Wall clock time and date at job start Mon Mar 30 2020 20:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47288 * 2 1 4 4 C 1.46896 * 111.00052 * 298.11710 * 3 2 1 5 5 C 1.50693 * 109.47546 * 292.93771 * 4 3 2 6 6 H 1.08001 * 120.00020 * 354.95608 * 5 4 3 7 7 C 1.37881 * 120.00291 * 174.95580 * 5 4 3 8 8 N 1.31513 * 119.99972 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00028 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47184 * 60.00372 * 9 7 5 11 11 H 1.48504 * 109.46927 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47236 * 299.99930 * 9 7 5 13 13 C 1.46891 * 111.00033 * 62.07407 * 3 2 1 14 14 C 1.50704 * 109.47289 * 66.04342 * 13 3 2 15 15 C 1.34056 * 124.93817 * 89.99809 * 14 13 3 16 16 C 1.46572 * 106.16945 * 179.75983 * 15 14 13 17 17 C 1.40640 * 105.45184 * 0.24203 * 16 15 14 18 18 C 1.39338 * 118.04989 * 179.97438 * 17 16 15 19 19 C 1.37680 * 119.04197 * 0.04204 * 18 17 16 20 20 N 1.32327 * 121.58668 * 359.95389 * 19 18 17 21 21 C 1.32207 * 122.01928 * 0.02562 * 20 19 18 22 22 O 1.35615 * 120.00900 * 179.97438 * 21 20 19 23 23 O 1.34366 * 107.38039 * 359.97438 * 17 16 15 24 24 H 1.08998 * 109.47072 * 59.66676 * 1 2 3 25 25 H 1.09001 * 109.47366 * 179.66992 * 1 2 3 26 26 H 1.09000 * 109.46778 * 299.66952 * 1 2 3 27 27 H 1.09000 * 109.46654 * 239.99853 * 2 1 3 28 28 H 1.08998 * 109.47260 * 120.00619 * 2 1 3 29 29 H 1.09007 * 109.47287 * 52.93880 * 4 3 2 30 30 H 1.08999 * 109.47239 * 172.93147 * 4 3 2 31 31 H 0.96997 * 120.00308 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47377 * 306.04896 * 13 3 2 33 33 H 1.09003 * 109.47618 * 186.04499 * 13 3 2 34 34 H 1.08001 * 126.91484 * 0.02732 * 15 14 13 35 35 H 1.08000 * 120.48191 * 180.02562 * 18 17 16 36 36 H 1.08007 * 119.20714 * 179.97438 * 19 18 17 37 37 H 0.96704 * 113.99991 * 270.02655 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5859 2.0967 -1.2095 5 6 2.2649 1.4993 -2.4148 6 1 3.0109 0.7287 -2.2878 7 6 1.9340 1.9364 -3.6800 8 7 1.0260 2.8751 -3.8348 9 14 2.7764 1.1963 -5.1740 10 1 2.5119 -0.2642 -5.2185 11 1 2.2474 1.8334 -6.4067 12 1 4.2398 1.4319 -5.0845 13 6 1.5897 2.0954 1.2117 14 6 2.2534 1.4804 2.4168 15 6 3.4347 1.8634 2.9217 16 6 3.6813 1.0021 4.0818 17 6 2.5694 0.1440 4.1545 18 6 2.5350 -0.7984 5.1803 19 6 3.5806 -0.8515 6.0745 20 7 4.6145 -0.0308 5.9815 21 6 4.7012 0.8823 5.0294 22 8 5.7794 1.7029 4.9727 23 8 1.7478 0.4649 3.1409 24 1 -0.3633 0.5190 -0.8870 25 1 -0.3634 -1.0276 -0.0059 26 1 -0.3633 0.5087 0.8930 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.5052 2.0036 -1.3180 30 1 1.8532 3.1502 -1.1268 31 1 0.7934 3.1829 -4.7247 32 1 0.5072 2.0174 1.3138 33 1 1.8729 3.1453 1.1372 34 1 4.0738 2.6512 2.5512 35 1 1.7002 -1.4773 5.2728 36 1 3.5565 -1.5807 6.8709 37 1 5.6772 2.5220 5.4764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876564422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:44 Heat of formation + Delta-G solvation = -15.481940 kcal Electronic energy + Delta-G solvation = -20980.091940 eV Core-core repulsion = 17723.687818 eV Total energy + Delta-G solvation = -3256.404121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.77183 -40.55504 -38.96870 -37.90815 -34.82342 -33.93369 -32.70288 -31.49231 -30.78712 -28.82637 -26.62438 -25.12427 -24.66358 -23.62146 -22.50033 -21.14931 -19.88601 -18.54780 -18.36291 -17.76020 -17.66324 -16.95703 -16.65601 -16.46055 -16.03366 -15.75493 -15.53036 -14.72039 -14.67559 -14.22237 -13.91128 -13.85172 -13.48165 -13.21365 -13.10487 -12.79523 -12.78444 -12.62580 -12.58661 -12.41443 -11.93907 -11.63784 -11.38215 -11.20054 -10.74658 -10.58841 -10.45349 -9.24691 -9.02023 -8.18778 -6.27272 -0.41264 0.12178 1.16686 1.42279 1.43976 1.47679 1.52010 2.41454 2.44625 2.67032 3.14422 3.17732 3.36274 3.51339 3.79044 3.98526 4.07381 4.19635 4.22666 4.35806 4.44491 4.49400 4.61533 4.63172 4.74762 4.86887 4.90887 4.97528 5.17890 5.21795 5.32264 5.34767 5.46296 5.66346 5.93734 6.04968 6.25691 6.54107 6.56348 6.83661 6.87159 7.41570 8.91239 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028347 B = 0.003944 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.511556 B = 7098.244211 C = 7473.700060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.063 3.937 3 N -0.539 5.539 4 C 0.204 3.796 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.009 3.991 8 N -0.930 5.930 9 Si 0.961 3.039 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.123 3.877 14 C 0.046 3.954 15 C -0.173 4.173 16 C -0.216 4.216 17 C 0.082 3.918 18 C -0.163 4.163 19 C 0.134 3.866 20 N -0.530 5.530 21 C 0.360 3.640 22 O -0.486 6.486 23 O -0.193 6.193 24 H 0.042 0.958 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.064 0.936 29 H -0.010 1.010 30 H 0.010 0.990 31 H 0.264 0.736 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.172 0.828 35 H 0.177 0.823 36 H 0.214 0.786 37 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.339 -4.787 19.463 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.065 4.065 3 N -0.263 5.263 4 C 0.079 3.921 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.190 4.190 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.197 1.197 13 C -0.005 4.005 14 C -0.001 4.001 15 C -0.194 4.194 16 C -0.220 4.220 17 C 0.027 3.973 18 C -0.183 4.183 19 C -0.016 4.016 20 N -0.251 5.251 21 C 0.176 3.824 22 O -0.296 6.296 23 O -0.093 6.093 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.008 0.992 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.189 0.811 35 H 0.195 0.805 36 H 0.230 0.770 37 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 2.403 -5.281 19.491 20.336 hybrid contribution -1.221 0.553 -1.496 2.009 sum 1.182 -4.727 17.995 18.643 Atomic orbital electron populations 1.22238 0.97714 1.02461 1.01104 1.21932 0.93459 0.90109 1.00999 1.62307 1.59768 1.02785 1.01489 1.19474 0.93655 0.92873 0.86141 1.21359 1.22011 1.21391 0.91204 0.92522 1.25754 0.95802 0.95545 1.01889 1.70042 1.33124 1.30210 1.23713 0.85563 0.78873 0.78701 0.78253 1.19531 1.20818 1.19664 1.20730 0.97688 0.97730 0.84352 1.22424 0.94864 0.88721 0.94118 1.22274 0.97076 1.03913 0.96151 1.21048 0.97515 1.02176 1.01295 1.20212 0.89136 0.97260 0.90669 1.21437 1.04091 0.99480 0.93288 1.22973 0.85817 0.95399 0.97435 1.67386 1.27003 1.07179 1.23582 1.18627 0.84329 0.90721 0.88753 1.84690 1.36104 1.34629 1.74223 1.83941 1.44732 1.45547 1.35045 0.93936 0.91026 0.92342 0.91928 0.91809 0.99207 0.97221 0.92695 0.92419 0.86934 0.81077 0.80545 0.76988 0.71634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.19 9.26 71.98 0.67 -5.53 16 2 C 0.06 2.44 5.71 86.30 0.49 2.94 16 3 N -0.54 -22.46 4.68 -905.40 -4.24 -26.70 16 4 C 0.20 10.25 4.52 85.56 0.39 10.64 16 5 C -0.52 -28.77 8.40 25.60 0.21 -28.55 16 6 H 0.06 3.13 7.38 -2.91 -0.02 3.11 16 7 C 0.01 0.47 5.46 84.66 0.46 0.94 16 8 N -0.93 -54.29 13.29 21.45 0.28 -54.00 16 9 Si 0.96 43.79 29.54 68.60 2.03 45.81 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 C 0.12 4.14 5.26 85.56 0.45 4.59 16 14 C 0.05 1.44 5.82 24.73 0.14 1.58 16 15 C -0.17 -5.12 11.00 23.49 0.26 -4.86 16 16 C -0.22 -6.11 6.38 -20.16 -0.13 -6.23 16 17 C 0.08 2.21 7.49 23.12 0.17 2.39 16 18 C -0.16 -3.10 10.13 22.40 0.23 -2.87 16 19 C 0.13 2.34 11.13 84.49 0.94 3.28 16 20 N -0.53 -12.68 10.38 -308.46 -3.20 -15.88 16 21 C 0.36 9.39 7.80 85.00 0.66 10.06 16 22 O -0.49 -11.13 13.57 -89.26 -1.21 -12.34 16 23 O -0.19 -5.82 9.86 -5.80 -0.06 -5.88 16 24 H 0.04 1.73 6.28 -2.39 -0.01 1.72 16 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 1.87 6.34 -2.39 -0.02 1.86 16 27 H 0.06 2.67 6.98 -2.39 -0.02 2.66 16 28 H 0.06 2.30 6.67 -2.39 -0.02 2.29 16 29 H -0.01 -0.52 6.01 -2.38 -0.01 -0.53 16 30 H 0.01 0.52 7.91 -2.39 -0.02 0.50 16 31 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.06 1.88 6.07 -2.38 -0.01 1.86 16 33 H 0.11 3.56 7.92 -2.39 -0.02 3.54 16 34 H 0.17 4.61 8.06 -2.91 -0.02 4.59 16 35 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.42 5.03 9.06 -74.05 -0.67 4.36 16 Total: -1.00 -68.33 312.23 -1.01 -69.34 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.44 Total: 11.29 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 4.95 Total: -11.64 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -7.16 Total: -96.59 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -1.27 Total: -18.22 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -68.33 -1.01 -69.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876564422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.858 kcal (2) G-P(sol) polarization free energy of solvation -68.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds