Wall clock time and date at job start Mon Mar 30 2020 20:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.46017 * 2 1 4 4 C 1.54488 * 110.51070 * 237.39384 * 2 1 3 5 5 O 1.44424 * 104.80580 * 217.24079 * 4 2 1 6 6 C 1.44424 * 105.27223 * 40.51313 * 5 4 2 7 7 H 1.09000 * 110.37460 * 78.42909 * 6 5 4 8 8 C 1.50699 * 110.37142 * 200.65752 * 6 5 4 9 9 O 1.21278 * 119.99672 * 3.54631 * 8 6 5 10 10 N 1.34774 * 120.00508 * 183.54802 * 8 6 5 11 11 C 1.39460 * 120.00456 * 175.38871 * 10 8 6 12 12 C 1.38600 * 119.58025 * 186.37859 * 11 10 8 13 13 C 1.40819 * 118.79426 * 179.97438 * 12 11 10 14 14 C 1.41546 * 120.99563 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99948 * 339.21703 * 14 13 12 16 16 C 1.40024 * 120.00075 * 159.21581 * 14 13 12 17 17 N 1.30743 * 119.99862 * 345.60323 * 16 14 13 18 18 Si 1.86794 * 120.00268 * 165.60652 * 16 14 13 19 19 H 1.48500 * 109.47113 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47329 * 119.99937 * 18 16 14 21 21 H 1.48506 * 109.47129 * 240.00157 * 18 16 14 22 22 C 1.41175 * 118.00819 * 0.02562 * 13 12 11 23 23 C 1.37586 * 119.01537 * 359.97438 * 22 13 12 24 24 N 1.32087 * 121.10833 * 359.97438 * 23 22 13 25 25 C 1.54482 * 104.80662 * 319.48694 * 6 5 4 26 26 H 1.08998 * 109.47122 * 181.14803 * 1 2 3 27 27 H 1.08997 * 109.46489 * 301.15508 * 1 2 3 28 28 H 1.09001 * 109.46938 * 61.14634 * 1 2 3 29 29 H 1.09003 * 110.37091 * 98.40465 * 4 2 1 30 30 H 1.09000 * 110.46268 * 336.12492 * 4 2 1 31 31 H 0.97003 * 119.99790 * 355.38507 * 10 8 6 32 32 H 1.07999 * 120.60523 * 359.97438 * 12 11 10 33 33 H 0.97003 * 120.00103 * 180.02562 * 17 16 14 34 34 H 1.07997 * 120.49412 * 179.72332 * 22 13 12 35 35 H 1.07996 * 119.44463 * 179.97438 * 23 22 13 36 36 H 1.08997 * 110.51629 * 142.62349 * 25 6 5 37 37 H 1.09004 * 110.51186 * 265.33816 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7797 -1.2189 5 8 3.2417 -1.4679 -0.7267 6 6 2.8801 -1.9400 0.5894 7 1 2.2638 -2.8361 0.5151 8 6 4.1164 -2.2209 1.4041 9 8 5.2127 -1.9796 0.9451 10 7 4.0038 -2.7401 2.6427 11 6 5.1481 -3.0896 3.3591 12 6 5.0213 -3.7439 4.5743 13 6 6.1878 -4.0895 5.2835 14 6 6.1125 -4.7578 6.5290 15 1 5.2024 -4.7179 7.1091 16 6 7.2180 -5.4708 7.0089 17 7 8.2083 -5.7598 6.2057 18 14 7.2779 -6.0090 8.7966 19 1 6.0436 -5.5609 9.4901 20 1 7.3750 -7.4892 8.8650 21 1 8.4630 -5.4042 9.4563 22 6 7.4345 -3.7485 4.7156 23 6 7.4601 -3.0987 3.5031 24 7 6.3425 -2.7929 2.8689 25 6 2.0743 -0.7810 1.2170 26 1 -0.3633 -1.0274 0.0206 27 1 -0.3632 0.5317 0.8795 28 1 -0.3633 0.4959 -0.9001 29 1 2.3441 -0.0914 -2.0189 30 1 1.3302 -1.4965 -1.5725 31 1 3.1267 -2.8707 3.0360 32 1 4.0457 -3.9843 4.9702 33 1 8.9740 -6.2540 6.5381 34 1 8.3543 -3.9904 5.2272 35 1 8.4100 -2.8341 3.0625 36 1 1.2534 -1.1690 1.8200 37 1 2.7245 -0.1458 1.8187 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889555482.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:26 Heat of formation + Delta-G solvation = -47.158242 kcal Electronic energy + Delta-G solvation = -20707.382063 eV Core-core repulsion = 17449.604355 eV Total energy + Delta-G solvation = -3257.777709 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28591 -38.92581 -37.45099 -34.52676 -33.79970 -33.48478 -30.68815 -30.53203 -28.21376 -26.47611 -26.02061 -24.10997 -21.84791 -21.54451 -20.68742 -19.64451 -17.97681 -17.30747 -16.24025 -15.92636 -15.53586 -15.22050 -14.95277 -14.20566 -14.16703 -14.12091 -13.85766 -13.42461 -13.28284 -12.91298 -12.61962 -12.39909 -12.21673 -11.74700 -11.45909 -11.40099 -11.24697 -11.06174 -10.98422 -10.86794 -10.38583 -10.05223 -9.94158 -9.73562 -9.39714 -9.22854 -8.06474 -7.71422 -7.03421 -6.79014 -4.63898 2.56020 2.73030 3.00657 3.05679 3.12320 3.21617 3.46137 3.82936 4.03925 4.32313 4.51680 4.66811 4.69079 4.86115 4.98188 5.11814 5.22058 5.33004 5.41775 5.52606 5.59621 5.70258 5.76119 5.82931 5.96491 6.00629 6.53245 6.58224 6.66599 6.80135 6.89651 7.14412 7.40661 7.51400 7.80015 7.88915 8.17093 8.46552 8.68181 8.73069 8.85575 9.71262 10.04601 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.040935 B = 0.003485 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.848806 B = 8031.753372 C = 8545.898596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 H 0.086 0.914 4 C 0.045 3.955 5 O -0.343 6.343 6 C 0.059 3.941 7 H 0.091 0.909 8 C 0.501 3.499 9 O -0.456 6.456 10 N -0.658 5.658 11 C 0.349 3.651 12 C -0.305 4.305 13 C 0.142 3.858 14 C -0.451 4.451 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.784 5.784 18 Si 0.915 3.085 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.271 1.271 22 C -0.228 4.228 23 C 0.103 3.897 24 N -0.556 5.556 25 C -0.142 4.142 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.405 0.595 32 H 0.101 0.899 33 H 0.283 0.717 34 H 0.136 0.864 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.429 6.324 -5.934 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.104 0.896 4 C -0.032 4.032 5 O -0.260 6.260 6 C -0.003 4.003 7 H 0.109 0.891 8 C 0.283 3.717 9 O -0.324 6.324 10 N -0.306 5.306 11 C 0.122 3.878 12 C -0.331 4.331 13 C 0.134 3.866 14 C -0.482 4.482 15 H 0.099 0.901 16 C -0.144 4.144 17 N -0.409 5.409 18 Si 0.739 3.261 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.196 1.196 22 C -0.251 4.251 23 C -0.048 4.048 24 N -0.275 5.275 25 C -0.180 4.180 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.080 0.920 31 H 0.240 0.760 32 H 0.119 0.881 33 H 0.094 0.906 34 H 0.153 0.847 35 H 0.141 0.859 36 H 0.105 0.895 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.126 6.805 -7.304 15.707 hybrid contribution -0.669 -0.865 1.886 2.180 sum -12.795 5.940 -5.418 15.112 Atomic orbital electron populations 1.21816 0.93853 1.02202 1.02178 1.22538 0.96549 1.00705 0.94703 0.89603 1.23578 0.88022 0.95079 0.96522 1.89295 1.34555 1.73594 1.28606 1.22898 0.94296 0.98153 0.84942 0.89107 1.20180 0.90373 0.79106 0.82008 1.90818 1.27031 1.45658 1.68874 1.43332 1.08381 1.63151 1.15736 1.17968 0.85928 0.94780 0.89131 1.21152 0.98838 1.15636 0.97510 1.17599 0.90214 0.87298 0.91522 1.19625 0.99142 1.26752 1.02668 0.90060 1.26003 0.94543 0.94055 0.99824 1.69773 1.06944 1.28156 1.36043 0.86157 0.79580 0.78735 0.81665 1.18300 1.19829 1.19556 1.22409 0.99884 1.04742 0.98045 1.21928 0.94345 0.95807 0.92713 1.67217 0.96547 1.27399 1.36365 1.23017 0.99919 0.96744 0.98335 0.92255 0.92109 0.92276 0.88834 0.91991 0.76026 0.88078 0.90614 0.84687 0.85892 0.89454 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.95 37.16 0.33 -0.59 16 2 C -0.13 -1.13 3.71 -89.05 -0.33 -1.46 16 3 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.05 0.46 7.18 37.94 0.27 0.73 16 5 O -0.34 -5.35 10.91 -54.42 -0.59 -5.94 16 6 C 0.06 0.82 3.71 -27.11 -0.10 0.72 16 7 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 8 C 0.50 9.64 7.03 -10.99 -0.08 9.57 16 9 O -0.46 -11.25 14.81 -13.63 -0.20 -11.45 16 10 N -0.66 -12.31 5.39 -11.49 -0.06 -12.37 16 11 C 0.35 8.33 7.41 -154.71 -1.15 7.19 16 12 C -0.31 -7.35 9.73 -38.47 -0.37 -7.72 16 13 C 0.14 3.74 5.64 -106.55 -0.60 3.14 16 14 C -0.45 -11.54 9.14 -37.65 -0.34 -11.88 16 15 H 0.08 1.97 7.89 -52.48 -0.41 1.56 16 16 C 0.08 1.82 5.27 -17.35 -0.09 1.73 16 17 N -0.78 -19.60 10.60 55.55 0.59 -19.02 16 18 Si 0.91 17.86 29.58 -169.99 -5.03 12.83 16 19 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 21 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 22 C -0.23 -5.99 8.82 -38.71 -0.34 -6.33 16 23 C 0.10 2.63 11.15 -17.68 -0.20 2.43 16 24 N -0.56 -14.63 7.86 -12.53 -0.10 -14.72 16 25 C -0.14 -1.50 6.27 -25.16 -0.16 -1.65 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 31 H 0.41 5.70 8.70 -40.82 -0.36 5.35 16 32 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 33 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 34 H 0.14 3.59 5.88 -52.49 -0.31 3.28 16 35 H 0.12 2.84 8.06 -52.49 -0.42 2.42 16 36 H 0.09 0.69 7.74 -51.93 -0.40 0.29 16 37 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 LS Contribution 313.71 15.07 4.73 4.73 Total: -1.00 -33.19 313.71 -8.64 -41.83 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.81 Total: 8.25 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -3.16 Total: -4.13 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.43 Total: -46.11 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.80 Total: -17.40 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.19 -8.64 -41.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889555482.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.329 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds