Wall clock time and date at job start Mon Mar 30 2020 20:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47402 * 2 1 4 4 C 1.50705 * 109.47264 * 240.00245 * 2 1 3 5 5 H 1.08000 * 119.99736 * 240.00112 * 4 2 1 6 6 C 1.37872 * 119.99735 * 59.99734 * 4 2 1 7 7 N 1.31516 * 120.00635 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99919 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47094 * 89.99509 * 8 6 4 10 10 H 1.48498 * 109.47105 * 209.99992 * 8 6 4 11 11 H 1.48503 * 109.46559 * 329.99967 * 8 6 4 12 12 C 1.50700 * 109.47159 * 119.99953 * 2 1 3 13 13 O 1.20829 * 119.99585 * 120.00493 * 12 2 1 14 14 O 1.34227 * 120.00189 * 299.99616 * 12 2 1 15 15 C 1.45198 * 117.00264 * 179.97438 * 14 12 2 16 16 C 1.52991 * 109.47152 * 180.02562 * 15 14 12 17 17 C 1.53004 * 109.47164 * 180.02562 * 16 15 14 18 18 H 1.08995 * 110.05474 * 306.41790 * 17 16 15 19 19 C 1.54267 * 110.03258 * 67.83142 * 17 16 15 20 20 C 1.54889 * 104.19385 * 142.89751 * 19 17 16 21 21 C 1.54892 * 102.74991 * 322.05789 * 20 19 17 22 22 C 1.53876 * 110.03596 * 185.00058 * 17 16 15 23 23 F 1.39904 * 110.03063 * 359.97438 * 22 17 16 24 24 F 1.39894 * 110.03071 * 121.42664 * 22 17 16 25 25 H 1.09005 * 109.47025 * 59.99742 * 1 2 3 26 26 H 1.09003 * 109.47402 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46940 * 299.99876 * 1 2 3 28 28 H 0.96995 * 120.00193 * 180.02562 * 7 6 4 29 29 H 1.09011 * 109.46799 * 60.00219 * 15 14 12 30 30 H 1.08998 * 109.47136 * 300.00606 * 15 14 12 31 31 H 1.09002 * 109.47534 * 60.00229 * 16 15 14 32 32 H 1.09003 * 109.47311 * 299.99717 * 16 15 14 33 33 H 1.09005 * 110.48840 * 261.57444 * 19 17 16 34 34 H 1.09001 * 110.48280 * 24.22281 * 19 17 16 35 35 H 1.09004 * 110.75452 * 203.74370 * 20 19 17 36 36 H 1.08994 * 110.76011 * 80.37558 * 20 19 17 37 37 H 1.09000 * 110.48309 * 279.26358 * 21 20 19 38 38 H 1.09003 * 110.48387 * 156.62372 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4865 -0.1412 -5.1123 11 1 3.6293 -1.7581 -3.7122 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1195 14 8 1.7081 -0.2518 2.4496 15 6 2.2268 -0.9863 3.5896 16 6 1.7549 -0.3197 4.8833 17 6 2.3020 -1.0933 6.0847 18 1 2.0387 -2.1477 6.0016 19 6 3.8347 -0.9358 6.1612 20 6 4.1325 -0.8511 7.6788 21 6 2.9419 -0.0178 8.2148 22 6 1.7344 -0.5097 7.3904 23 9 0.8810 0.5617 7.1053 24 9 1.0429 -1.4995 8.0970 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7088 1.1614 -3.4844 29 1 3.3164 -0.9860 3.5568 30 1 1.8626 -2.0131 3.5565 31 1 0.6653 -0.3203 4.9160 32 1 2.1188 0.7072 4.9167 33 1 4.3296 -1.8026 5.7231 34 1 4.1496 -0.0211 5.6590 35 1 5.0764 -0.3365 7.8591 36 1 4.1413 -1.8447 8.1268 37 1 3.1128 1.0451 8.0442 38 1 2.7854 -0.2146 9.2754 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884575045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:11 Heat of formation + Delta-G solvation = -231.925530 kcal Electronic energy + Delta-G solvation = -21650.567932 eV Core-core repulsion = 17934.088926 eV Total energy + Delta-G solvation = -3716.479006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.96485 -48.03693 -41.35845 -38.93071 -37.44418 -35.92713 -33.79402 -32.57273 -28.85381 -28.52973 -27.28609 -25.20023 -23.67486 -22.17286 -21.64599 -21.08653 -18.74336 -18.55050 -18.14139 -17.77137 -17.39239 -17.27451 -16.92016 -16.10378 -15.73261 -15.37454 -15.06812 -14.98135 -14.66911 -14.46947 -14.33668 -14.02120 -13.57968 -13.28379 -13.04572 -12.98746 -12.77966 -12.61823 -12.61686 -12.43127 -12.30028 -12.20914 -12.05567 -11.95049 -11.65637 -11.59131 -11.40951 -11.11642 -11.01932 -10.53702 -8.20393 -6.34016 1.41315 1.42865 1.44232 1.54276 1.83820 2.43294 2.74215 2.94111 3.09669 3.18154 3.32237 3.83025 3.90349 3.99682 4.15346 4.20526 4.21467 4.28482 4.39445 4.47630 4.50850 4.67693 4.78132 4.87941 4.89027 4.90896 5.01240 5.06095 5.07281 5.13252 5.30125 5.38531 5.48924 5.68678 5.87587 6.09551 6.72598 7.03892 7.35042 8.86158 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.040419 B = 0.003293 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.571281 B = 8501.145392 C = 8855.991796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.048 3.952 3 H 0.052 0.948 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.965 3.035 9 H -0.273 1.273 10 H -0.274 1.274 11 H -0.275 1.275 12 C 0.473 3.527 13 O -0.542 6.542 14 O -0.364 6.364 15 C 0.060 3.940 16 C -0.101 4.101 17 C -0.127 4.127 18 H 0.104 0.896 19 C -0.124 4.124 20 C -0.115 4.115 21 C -0.156 4.156 22 C 0.275 3.725 23 F -0.208 7.208 24 F -0.209 7.209 25 H 0.078 0.922 26 H 0.028 0.972 27 H 0.048 0.952 28 H 0.268 0.732 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.387 -0.899 21.725 22.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 H 0.070 0.930 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.319 3.681 13 O -0.432 6.432 14 O -0.282 6.282 15 C -0.013 4.013 16 C -0.139 4.139 17 C -0.146 4.146 18 H 0.123 0.877 19 C -0.161 4.161 20 C -0.152 4.152 21 C -0.194 4.194 22 C 0.239 3.761 23 F -0.189 7.189 24 F -0.190 7.190 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.126 0.874 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.465 -1.071 21.613 22.096 hybrid contribution -0.164 -0.530 -0.877 1.037 sum 4.301 -1.601 20.737 21.238 Atomic orbital electron populations 1.21568 0.94474 0.99863 1.01996 1.18693 0.95856 0.96250 0.86279 0.93034 1.21262 1.32687 1.13309 0.90496 0.92491 1.25653 0.94879 0.95630 1.01614 1.69960 1.36678 1.23380 1.24781 0.85456 0.78739 0.78417 0.78461 1.19815 1.19884 1.19939 1.24817 0.76000 0.82539 0.84781 1.90470 1.37502 1.27754 1.87450 1.86547 1.70232 1.56048 1.15350 1.23123 0.99433 0.95414 0.83372 1.21464 1.01942 1.00390 0.90065 1.22720 0.98801 1.01856 0.91240 0.87725 1.22573 0.91283 1.04117 0.98149 1.22498 0.98014 1.00935 0.93791 1.23409 0.92043 1.03184 1.00784 1.22206 0.85114 0.76125 0.92654 1.92986 1.74333 1.57271 1.94358 1.92990 1.82354 1.63107 1.80568 0.90345 0.95289 0.93345 0.92231 0.90733 0.91912 0.90929 0.89446 0.89387 0.89929 0.87926 0.89828 0.87396 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.90 71.98 0.64 -5.17 16 2 C 0.05 2.50 2.74 -12.29 -0.03 2.47 16 3 H 0.05 2.78 8.14 -2.39 -0.02 2.76 16 4 C -0.54 -30.88 8.37 25.60 0.21 -30.66 16 5 H 0.06 3.41 6.76 -2.91 -0.02 3.39 16 6 C 0.02 1.22 5.30 84.65 0.45 1.67 16 7 N -0.91 -50.73 11.32 21.45 0.24 -50.49 16 8 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 9 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.47 22.53 7.25 71.24 0.52 23.05 16 13 O -0.54 -27.94 15.21 21.95 0.33 -27.60 16 14 O -0.36 -14.42 10.12 -51.39 -0.52 -14.94 16 15 C 0.06 1.82 5.32 71.98 0.38 2.20 16 16 C -0.10 -2.38 4.07 30.59 0.12 -2.26 16 17 C -0.13 -2.33 2.78 -10.07 -0.03 -2.36 16 18 H 0.10 1.89 8.02 -2.39 -0.02 1.87 16 19 C -0.12 -1.71 5.53 31.67 0.18 -1.53 16 20 C -0.12 -1.12 6.91 31.89 0.22 -0.90 16 21 C -0.16 -1.88 6.40 31.67 0.20 -1.68 16 22 C 0.27 5.17 2.53 31.32 0.08 5.25 16 23 F -0.21 -4.83 15.45 44.97 0.69 -4.14 16 24 F -0.21 -4.58 17.04 44.97 0.77 -3.81 16 25 H 0.08 4.05 6.07 -2.38 -0.01 4.04 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 2.03 8.11 -2.38 -0.02 2.01 16 28 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.07 2.13 7.50 -2.38 -0.02 2.11 16 30 H 0.06 1.91 8.13 -2.39 -0.02 1.89 16 31 H 0.07 1.85 7.76 -2.39 -0.02 1.83 16 32 H 0.09 1.99 7.96 -2.39 -0.02 1.97 16 33 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.08 1.16 7.76 -2.39 -0.02 1.14 16 35 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 37 H 0.11 1.13 8.12 -2.39 -0.02 1.12 16 38 H 0.10 1.03 8.11 -2.39 -0.02 1.01 16 Total: -1.00 -64.62 319.44 7.54 -57.08 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 1.05 Total: 7.93 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 2.94 Total: -9.92 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.24 Total: -50.49 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.19 Total: -42.55 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 1.46 Total: -7.95 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -64.62 7.54 -57.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884575045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.843 kcal (2) G-P(sol) polarization free energy of solvation -64.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds