Wall clock time and date at job start Mon Mar 30 2020 20:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.46996 * 2 1 4 4 C 1.50705 * 109.46845 * 119.99722 * 2 1 3 5 5 H 1.07998 * 119.99769 * 120.00478 * 4 2 1 6 6 C 1.37879 * 119.99872 * 299.99861 * 4 2 1 7 7 N 1.31514 * 120.00060 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99729 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46955 * 89.99942 * 8 6 4 10 10 H 1.48495 * 109.47084 * 210.00238 * 8 6 4 11 11 H 1.48498 * 109.47031 * 330.00049 * 8 6 4 12 12 C 1.50693 * 109.47206 * 239.99663 * 2 1 3 13 13 O 1.20824 * 120.00048 * 240.00132 * 12 2 1 14 14 O 1.34235 * 120.00281 * 60.00103 * 12 2 1 15 15 C 1.45194 * 117.00385 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47339 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 14 18 18 H 1.08995 * 110.01931 * 54.29515 * 17 16 15 19 19 C 1.54268 * 110.03010 * 292.90312 * 17 16 15 20 20 C 1.54962 * 104.16016 * 217.13690 * 19 17 16 21 21 C 1.54891 * 102.77626 * 37.89151 * 20 19 17 22 22 C 1.53876 * 110.02883 * 175.68988 * 17 16 15 23 23 F 1.39903 * 110.03223 * 238.56216 * 22 17 16 24 24 F 1.39892 * 110.03572 * 359.97438 * 22 17 16 25 25 H 1.08998 * 109.47481 * 299.99917 * 1 2 3 26 26 H 1.08994 * 109.47378 * 60.00608 * 1 2 3 27 27 H 1.09003 * 109.47546 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99411 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47239 * 59.99675 * 15 14 12 30 30 H 1.08998 * 109.46869 * 300.00400 * 15 14 12 31 31 H 1.09002 * 109.47153 * 59.99705 * 16 15 14 32 32 H 1.09001 * 109.46832 * 299.99896 * 16 15 14 33 33 H 1.09001 * 110.49106 * 335.78894 * 19 17 16 34 34 H 1.09005 * 110.48252 * 98.43414 * 19 17 16 35 35 H 1.08996 * 110.72203 * 279.57767 * 20 19 17 36 36 H 1.09000 * 110.76267 * 156.22272 * 20 19 17 37 37 H 1.09004 * 110.48670 * 203.40017 * 21 20 19 38 38 H 1.09008 * 110.59690 * 80.81651 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.6304 -0.5438 4.4119 10 1 1.3443 -0.9488 5.1123 11 1 2.4878 -2.5652 3.7123 12 6 2.0323 -0.7104 -1.2304 13 8 2.7269 -1.6928 -1.1194 14 8 1.7081 -0.2519 -2.4496 15 6 2.2267 -0.9865 -3.5896 16 6 1.7548 -0.3200 -4.8834 17 6 2.3009 -1.0945 -6.0846 18 1 2.0258 -2.1463 -6.0068 19 6 3.8356 -0.9532 -6.1510 20 6 4.1429 -0.8645 -7.6673 21 6 2.9638 -0.0171 -8.2067 22 6 1.7466 -0.4999 -7.3912 23 9 1.0493 -1.4799 -8.1058 24 9 0.9017 0.5781 -7.1066 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7087 1.1614 3.4844 29 1 1.8626 -2.0133 -3.5564 30 1 3.3162 -0.9863 -3.5567 31 1 2.1186 0.7069 -4.9168 32 1 0.6653 -0.3207 -4.9159 33 1 4.1574 -0.0441 -5.6429 34 1 4.3184 -1.8272 -5.7137 35 1 4.1441 -1.8564 -8.1192 36 1 5.0928 -0.3588 -7.8401 37 1 2.8114 -0.2081 -9.2690 38 1 3.1431 1.0440 -8.0327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884575046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:14 Heat of formation + Delta-G solvation = -216.696961 kcal Electronic energy + Delta-G solvation = -21650.963749 eV Core-core repulsion = 17935.145103 eV Total energy + Delta-G solvation = -3715.818646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.132 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.11949 -47.17077 -39.60153 -38.09815 -35.80284 -33.87803 -32.76951 -30.57222 -28.18505 -27.51744 -25.19920 -23.60445 -22.37907 -21.48058 -20.36696 -19.72235 -17.78250 -17.13936 -16.61471 -16.27582 -16.02574 -15.86351 -15.40853 -14.84175 -14.53597 -14.26083 -14.20170 -13.92231 -13.50683 -13.11456 -12.84131 -12.68335 -12.27178 -12.17531 -11.81356 -11.66499 -11.57056 -11.27699 -11.09480 -11.02833 -11.00473 -10.80362 -10.74403 -10.69686 -10.31636 -10.05476 -9.97476 -9.11028 -9.04180 -8.44775 -6.10357 -4.15853 3.25160 3.29820 3.32361 3.36121 3.43067 3.58969 3.65882 3.89607 4.12159 4.41488 4.65726 4.73150 4.82486 4.94589 5.00190 5.02945 5.19896 5.23101 5.30568 5.38479 5.50458 5.55255 5.63257 5.68023 5.82104 5.97759 6.01092 6.24737 6.67489 6.88306 6.89395 7.23393 7.44519 7.74852 7.94963 8.14697 8.85291 8.94079 9.49687 10.97072 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.040411 B = 0.003294 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.722215 B = 8497.706322 C = 8855.121778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.513 4.513 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.465 3.535 13 O -0.519 6.519 14 O -0.366 6.366 15 C 0.065 3.935 16 C -0.111 4.111 17 C -0.129 4.129 18 H 0.103 0.897 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.161 4.161 22 C 0.285 3.715 23 F -0.199 7.199 24 F -0.194 7.194 25 H 0.096 0.904 26 H 0.024 0.976 27 H 0.031 0.969 28 H 0.263 0.737 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.648 -0.818 -20.794 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.551 4.551 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.310 3.690 13 O -0.406 6.406 14 O -0.284 6.284 15 C -0.010 4.010 16 C -0.148 4.148 17 C -0.148 4.148 18 H 0.122 0.878 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.199 4.199 22 C 0.249 3.751 23 F -0.180 7.180 24 F -0.175 7.175 25 H 0.114 0.886 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.731 -1.013 -20.656 21.014 hybrid contribution 0.119 -0.564 0.670 0.884 sum 3.851 -1.577 -19.986 20.414 Atomic orbital electron populations 1.21730 0.95597 1.00043 1.01761 1.18761 0.94888 0.96980 0.85587 0.91817 1.21139 1.31884 1.13252 0.88806 0.90658 1.24940 0.94893 0.95040 0.99133 1.69883 1.36474 1.22859 1.23851 0.86376 0.78491 0.80161 0.81752 1.20528 1.21124 1.19687 1.25350 0.76509 0.83196 0.83949 1.90489 1.36460 1.26794 1.86819 1.86608 1.70501 1.55839 1.15454 1.22755 0.98778 0.95410 0.84021 1.21522 1.02473 1.00010 0.90803 1.22722 0.97422 1.02210 0.92463 0.87846 1.22547 0.92981 1.03900 0.96582 1.22497 0.97739 1.00331 0.95460 1.23365 0.93306 1.02583 1.00683 1.21804 0.84715 0.76616 0.91987 1.93014 1.81709 1.63295 1.80005 1.93012 1.74140 1.56162 1.94193 0.88564 0.95730 0.95016 0.92692 0.91921 0.91679 0.89891 0.89997 0.89941 0.89833 0.90480 0.89851 0.89036 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.90 37.16 0.33 -2.87 16 2 C 0.06 1.46 2.74 -92.93 -0.25 1.20 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.48 8.37 -34.44 -0.29 -14.77 16 5 H 0.08 2.21 6.76 -52.49 -0.35 1.86 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.92 11.32 55.43 0.63 -24.29 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.47 11.03 7.25 36.00 0.26 11.29 16 13 O -0.52 -13.26 15.21 -18.75 -0.29 -13.54 16 14 O -0.37 -7.32 10.12 -39.27 -0.40 -7.72 16 15 C 0.06 1.01 5.31 37.16 0.20 1.20 16 16 C -0.11 -1.36 4.06 -26.73 -0.11 -1.47 16 17 C -0.13 -1.27 2.78 -89.50 -0.25 -1.52 16 18 H 0.10 1.00 8.02 -51.93 -0.42 0.58 16 19 C -0.12 -0.98 5.50 -25.03 -0.14 -1.12 16 20 C -0.12 -0.78 6.91 -24.70 -0.17 -0.95 16 21 C -0.16 -1.17 6.40 -25.07 -0.16 -1.33 16 22 C 0.28 2.88 2.53 -25.61 -0.06 2.82 16 23 F -0.20 -2.29 17.04 2.25 0.04 -2.25 16 24 F -0.19 -2.34 15.46 2.25 0.03 -2.30 16 25 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 26 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 30 H 0.06 0.96 7.48 -51.93 -0.39 0.58 16 31 H 0.08 1.00 7.97 -51.93 -0.41 0.58 16 32 H 0.08 1.07 7.78 -51.93 -0.40 0.66 16 33 H 0.08 0.67 7.77 -51.93 -0.40 0.27 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.58 8.11 -51.93 -0.42 0.16 16 38 H 0.10 0.65 8.12 -51.92 -0.42 0.23 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -30.49 319.42 -6.56 -37.05 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -5.63 Total: -2.32 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.74 Total: -5.91 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.63 Total: -24.29 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.68 Total: -21.27 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.07 Total: -4.56 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.49 -6.56 -37.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884575046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.650 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds