Wall clock time and date at job start Mon Mar 30 2020 20:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.20822 * 120.00115 * 240.00066 * 12 2 1 14 14 O 1.34234 * 119.99749 * 59.99914 * 12 2 1 15 15 C 1.45203 * 117.00028 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47034 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.46970 * 180.02562 * 16 15 14 18 18 H 1.09000 * 110.01654 * 53.60746 * 17 16 15 19 19 C 1.54265 * 110.03314 * 175.00310 * 17 16 15 20 20 C 1.54886 * 104.19806 * 142.89651 * 19 17 16 21 21 C 1.54896 * 102.74789 * 322.05688 * 20 19 17 22 22 C 1.53876 * 110.03359 * 292.16966 * 17 16 15 23 23 F 1.39899 * 110.03202 * 359.97438 * 22 17 16 24 24 F 1.39902 * 110.03040 * 121.42726 * 22 17 16 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47093 * 300.00565 * 15 14 12 30 30 H 1.09002 * 109.46827 * 59.99933 * 15 14 12 31 31 H 1.08991 * 109.47430 * 300.00133 * 16 15 14 32 32 H 1.09002 * 109.46790 * 60.00316 * 16 15 14 33 33 H 1.08998 * 110.48261 * 261.57275 * 19 17 16 34 34 H 1.08995 * 110.48728 * 24.21486 * 19 17 16 35 35 H 1.08996 * 110.75606 * 80.36804 * 20 19 17 36 36 H 1.08997 * 110.75750 * 203.73846 * 20 19 17 37 37 H 1.08992 * 110.48617 * 156.61934 * 21 20 19 38 38 H 1.08996 * 110.48294 * 279.26603 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.7270 -1.6928 -1.1195 14 8 1.7081 -0.2518 -2.4496 15 6 2.2278 -0.9857 -3.5896 16 6 1.7556 -0.3193 -4.8833 17 6 2.3027 -1.0930 -6.0846 18 1 2.0389 -2.1472 -6.0010 19 6 1.7335 -0.5080 -7.3937 20 6 2.9110 -0.6022 -8.3955 21 6 4.1380 -0.2605 -7.5139 22 6 3.8315 -0.9356 -6.1611 23 9 4.2835 -0.1298 -5.1106 24 9 4.4460 -2.1911 -6.1019 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9026 -0.5283 4.4376 29 1 3.3173 -0.9846 -3.5564 30 1 1.8644 -2.0128 -3.5568 31 1 0.6662 -0.3208 -4.9163 32 1 2.1187 0.7080 -4.9163 33 1 0.8885 -1.1022 -7.7413 34 1 1.4371 0.5310 -7.2500 35 1 2.9947 -1.6110 -8.7995 36 1 2.7958 0.1277 -9.1968 37 1 5.0475 -0.6742 -7.9493 38 1 4.2298 0.8184 -7.3897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884575047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:16 Heat of formation + Delta-G solvation = -202.946570 kcal Electronic energy + Delta-G solvation = -22033.840123 eV Core-core repulsion = 18318.617739 eV Total energy + Delta-G solvation = -3715.222384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.132 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.11427 -47.14449 -39.64648 -38.08539 -35.89908 -33.94654 -32.82700 -31.26638 -28.46092 -27.37532 -25.16301 -23.82918 -22.43386 -21.48982 -20.43990 -19.64278 -17.90633 -17.15021 -17.00272 -16.50406 -16.10505 -15.81284 -15.52223 -14.75185 -14.63523 -14.40875 -14.22380 -13.58527 -13.43433 -13.34794 -12.97590 -12.82084 -12.28903 -12.23176 -12.14484 -11.86852 -11.80181 -11.57754 -11.43342 -11.23349 -11.10883 -10.96353 -10.69832 -10.62476 -10.33952 -9.93215 -9.65539 -9.19800 -9.12968 -8.62075 -6.09704 -4.12100 3.20859 3.25674 3.30352 3.33618 3.36547 3.48157 3.62809 3.87825 4.10671 4.35274 4.58649 4.70583 4.77118 4.91729 4.93452 4.98117 5.17288 5.20188 5.27652 5.37054 5.46776 5.52666 5.55975 5.62434 5.73214 5.86253 5.96348 6.07080 6.17854 6.34705 6.45863 6.72865 7.11109 7.19207 7.51513 8.43006 8.79242 9.06179 9.47214 11.02726 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.038662 B = 0.003783 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.048069 B = 7399.135630 C = 7729.636444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.025 3.975 3 H 0.064 0.936 4 C -0.518 4.518 5 H 0.094 0.906 6 C 0.074 3.926 7 N -0.892 5.892 8 Si 0.884 3.116 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.264 1.264 12 C 0.472 3.528 13 O -0.502 6.502 14 O -0.367 6.367 15 C 0.054 3.946 16 C -0.110 4.110 17 C -0.129 4.129 18 H 0.104 0.896 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.162 4.162 22 C 0.279 3.721 23 F -0.190 7.190 24 F -0.197 7.197 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.266 0.734 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 3.407 -25.397 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.005 3.995 3 H 0.081 0.919 4 C -0.555 4.555 5 H 0.112 0.888 6 C -0.128 4.128 7 N -0.529 5.529 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.189 1.189 12 C 0.315 3.685 13 O -0.387 6.387 14 O -0.286 6.286 15 C -0.021 4.021 16 C -0.148 4.148 17 C -0.149 4.149 18 H 0.122 0.878 19 C -0.153 4.153 20 C -0.161 4.161 21 C -0.200 4.200 22 C 0.242 3.758 23 F -0.171 7.171 24 F -0.178 7.178 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.354 3.065 -25.144 25.367 hybrid contribution -0.296 0.496 0.413 0.710 sum -1.650 3.561 -24.731 25.040 Atomic orbital electron populations 1.22085 0.96465 1.01690 0.99974 1.19128 0.93899 0.97656 0.88776 0.91882 1.20933 1.32906 1.14518 0.87161 0.88777 1.24921 0.95685 0.96653 0.95532 1.69872 1.45073 1.40077 0.97927 0.86909 0.80724 0.83678 0.77338 1.20261 1.22099 1.18935 1.24492 0.77128 0.83240 0.83646 1.90548 1.35414 1.26138 1.86636 1.86523 1.70545 1.56066 1.15428 1.23083 1.00021 0.95180 0.83783 1.21522 1.02163 1.00368 0.90726 1.22788 0.91370 1.03464 0.97248 0.87809 1.22411 0.98205 1.02240 0.92479 1.22486 0.93188 1.02790 0.97608 1.23368 1.00977 1.02761 0.92882 1.21890 0.91780 0.75636 0.86457 1.93004 1.90702 1.73199 1.60161 1.93030 1.85097 1.42773 1.96906 0.92419 0.93699 0.93036 0.92358 0.90631 0.92002 0.89630 0.89775 0.89967 0.90054 0.90445 0.89877 0.88952 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.60 37.16 0.32 -2.81 16 2 C 0.02 0.61 2.33 -92.93 -0.22 0.39 16 3 H 0.06 1.51 7.20 -51.93 -0.37 1.13 16 4 C -0.52 -15.20 8.95 -34.44 -0.31 -15.51 16 5 H 0.09 3.12 7.00 -52.48 -0.37 2.75 16 6 C 0.07 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -27.61 13.96 55.43 0.77 -26.83 16 8 Si 0.88 21.41 24.37 -169.99 -4.14 17.27 16 9 H -0.28 -6.43 6.87 56.52 0.39 -6.04 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.26 -6.02 6.53 56.52 0.37 -5.65 16 12 C 0.47 11.18 7.25 36.00 0.26 11.44 16 13 O -0.50 -13.36 15.21 -18.75 -0.29 -13.65 16 14 O -0.37 -7.22 10.12 -39.27 -0.40 -7.62 16 15 C 0.05 0.87 5.18 37.16 0.19 1.07 16 16 C -0.11 -1.26 4.51 -26.73 -0.12 -1.38 16 17 C -0.13 -1.20 2.78 -89.50 -0.25 -1.45 16 18 H 0.10 0.94 8.02 -51.93 -0.42 0.53 16 19 C -0.12 -0.71 6.36 -25.07 -0.16 -0.87 16 20 C -0.12 -0.67 6.91 -24.74 -0.17 -0.84 16 21 C -0.16 -1.18 6.40 -25.07 -0.16 -1.34 16 22 C 0.28 3.01 2.29 -25.61 -0.06 2.96 16 23 F -0.19 -2.60 13.40 2.25 0.03 -2.57 16 24 F -0.20 -2.53 17.04 2.25 0.04 -2.49 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 27 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 28 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.08 1.34 5.95 -51.93 -0.31 1.03 16 30 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.95 7.63 -51.93 -0.40 0.55 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 38 H 0.10 0.65 8.12 -51.93 -0.42 0.23 16 LS Contribution 310.04 15.07 4.67 4.67 Total: -1.00 -33.57 310.04 -5.50 -39.07 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.42 Total: -1.59 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -0.77 Total: -6.26 kcal Atomic # 7 Polarization: -27.61 SS G_CDS: 0.77 Total: -26.83 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.68 Total: -21.27 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.07 Total: -5.06 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.14 Total: 17.27 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.57 -5.50 -39.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884575047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.874 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds