Wall clock time and date at job start Mon Mar 30 2020 20:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.90868 * 2 1 4 4 C 1.54433 * 110.88697 * 123.59511 * 2 1 3 5 5 O 1.43232 * 107.60727 * 139.48975 * 4 2 1 6 6 C 1.43648 * 109.97211 * 1.74704 * 5 4 2 7 7 H 1.08998 * 110.30845 * 94.48959 * 6 5 4 8 8 C 1.50705 * 110.30806 * 216.65471 * 6 5 4 9 9 O 1.21278 * 119.99693 * 0.71531 * 8 6 5 10 10 N 1.34773 * 120.00067 * 180.71056 * 8 6 5 11 11 C 1.39463 * 120.00331 * 175.35837 * 10 8 6 12 12 C 1.38594 * 119.57910 * 186.35238 * 11 10 8 13 13 C 1.40820 * 118.79489 * 179.97438 * 12 11 10 14 14 C 1.41534 * 120.99640 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99955 * 21.09575 * 14 13 12 16 16 C 1.40036 * 119.99936 * 201.09156 * 14 13 12 17 17 N 1.30743 * 119.99688 * 12.92889 * 16 14 13 18 18 Si 1.86799 * 120.00161 * 192.92908 * 16 14 13 19 19 H 1.48504 * 109.46995 * 59.99691 * 18 16 14 20 20 H 1.48494 * 109.47353 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46932 * 300.00178 * 18 16 14 22 22 C 1.41175 * 118.00302 * 359.97438 * 13 12 11 23 23 C 1.37585 * 119.01986 * 359.97438 * 22 13 12 24 24 N 1.32084 * 121.11051 * 359.74362 * 23 22 13 25 25 C 1.54942 * 105.13315 * 335.57154 * 6 5 4 26 26 H 1.09002 * 109.47206 * 183.58522 * 1 2 3 27 27 H 1.09005 * 109.47173 * 303.58502 * 1 2 3 28 28 H 1.09004 * 109.47283 * 63.58016 * 1 2 3 29 29 H 1.09005 * 109.79134 * 19.98338 * 4 2 1 30 30 H 1.09005 * 109.85303 * 259.02752 * 4 2 1 31 31 H 0.97003 * 119.99547 * 355.36465 * 10 8 6 32 32 H 1.07997 * 120.60312 * 359.95244 * 12 11 10 33 33 H 0.97000 * 119.99666 * 179.97438 * 17 16 14 34 34 H 1.08003 * 120.48822 * 180.02562 * 22 13 12 35 35 H 1.08002 * 119.45270 * 179.97438 * 23 22 13 36 36 H 1.09005 * 111.12050 * 154.36408 * 25 6 5 37 37 H 1.09000 * 111.12809 * 278.47849 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0806 -0.7984 1.2018 5 8 3.2048 -1.5563 0.7401 6 6 3.4463 -1.2793 -0.6486 7 1 4.1939 -0.4930 -0.7531 8 6 3.8968 -2.5288 -1.3606 9 8 3.9935 -3.5727 -0.7508 10 7 4.1921 -2.4862 -2.6749 11 6 4.7011 -3.6175 -3.3123 12 6 5.1254 -3.5282 -4.6286 13 6 5.6370 -4.6805 -5.2560 14 6 6.0840 -4.6420 -6.5983 15 1 6.3597 -3.7000 -7.0489 16 6 6.1687 -5.8254 -7.3423 17 7 5.6057 -6.9185 -6.8979 18 14 7.0860 -5.8421 -8.9694 19 1 8.5026 -5.4585 -8.7429 20 1 7.0294 -7.2053 -9.5556 21 1 6.4547 -4.8755 -9.9035 22 6 5.6918 -5.8749 -4.5053 23 6 5.2479 -5.8658 -3.2031 24 7 4.7798 -4.7617 -2.6494 25 6 2.0826 -0.8028 -1.2091 26 1 -0.3634 -1.0257 0.0643 27 1 -0.3634 0.5685 0.8561 28 1 -0.3634 0.4573 -0.9204 29 1 1.3116 -1.4713 1.5814 30 1 2.3949 -0.1128 1.9889 31 1 4.0507 -1.6687 -3.1774 32 1 5.0645 -2.5921 -5.1637 33 1 5.6640 -7.7381 -7.4135 34 1 6.0772 -6.7822 -4.9466 35 1 5.2862 -6.7757 -2.6226 36 1 2.2184 -0.1597 -2.0787 37 1 1.4380 -1.6492 -1.4464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889555484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:30 Heat of formation + Delta-G solvation = -47.549161 kcal Electronic energy + Delta-G solvation = -20720.801624 eV Core-core repulsion = 17463.006963 eV Total energy + Delta-G solvation = -3257.794660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28274 -38.91765 -37.44015 -34.52567 -33.81657 -33.48237 -30.69106 -30.61004 -28.22484 -26.54599 -26.01781 -23.95859 -21.82500 -21.55802 -20.77262 -19.50732 -17.93551 -17.34765 -16.74237 -15.84691 -15.41878 -15.08220 -14.84968 -14.56576 -14.16610 -13.83219 -13.67350 -13.50316 -13.27436 -12.97303 -12.55759 -12.38257 -12.26478 -11.77762 -11.47608 -11.36421 -11.24828 -11.17162 -11.00673 -10.96378 -10.41444 -10.02088 -9.80679 -9.75952 -9.37573 -9.13923 -8.05792 -7.71195 -7.01435 -6.77737 -4.64233 2.56755 2.75764 3.00106 3.02181 3.14309 3.20003 3.47541 3.82701 3.96004 4.19101 4.48697 4.67119 4.69971 4.91078 4.96768 5.09341 5.18929 5.37185 5.44133 5.57205 5.66481 5.68469 5.71281 5.79125 6.00280 6.01668 6.56807 6.58886 6.77070 6.86991 6.89975 7.15405 7.41156 7.52195 7.81127 7.89788 8.17595 8.47045 8.68976 8.73366 8.86601 9.71706 10.05518 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.039295 B = 0.003494 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.392249 B = 8011.565679 C = 8389.540885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 H 0.088 0.912 4 C 0.052 3.948 5 O -0.353 6.353 6 C 0.066 3.934 7 H 0.095 0.905 8 C 0.495 3.505 9 O -0.457 6.457 10 N -0.658 5.658 11 C 0.349 3.651 12 C -0.305 4.305 13 C 0.142 3.858 14 C -0.451 4.451 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.786 5.786 18 Si 0.916 3.084 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.228 4.228 23 C 0.102 3.898 24 N -0.555 5.555 25 C -0.144 4.144 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.405 0.595 32 H 0.101 0.899 33 H 0.283 0.717 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.091 0.909 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.512 12.589 6.109 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 H 0.106 0.894 4 C -0.025 4.025 5 O -0.271 6.271 6 C 0.004 3.996 7 H 0.112 0.888 8 C 0.278 3.722 9 O -0.325 6.325 10 N -0.306 5.306 11 C 0.121 3.879 12 C -0.331 4.331 13 C 0.134 3.866 14 C -0.482 4.482 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.411 5.411 18 Si 0.740 3.260 19 H -0.187 1.187 20 H -0.202 1.202 21 H -0.189 1.189 22 C -0.251 4.251 23 C -0.049 4.049 24 N -0.275 5.275 25 C -0.182 4.182 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.239 0.761 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.141 0.859 36 H 0.110 0.890 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.665 11.397 7.607 15.237 hybrid contribution 0.439 0.600 -2.065 2.194 sum -6.226 11.997 5.542 14.608 Atomic orbital electron populations 1.21731 0.93478 1.02541 1.02200 1.22730 0.97261 0.99927 0.94533 0.89387 1.23311 0.88789 0.94253 0.96142 1.88546 1.48918 1.67145 1.22452 1.22860 0.98011 0.95400 0.83314 0.88789 1.20409 0.79337 0.90131 0.82329 1.90813 1.46203 1.30637 1.64806 1.43360 1.64351 1.13700 1.09230 1.17980 0.94831 0.86312 0.88735 1.21155 1.16574 1.00613 0.94798 1.17590 0.86297 0.90122 0.92621 1.19566 1.38489 0.94317 0.95868 0.90160 1.26000 0.93332 0.94848 1.00238 1.69744 1.32155 1.01437 1.37800 0.86237 0.80736 0.78318 0.80689 1.18703 1.20172 1.18890 1.22458 1.07507 1.01056 0.94065 1.21938 0.95817 0.94133 0.92970 1.67227 1.24571 0.97941 1.37736 1.23361 0.95328 1.00861 0.98632 0.92047 0.92199 0.91988 0.91017 0.91207 0.76071 0.88096 0.90532 0.84502 0.85898 0.89002 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.17 37.16 0.34 -0.67 16 2 C -0.13 -1.07 3.60 -88.65 -0.32 -1.39 16 3 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 4 C 0.05 0.56 7.41 37.91 0.28 0.84 16 5 O -0.35 -5.51 10.60 -54.58 -0.58 -6.09 16 6 C 0.07 0.91 3.87 -26.86 -0.10 0.80 16 7 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 8 C 0.50 9.50 7.15 -10.98 -0.08 9.42 16 9 O -0.46 -11.24 14.80 -13.79 -0.20 -11.45 16 10 N -0.66 -12.29 5.37 -11.49 -0.06 -12.35 16 11 C 0.35 8.32 7.41 -154.70 -1.15 7.17 16 12 C -0.31 -7.35 9.73 -38.47 -0.37 -7.73 16 13 C 0.14 3.75 5.65 -106.55 -0.60 3.15 16 14 C -0.45 -11.56 9.15 -37.65 -0.34 -11.90 16 15 H 0.08 1.94 7.88 -52.48 -0.41 1.52 16 16 C 0.08 1.81 5.30 -17.34 -0.09 1.72 16 17 N -0.79 -19.63 10.54 55.55 0.59 -19.04 16 18 Si 0.92 17.89 29.58 -169.99 -5.03 12.86 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 20 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 C -0.23 -5.99 8.83 -38.71 -0.34 -6.34 16 23 C 0.10 2.62 11.15 -17.68 -0.20 2.42 16 24 N -0.56 -14.62 7.86 -12.52 -0.10 -14.71 16 25 C -0.14 -1.48 6.00 -24.49 -0.15 -1.63 16 26 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.40 5.68 8.70 -40.82 -0.36 5.33 16 32 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 33 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 34 H 0.14 3.64 5.84 -52.48 -0.31 3.33 16 35 H 0.12 2.84 8.06 -52.49 -0.42 2.42 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 1.03 7.95 -51.93 -0.41 0.62 16 LS Contribution 313.92 15.07 4.73 4.73 Total: -1.00 -33.14 313.92 -8.60 -41.74 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.82 Total: 8.43 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -3.12 Total: -4.13 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.43 Total: -46.11 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.78 Total: -17.53 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.14 -8.60 -41.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889555484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.807 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds