 7.21 71.24 0.51 16.72 16 14 O -0.55 -22.16 15.07 21.95 0.33 -21.83 16 15 C -0.08 -1.87 2.66 -11.49 -0.03 -1.90 16 16 H 0.12 2.72 8.10 -2.39 -0.02 2.70 16 17 C -0.10 -1.99 4.70 30.63 0.14 -1.84 16 18 C -0.06 -1.07 5.96 29.70 0.18 -0.89 16 19 C 0.17 3.42 6.62 42.21 0.28 3.70 16 20 N -0.54 -11.21 10.32 -188.72 -1.95 -13.16 16 21 C 0.28 5.27 12.29 180.94 2.22 7.50 16 22 N -0.54 -11.04 10.44 -199.93 -2.09 -13.12 16 23 C 0.15 2.81 10.94 84.83 0.93 3.74 16 24 C -0.18 -3.48 5.73 -19.90 -0.11 -3.60 16 25 C -0.06 -1.16 4.98 29.68 0.15 -1.02 16 26 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 27 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.09 1.86 7.82 -2.39 -0.02 1.84 16 31 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16 32 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.22 2.57 8.06 -2.91 -0.02 2.55 16 35 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.09 1.82 8.11 -2.39 -0.02 1.81 16 37 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -68.68 312.93 4.71 -63.98 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.05 Total: 11.04 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 5.72 Total: -1.42 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -3.74 Total: -81.01 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.17 Total: -37.49 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.85 Total: 44.91 kcal Total: -68.68 4.71 -63.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842716857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.750 kcal (2) G-P(sol) polarization free energy of solvation -68.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds