Wall clock time and date at job start Mon Mar 30 2020 20:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.46996 * 2 1 4 4 C 1.50705 * 109.46845 * 119.99722 * 2 1 3 5 5 H 1.07998 * 119.99769 * 120.00478 * 4 2 1 6 6 C 1.37879 * 119.99872 * 299.99861 * 4 2 1 7 7 N 1.31514 * 120.00060 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99729 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46955 * 89.99942 * 8 6 4 10 10 H 1.48495 * 109.47084 * 210.00238 * 8 6 4 11 11 H 1.48498 * 109.47031 * 330.00049 * 8 6 4 12 12 C 1.50693 * 109.47206 * 239.99663 * 2 1 3 13 13 O 1.20824 * 120.00048 * 240.00132 * 12 2 1 14 14 O 1.34235 * 120.00281 * 60.00103 * 12 2 1 15 15 C 1.45194 * 117.00385 * 180.02562 * 14 12 2 16 16 C 1.52997 * 109.47339 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 14 18 18 H 1.08995 * 110.01931 * 54.29515 * 17 16 15 19 19 C 1.54268 * 110.03010 * 292.90312 * 17 16 15 20 20 C 1.54962 * 104.16016 * 217.13690 * 19 17 16 21 21 C 1.54891 * 102.77626 * 37.89151 * 20 19 17 22 22 C 1.53876 * 110.02883 * 175.68988 * 17 16 15 23 23 F 1.39903 * 110.03223 * 238.56216 * 22 17 16 24 24 F 1.39892 * 110.03572 * 359.97438 * 22 17 16 25 25 H 1.08998 * 109.47481 * 299.99917 * 1 2 3 26 26 H 1.08994 * 109.47378 * 60.00608 * 1 2 3 27 27 H 1.09003 * 109.47546 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99411 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47239 * 59.99675 * 15 14 12 30 30 H 1.08998 * 109.46869 * 300.00400 * 15 14 12 31 31 H 1.09002 * 109.47153 * 59.99705 * 16 15 14 32 32 H 1.09001 * 109.46832 * 299.99896 * 16 15 14 33 33 H 1.09001 * 110.49106 * 335.78894 * 19 17 16 34 34 H 1.09005 * 110.48252 * 98.43414 * 19 17 16 35 35 H 1.08996 * 110.72203 * 279.57767 * 20 19 17 36 36 H 1.09000 * 110.76267 * 156.22272 * 20 19 17 37 37 H 1.09004 * 110.48670 * 203.40017 * 21 20 19 38 38 H 1.09008 * 110.59690 * 80.81651 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3223 -1.1194 4.0081 9 1 3.6304 -0.5438 4.4119 10 1 1.3443 -0.9488 5.1123 11 1 2.4878 -2.5652 3.7123 12 6 2.0323 -0.7104 -1.2304 13 8 2.7269 -1.6928 -1.1194 14 8 1.7081 -0.2519 -2.4496 15 6 2.2267 -0.9865 -3.5896 16 6 1.7548 -0.3200 -4.8834 17 6 2.3009 -1.0945 -6.0846 18 1 2.0258 -2.1463 -6.0068 19 6 3.8356 -0.9532 -6.1510 20 6 4.1429 -0.8645 -7.6673 21 6 2.9638 -0.0171 -8.2067 22 6 1.7466 -0.4999 -7.3912 23 9 1.0493 -1.4799 -8.1058 24 9 0.9017 0.5781 -7.1066 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7087 1.1614 3.4844 29 1 1.8626 -2.0133 -3.5564 30 1 3.3162 -0.9863 -3.5567 31 1 2.1186 0.7069 -4.9168 32 1 0.6653 -0.3207 -4.9159 33 1 4.1574 -0.0441 -5.6429 34 1 4.3184 -1.8272 -5.7137 35 1 4.1441 -1.8564 -8.1192 36 1 5.0928 -0.3588 -7.8401 37 1 2.8114 -0.2081 -9.2690 38 1 3.1431 1.0440 -8.0327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884575046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:13 Heat of formation + Delta-G solvation = -231.940906 kcal Electronic energy + Delta-G solvation = -21651.624776 eV Core-core repulsion = 17935.145103 eV Total energy + Delta-G solvation = -3716.479673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.132 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.96593 -48.03568 -41.35879 -38.92881 -37.44256 -35.92712 -33.79193 -32.57275 -28.85209 -28.52999 -27.28593 -25.20060 -23.68070 -22.17379 -21.64190 -21.08452 -18.74303 -18.55128 -18.14216 -17.77299 -17.39189 -17.27333 -16.91996 -16.10438 -15.73064 -15.37491 -15.06677 -14.98039 -14.66769 -14.47084 -14.33764 -14.01707 -13.57864 -13.28626 -13.04798 -12.98465 -12.78327 -12.63489 -12.61618 -12.43140 -12.28479 -12.21062 -12.05575 -11.94793 -11.65762 -11.58993 -11.40881 -11.11755 -11.01930 -10.53641 -8.20442 -6.33997 1.41171 1.43018 1.44229 1.54391 1.83836 2.43317 2.74228 2.94036 3.09682 3.18228 3.32153 3.83028 3.90370 3.99623 4.15359 4.20539 4.21447 4.28487 4.39419 4.47541 4.50658 4.67747 4.78203 4.87864 4.89075 4.90949 5.01301 5.06087 5.07218 5.13212 5.30087 5.38541 5.48970 5.68736 5.87613 6.09598 6.72611 7.03893 7.35031 8.86124 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.040411 B = 0.003294 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.722215 B = 8497.706322 C = 8855.121778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.048 3.952 3 H 0.052 0.948 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.965 3.035 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.275 1.275 12 C 0.473 3.527 13 O -0.542 6.542 14 O -0.364 6.364 15 C 0.060 3.940 16 C -0.101 4.101 17 C -0.127 4.127 18 H 0.105 0.895 19 C -0.124 4.124 20 C -0.115 4.115 21 C -0.156 4.156 22 C 0.275 3.725 23 F -0.209 7.209 24 F -0.208 7.208 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.028 0.972 28 H 0.268 0.732 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 -0.913 -21.698 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 H 0.070 0.930 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.319 3.681 13 O -0.432 6.432 14 O -0.282 6.282 15 C -0.013 4.013 16 C -0.139 4.139 17 C -0.146 4.146 18 H 0.123 0.877 19 C -0.161 4.161 20 C -0.152 4.152 21 C -0.194 4.194 22 C 0.239 3.761 23 F -0.190 7.190 24 F -0.189 7.189 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.501 -1.090 -21.586 22.077 hybrid contribution -0.153 -0.515 0.873 1.025 sum 4.348 -1.605 -20.713 21.225 Atomic orbital electron populations 1.21564 0.94470 0.99868 1.01995 1.18691 0.95865 0.96244 0.86282 0.93042 1.21264 1.32674 1.13328 0.90495 0.92493 1.25656 0.94850 0.95662 1.01619 1.69964 1.36591 1.23457 1.24778 0.85453 0.78405 0.78746 0.78453 1.19728 1.19901 1.20012 1.24815 0.76001 0.82538 0.84778 1.90469 1.37508 1.27744 1.87447 1.86548 1.70236 1.56052 1.15352 1.23122 0.99439 0.95412 0.83370 1.21462 1.01942 1.00384 0.90074 1.22719 0.98884 1.01783 0.91228 0.87722 1.22585 0.91234 1.04136 0.98172 1.22507 0.98122 1.00808 0.93784 1.23408 0.91946 1.03185 1.00880 1.22206 0.85221 0.76152 0.92511 1.92993 1.82095 1.63754 1.80186 1.92983 1.74788 1.56816 1.94358 0.90343 0.93347 0.95284 0.92234 0.91914 0.90721 0.89456 0.90940 0.89944 0.89377 0.89822 0.87930 0.87883 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.81 8.90 71.98 0.64 -5.17 16 2 C 0.05 2.50 2.74 -12.29 -0.03 2.47 16 3 H 0.05 2.77 8.14 -2.39 -0.02 2.75 16 4 C -0.54 -30.88 8.37 25.60 0.21 -30.66 16 5 H 0.06 3.41 6.76 -2.91 -0.02 3.39 16 6 C 0.02 1.22 5.30 84.66 0.45 1.67 16 7 N -0.91 -50.72 11.32 21.45 0.24 -50.48 16 8 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.47 22.53 7.25 71.23 0.52 23.05 16 13 O -0.54 -27.93 15.21 21.97 0.33 -27.59 16 14 O -0.36 -14.43 10.12 -51.47 -0.52 -14.95 16 15 C 0.06 1.82 5.31 71.98 0.38 2.20 16 16 C -0.10 -2.39 4.06 30.59 0.12 -2.26 16 17 C -0.13 -2.33 2.78 -10.07 -0.03 -2.36 16 18 H 0.10 1.89 8.02 -2.39 -0.02 1.87 16 19 C -0.12 -1.71 5.50 31.70 0.17 -1.54 16 20 C -0.11 -1.12 6.91 31.91 0.22 -0.90 16 21 C -0.16 -1.89 6.40 31.67 0.20 -1.68 16 22 C 0.28 5.17 2.53 31.32 0.08 5.25 16 23 F -0.21 -4.58 17.04 44.97 0.77 -3.81 16 24 F -0.21 -4.83 15.46 44.97 0.70 -4.14 16 25 H 0.08 4.05 6.07 -2.39 -0.01 4.04 16 26 H 0.05 2.03 8.11 -2.39 -0.02 2.01 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.06 1.91 8.13 -2.39 -0.02 1.89 16 30 H 0.07 2.13 7.48 -2.39 -0.02 2.11 16 31 H 0.09 1.99 7.97 -2.39 -0.02 1.97 16 32 H 0.07 1.85 7.78 -2.39 -0.02 1.83 16 33 H 0.08 1.16 7.77 -2.39 -0.02 1.14 16 34 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.10 1.03 8.11 -2.38 -0.02 1.01 16 38 H 0.11 1.14 8.12 -2.38 -0.02 1.12 16 Total: -1.00 -64.61 319.42 7.53 -57.08 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.05 Total: 7.93 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 2.94 Total: -9.93 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.24 Total: -50.48 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -0.19 Total: -42.54 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 1.46 Total: -7.95 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -64.61 7.53 -57.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884575046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.865 kcal (2) G-P(sol) polarization free energy of solvation -64.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds