Wall clock time and date at job start Mon Mar 30 2020 20:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.20822 * 120.00115 * 240.00066 * 12 2 1 14 14 O 1.34234 * 119.99749 * 59.99914 * 12 2 1 15 15 C 1.45203 * 117.00028 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47034 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.46970 * 180.02562 * 16 15 14 18 18 H 1.09000 * 110.01654 * 53.60746 * 17 16 15 19 19 C 1.54265 * 110.03314 * 175.00310 * 17 16 15 20 20 C 1.54886 * 104.19806 * 142.89651 * 19 17 16 21 21 C 1.54896 * 102.74789 * 322.05688 * 20 19 17 22 22 C 1.53876 * 110.03359 * 292.16966 * 17 16 15 23 23 F 1.39899 * 110.03202 * 359.97438 * 22 17 16 24 24 F 1.39902 * 110.03040 * 121.42726 * 22 17 16 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47093 * 300.00565 * 15 14 12 30 30 H 1.09002 * 109.46827 * 59.99933 * 15 14 12 31 31 H 1.08991 * 109.47430 * 300.00133 * 16 15 14 32 32 H 1.09002 * 109.46790 * 60.00316 * 16 15 14 33 33 H 1.08998 * 110.48261 * 261.57275 * 19 17 16 34 34 H 1.08995 * 110.48728 * 24.21486 * 19 17 16 35 35 H 1.08996 * 110.75606 * 80.36804 * 20 19 17 36 36 H 1.08997 * 110.75750 * 203.73846 * 20 19 17 37 37 H 1.08992 * 110.48617 * 156.61934 * 21 20 19 38 38 H 1.08996 * 110.48294 * 279.26603 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.7270 -1.6928 -1.1195 14 8 1.7081 -0.2518 -2.4496 15 6 2.2278 -0.9857 -3.5896 16 6 1.7556 -0.3193 -4.8833 17 6 2.3027 -1.0930 -6.0846 18 1 2.0389 -2.1472 -6.0010 19 6 1.7335 -0.5080 -7.3937 20 6 2.9110 -0.6022 -8.3955 21 6 4.1380 -0.2605 -7.5139 22 6 3.8315 -0.9356 -6.1611 23 9 4.2835 -0.1298 -5.1106 24 9 4.4460 -2.1911 -6.1019 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.9026 -0.5283 4.4376 29 1 3.3173 -0.9846 -3.5564 30 1 1.8644 -2.0128 -3.5568 31 1 0.6662 -0.3208 -4.9163 32 1 2.1187 0.7080 -4.9163 33 1 0.8885 -1.1022 -7.7413 34 1 1.4371 0.5310 -7.2500 35 1 2.9947 -1.6110 -8.7995 36 1 2.7958 0.1277 -9.1968 37 1 5.0475 -0.6742 -7.9493 38 1 4.2298 0.8184 -7.3897 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884575047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:15 Heat of formation + Delta-G solvation = -223.934631 kcal Electronic energy + Delta-G solvation = -22034.750233 eV Core-core repulsion = 18318.617739 eV Total energy + Delta-G solvation = -3716.132495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.132 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.03759 -48.10005 -41.43996 -38.81831 -37.55564 -35.98842 -33.89422 -33.26978 -29.16420 -28.27216 -27.19744 -25.47049 -23.67600 -22.14515 -21.59311 -21.08330 -19.03294 -18.76900 -18.24220 -17.91450 -17.62527 -17.45523 -16.85156 -16.28382 -15.70763 -15.42683 -15.00754 -14.96146 -14.76059 -14.50737 -14.34774 -14.09325 -14.05515 -13.52739 -13.20628 -13.04526 -12.86964 -12.82127 -12.62784 -12.43668 -12.25008 -12.15215 -12.01877 -11.72240 -11.58856 -11.51232 -11.32435 -11.23198 -11.07720 -10.78222 -8.33252 -6.44364 1.30930 1.36961 1.40584 1.51895 1.74982 2.31350 2.74271 2.96653 2.99687 3.19322 3.31522 3.77241 3.88244 3.92755 4.13860 4.18543 4.27900 4.29216 4.33595 4.35127 4.45263 4.53315 4.61752 4.71961 4.80457 4.88393 4.91152 4.97414 5.08962 5.11137 5.16914 5.33573 5.35299 5.38895 5.48730 6.19662 6.67193 6.94019 7.20682 8.83849 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.038662 B = 0.003783 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.048069 B = 7399.135630 C = 7729.636444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.019 3.981 3 H 0.080 0.920 4 C -0.537 4.537 5 H 0.033 0.967 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.958 3.042 9 H -0.254 1.254 10 H -0.294 1.294 11 H -0.233 1.233 12 C 0.475 3.525 13 O -0.545 6.545 14 O -0.353 6.353 15 C 0.046 3.954 16 C -0.100 4.100 17 C -0.127 4.127 18 H 0.102 0.898 19 C -0.108 4.108 20 C -0.116 4.116 21 C -0.157 4.157 22 C 0.256 3.744 23 F -0.212 7.212 24 F -0.216 7.216 25 H 0.050 0.950 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.271 0.729 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.154 5.992 -28.100 29.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.000 4.000 3 H 0.097 0.903 4 C -0.575 4.575 5 H 0.051 0.949 6 C -0.183 4.183 7 N -0.585 5.585 8 Si 0.782 3.218 9 H -0.179 1.179 10 H -0.222 1.222 11 H -0.156 1.156 12 C 0.320 3.680 13 O -0.434 6.434 14 O -0.270 6.270 15 C -0.027 4.027 16 C -0.137 4.137 17 C -0.147 4.147 18 H 0.120 0.880 19 C -0.145 4.145 20 C -0.154 4.154 21 C -0.195 4.195 22 C 0.220 3.780 23 F -0.193 7.193 24 F -0.197 7.197 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.898 5.656 -27.899 28.733 hybrid contribution 0.619 -0.430 1.219 1.433 sum -3.279 5.226 -26.680 27.384 Atomic orbital electron populations 1.22000 0.93345 1.02115 1.02082 1.19090 0.96309 0.97489 0.87102 0.90280 1.21029 1.32845 1.13456 0.90123 0.94852 1.25972 0.97156 1.00716 0.94479 1.70048 1.46978 1.42595 0.98850 0.85726 0.79035 0.78777 0.78291 1.17936 1.22166 1.15571 1.24376 0.76257 0.82416 0.84929 1.90539 1.37354 1.28079 1.87443 1.86479 1.69867 1.55795 1.14838 1.23461 0.99085 0.95684 0.84519 1.21547 1.03480 1.00260 0.88415 1.22853 0.90224 1.03434 0.98150 0.87984 1.22445 0.98782 1.02981 0.90327 1.22522 0.91513 1.03749 0.97570 1.23418 1.02281 1.02895 0.90935 1.22660 0.92788 0.75027 0.87518 1.92953 1.91068 1.73752 1.61565 1.92987 1.85558 1.44105 1.97035 0.93038 0.89490 0.92789 0.91975 0.92653 0.92357 0.87395 0.89328 0.88156 0.88870 0.90158 0.87456 0.88682 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 8.60 71.98 0.62 -4.94 16 2 C 0.02 0.94 2.33 -12.29 -0.03 0.91 16 3 H 0.08 3.60 7.20 -2.39 -0.02 3.58 16 4 C -0.54 -32.64 8.95 25.60 0.23 -32.41 16 5 H 0.03 2.37 7.00 -2.91 -0.02 2.35 16 6 C 0.01 0.85 5.45 84.65 0.46 1.31 16 7 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 8 Si 0.96 42.96 24.37 68.60 1.67 44.63 16 9 H -0.25 -10.51 6.87 99.48 0.68 -9.83 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.23 -9.21 6.53 99.48 0.65 -8.56 16 12 C 0.48 22.76 7.25 71.23 0.52 23.28 16 13 O -0.55 -30.50 15.21 21.98 0.33 -30.16 16 14 O -0.35 -13.49 10.12 -51.45 -0.52 -14.01 16 15 C 0.05 1.50 5.18 71.98 0.37 1.87 16 16 C -0.10 -2.06 4.51 30.59 0.14 -1.92 16 17 C -0.13 -2.12 2.78 -10.07 -0.03 -2.14 16 18 H 0.10 1.72 8.02 -2.39 -0.02 1.70 16 19 C -0.11 -0.91 6.36 31.67 0.20 -0.71 16 20 C -0.12 -0.85 6.91 31.89 0.22 -0.63 16 21 C -0.16 -1.99 6.40 31.67 0.20 -1.78 16 22 C 0.26 5.38 2.29 31.32 0.07 5.45 16 23 F -0.21 -5.89 13.40 44.97 0.60 -5.29 16 24 F -0.22 -5.66 17.04 44.97 0.77 -4.89 16 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.09 2.77 8.11 -2.39 -0.02 2.75 16 27 H 0.05 2.14 3.27 -2.38 -0.01 2.13 16 28 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 29 H 0.06 2.03 5.95 -2.39 -0.01 2.02 16 30 H 0.06 1.91 8.13 -2.39 -0.02 1.89 16 31 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 1.78 7.63 -2.39 -0.02 1.76 16 33 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 0.62 7.85 -2.39 -0.02 0.60 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.11 0.34 8.14 -2.39 -0.02 0.33 16 37 H 0.09 1.14 8.11 -2.39 -0.02 1.12 16 38 H 0.11 1.16 8.12 -2.39 -0.02 1.14 16 Total: -1.00 -78.13 310.04 7.11 -71.02 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.98 Total: 10.65 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 2.98 Total: -11.71 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.30 Total: -60.24 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.19 Total: -44.17 kcal Atomic # 9 Polarization: -11.55 SS G_CDS: 1.37 Total: -10.18 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.67 Total: 44.63 kcal Total: -78.13 7.11 -71.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884575047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.910 kcal (2) G-P(sol) polarization free energy of solvation -78.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds