Wall clock time and date at job start Mon Mar 30 2020 20:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47402 * 2 1 4 4 C 1.50705 * 109.47264 * 240.00245 * 2 1 3 5 5 H 1.08000 * 119.99736 * 240.00112 * 4 2 1 6 6 C 1.37872 * 119.99735 * 59.99734 * 4 2 1 7 7 N 1.31516 * 120.00635 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99919 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47094 * 89.99509 * 8 6 4 10 10 H 1.48498 * 109.47105 * 209.99992 * 8 6 4 11 11 H 1.48503 * 109.46559 * 329.99967 * 8 6 4 12 12 C 1.50700 * 109.47159 * 119.99953 * 2 1 3 13 13 O 1.20829 * 119.99585 * 120.00493 * 12 2 1 14 14 O 1.34227 * 120.00189 * 299.99616 * 12 2 1 15 15 C 1.45198 * 117.00264 * 179.97438 * 14 12 2 16 16 C 1.52991 * 109.47152 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.47164 * 180.02562 * 16 15 14 18 18 H 1.08995 * 110.05474 * 306.41790 * 17 16 15 19 19 C 1.54267 * 110.03258 * 67.83142 * 17 16 15 20 20 C 1.54889 * 104.19385 * 142.89751 * 19 17 16 21 21 C 1.54892 * 102.74991 * 322.05789 * 20 19 17 22 22 C 1.53876 * 110.03596 * 185.00058 * 17 16 15 23 23 F 1.39904 * 110.03063 * 359.97438 * 22 17 16 24 24 F 1.39894 * 110.03071 * 121.42664 * 22 17 16 25 25 H 1.09005 * 109.47025 * 59.99742 * 1 2 3 26 26 H 1.09003 * 109.47402 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46940 * 299.99876 * 1 2 3 28 28 H 0.96995 * 120.00193 * 180.02562 * 7 6 4 29 29 H 1.09011 * 109.46799 * 60.00219 * 15 14 12 30 30 H 1.08998 * 109.47136 * 300.00606 * 15 14 12 31 31 H 1.09002 * 109.47534 * 60.00229 * 16 15 14 32 32 H 1.09003 * 109.47311 * 299.99717 * 16 15 14 33 33 H 1.09005 * 110.48840 * 261.57444 * 19 17 16 34 34 H 1.09001 * 110.48280 * 24.22281 * 19 17 16 35 35 H 1.09004 * 110.75452 * 203.74370 * 20 19 17 36 36 H 1.08994 * 110.76011 * 80.37558 * 20 19 17 37 37 H 1.09000 * 110.48309 * 279.26358 * 21 20 19 38 38 H 1.09003 * 110.48387 * 156.62372 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4865 -0.1412 -5.1123 11 1 3.6293 -1.7581 -3.7122 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1195 14 8 1.7081 -0.2518 2.4496 15 6 2.2268 -0.9863 3.5896 16 6 1.7549 -0.3197 4.8833 17 6 2.3020 -1.0933 6.0847 18 1 2.0387 -2.1477 6.0016 19 6 3.8347 -0.9358 6.1612 20 6 4.1325 -0.8511 7.6788 21 6 2.9419 -0.0178 8.2148 22 6 1.7344 -0.5097 7.3904 23 9 0.8810 0.5617 7.1053 24 9 1.0429 -1.4995 8.0970 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7088 1.1614 -3.4844 29 1 3.3164 -0.9860 3.5568 30 1 1.8626 -2.0131 3.5565 31 1 0.6653 -0.3203 4.9160 32 1 2.1188 0.7072 4.9167 33 1 4.3296 -1.8026 5.7231 34 1 4.1496 -0.0211 5.6590 35 1 5.0764 -0.3365 7.8591 36 1 4.1413 -1.8447 8.1268 37 1 3.1128 1.0451 8.0442 38 1 2.7854 -0.2146 9.2754 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884575045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:12 Heat of formation + Delta-G solvation = -216.678842 kcal Electronic energy + Delta-G solvation = -21649.906786 eV Core-core repulsion = 17934.088926 eV Total energy + Delta-G solvation = -3715.817860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.132 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.11857 -47.17209 -39.60092 -38.10167 -35.80358 -33.87783 -32.77127 -30.57198 -28.18664 -27.51834 -25.19918 -23.60266 -22.37214 -21.48341 -20.37323 -19.72164 -17.78238 -17.13862 -16.61308 -16.27478 -16.02585 -15.86759 -15.40655 -14.84311 -14.53598 -14.26146 -14.20039 -13.92628 -13.50723 -13.11543 -12.84187 -12.68238 -12.26896 -12.17567 -11.81432 -11.66201 -11.57200 -11.27591 -11.10201 -11.03722 -11.00316 -10.80330 -10.72961 -10.68129 -10.33695 -10.05404 -9.97482 -9.11218 -9.03892 -8.44757 -6.10288 -4.15853 3.25275 3.29663 3.32524 3.36164 3.42922 3.58997 3.65883 3.89461 4.12211 4.41493 4.65758 4.73124 4.82539 4.94589 5.00196 5.02956 5.19815 5.23111 5.30482 5.38522 5.50485 5.55230 5.63223 5.68000 5.82124 5.97762 6.01009 6.24727 6.67442 6.88241 6.89354 7.23379 7.44508 7.74795 7.94962 8.14674 8.85310 8.94090 9.49722 10.97132 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.040419 B = 0.003293 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.571281 B = 8501.145392 C = 8855.991796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.465 3.535 13 O -0.519 6.519 14 O -0.366 6.366 15 C 0.065 3.935 16 C -0.111 4.111 17 C -0.129 4.129 18 H 0.103 0.897 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.161 4.161 22 C 0.285 3.715 23 F -0.194 7.194 24 F -0.199 7.199 25 H 0.096 0.904 26 H 0.031 0.969 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.635 -0.790 20.816 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.406 6.406 14 O -0.284 6.284 15 C -0.010 4.010 16 C -0.148 4.148 17 C -0.148 4.148 18 H 0.122 0.878 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.199 4.199 22 C 0.249 3.751 23 F -0.175 7.175 24 F -0.180 7.180 25 H 0.114 0.886 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.727 -0.979 20.678 21.034 hybrid contribution 0.099 -0.584 -0.672 0.896 sum 3.826 -1.563 20.005 20.428 Atomic orbital electron populations 1.21733 0.95606 1.00039 1.01761 1.18764 0.94877 0.96988 0.85584 0.91805 1.21138 1.31911 1.13220 0.88807 0.90657 1.24938 0.94925 0.95004 0.99128 1.69879 1.36560 1.22783 1.23855 0.86379 0.79440 0.79222 0.81758 1.20527 1.21125 1.19680 1.25351 0.76509 0.83197 0.83951 1.90491 1.36454 1.26803 1.86821 1.86607 1.70498 1.55838 1.15453 1.22756 0.98777 0.95409 0.84019 1.21523 1.02478 1.00007 0.90799 1.22723 0.97339 1.02281 0.92473 0.87842 1.22536 0.93033 1.03882 0.96559 1.22488 0.97651 1.00438 0.95464 1.23367 0.93369 1.02594 1.00612 1.21802 0.84633 0.76580 0.92111 1.93016 1.73677 1.56627 1.94192 1.93012 1.81974 1.62636 1.80390 0.88567 0.95020 0.95728 0.92689 0.91683 0.91918 0.89979 0.89899 0.89841 0.89940 0.89851 0.90480 0.88247 0.89026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.90 37.15 0.33 -2.87 16 2 C 0.06 1.46 2.74 -92.92 -0.25 1.20 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.48 8.37 -34.44 -0.29 -14.77 16 5 H 0.08 2.21 6.76 -52.49 -0.35 1.86 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.47 11.03 7.25 36.01 0.26 11.29 16 13 O -0.52 -13.26 15.21 -18.75 -0.29 -13.55 16 14 O -0.37 -7.32 10.12 -39.25 -0.40 -7.72 16 15 C 0.06 1.01 5.32 37.15 0.20 1.20 16 16 C -0.11 -1.36 4.07 -26.73 -0.11 -1.47 16 17 C -0.13 -1.27 2.78 -89.50 -0.25 -1.52 16 18 H 0.10 1.00 8.02 -51.93 -0.42 0.58 16 19 C -0.12 -0.98 5.53 -25.07 -0.14 -1.12 16 20 C -0.12 -0.77 6.91 -24.74 -0.17 -0.95 16 21 C -0.16 -1.17 6.40 -25.07 -0.16 -1.33 16 22 C 0.28 2.88 2.53 -25.61 -0.06 2.82 16 23 F -0.19 -2.34 15.45 2.25 0.03 -2.30 16 24 F -0.20 -2.29 17.04 2.25 0.04 -2.25 16 25 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.06 0.96 7.50 -51.92 -0.39 0.58 16 30 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.08 1.07 7.76 -51.93 -0.40 0.67 16 32 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.67 7.76 -51.93 -0.40 0.26 16 35 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.65 8.12 -51.93 -0.42 0.23 16 38 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -30.49 319.44 -6.56 -37.05 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.63 Total: -2.32 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -0.74 Total: -5.90 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.63 Total: -24.30 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.68 Total: -21.27 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.07 Total: -4.56 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.49 -6.56 -37.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884575045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.629 kcal (2) G-P(sol) polarization free energy of solvation -30.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds