Wall clock time and date at job start Mon Mar 30 2020 20:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.90868 * 2 1 4 4 C 1.54433 * 110.88697 * 123.59511 * 2 1 3 5 5 O 1.43232 * 107.60727 * 139.48975 * 4 2 1 6 6 C 1.43648 * 109.97211 * 1.74704 * 5 4 2 7 7 H 1.08998 * 110.30845 * 94.48959 * 6 5 4 8 8 C 1.50705 * 110.30806 * 216.65471 * 6 5 4 9 9 O 1.21278 * 119.99693 * 0.71531 * 8 6 5 10 10 N 1.34773 * 120.00067 * 180.71056 * 8 6 5 11 11 C 1.39463 * 120.00331 * 175.35837 * 10 8 6 12 12 C 1.38594 * 119.57910 * 186.35238 * 11 10 8 13 13 C 1.40820 * 118.79489 * 179.97438 * 12 11 10 14 14 C 1.41534 * 120.99640 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99955 * 21.09575 * 14 13 12 16 16 C 1.40036 * 119.99936 * 201.09156 * 14 13 12 17 17 N 1.30743 * 119.99688 * 12.92889 * 16 14 13 18 18 Si 1.86799 * 120.00161 * 192.92908 * 16 14 13 19 19 H 1.48504 * 109.46995 * 59.99691 * 18 16 14 20 20 H 1.48494 * 109.47353 * 180.02562 * 18 16 14 21 21 H 1.48508 * 109.46932 * 300.00178 * 18 16 14 22 22 C 1.41175 * 118.00302 * 359.97438 * 13 12 11 23 23 C 1.37585 * 119.01986 * 359.97438 * 22 13 12 24 24 N 1.32084 * 121.11051 * 359.74362 * 23 22 13 25 25 C 1.54942 * 105.13315 * 335.57154 * 6 5 4 26 26 H 1.09002 * 109.47206 * 183.58522 * 1 2 3 27 27 H 1.09005 * 109.47173 * 303.58502 * 1 2 3 28 28 H 1.09004 * 109.47283 * 63.58016 * 1 2 3 29 29 H 1.09005 * 109.79134 * 19.98338 * 4 2 1 30 30 H 1.09005 * 109.85303 * 259.02752 * 4 2 1 31 31 H 0.97003 * 119.99547 * 355.36465 * 10 8 6 32 32 H 1.07997 * 120.60312 * 359.95244 * 12 11 10 33 33 H 0.97000 * 119.99666 * 179.97438 * 17 16 14 34 34 H 1.08003 * 120.48822 * 180.02562 * 22 13 12 35 35 H 1.08002 * 119.45270 * 179.97438 * 23 22 13 36 36 H 1.09005 * 111.12050 * 154.36408 * 25 6 5 37 37 H 1.09000 * 111.12809 * 278.47849 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0806 -0.7984 1.2018 5 8 3.2048 -1.5563 0.7401 6 6 3.4463 -1.2793 -0.6486 7 1 4.1939 -0.4930 -0.7531 8 6 3.8968 -2.5288 -1.3606 9 8 3.9935 -3.5727 -0.7508 10 7 4.1921 -2.4862 -2.6749 11 6 4.7011 -3.6175 -3.3123 12 6 5.1254 -3.5282 -4.6286 13 6 5.6370 -4.6805 -5.2560 14 6 6.0840 -4.6420 -6.5983 15 1 6.3597 -3.7000 -7.0489 16 6 6.1687 -5.8254 -7.3423 17 7 5.6057 -6.9185 -6.8979 18 14 7.0860 -5.8421 -8.9694 19 1 8.5026 -5.4585 -8.7429 20 1 7.0294 -7.2053 -9.5556 21 1 6.4547 -4.8755 -9.9035 22 6 5.6918 -5.8749 -4.5053 23 6 5.2479 -5.8658 -3.2031 24 7 4.7798 -4.7617 -2.6494 25 6 2.0826 -0.8028 -1.2091 26 1 -0.3634 -1.0257 0.0643 27 1 -0.3634 0.5685 0.8561 28 1 -0.3634 0.4573 -0.9204 29 1 1.3116 -1.4713 1.5814 30 1 2.3949 -0.1128 1.9889 31 1 4.0507 -1.6687 -3.1774 32 1 5.0645 -2.5921 -5.1637 33 1 5.6640 -7.7381 -7.4135 34 1 6.0772 -6.7822 -4.9466 35 1 5.2862 -6.7757 -2.6226 36 1 2.2184 -0.1597 -2.0787 37 1 1.4380 -1.6492 -1.4464 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889555484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:29 Heat of formation + Delta-G solvation = -68.699615 kcal Electronic energy + Delta-G solvation = -20721.718776 eV Core-core repulsion = 17463.006963 eV Total energy + Delta-G solvation = -3258.711813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.60356 -40.39512 -39.08462 -36.30255 -35.39836 -34.52108 -32.60948 -31.83030 -29.87936 -27.94460 -27.26232 -25.19471 -23.70038 -23.13843 -21.67046 -20.98817 -19.72006 -18.55618 -18.01507 -17.52361 -16.86683 -16.45422 -16.17312 -15.98748 -15.90144 -15.57183 -14.84028 -14.82519 -14.42912 -14.20762 -14.04124 -13.90046 -13.32712 -13.16243 -12.87725 -12.85667 -12.76169 -12.16428 -12.07485 -11.94793 -11.83462 -11.68965 -11.52427 -11.18619 -10.99556 -10.52926 -10.01681 -9.59955 -8.88125 -8.61996 -6.59986 0.73735 0.96036 1.41172 1.53650 1.56448 1.78261 1.90259 2.19477 2.80242 2.93877 3.31110 3.57085 3.74734 3.81007 3.97079 4.09061 4.19451 4.29087 4.53890 4.69146 4.72733 4.77020 4.80548 4.83495 4.91704 4.93889 5.02441 5.03634 5.20864 5.25560 5.39841 5.47544 5.62103 5.86826 5.95935 6.13983 6.43333 6.60641 6.78319 6.82078 7.27827 7.83958 8.24785 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.039295 B = 0.003494 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.392249 B = 8011.565679 C = 8389.540885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 H 0.116 0.884 4 C 0.041 3.959 5 O -0.393 6.393 6 C 0.073 3.927 7 H 0.129 0.871 8 C 0.490 3.510 9 O -0.521 6.521 10 N -0.643 5.643 11 C 0.344 3.656 12 C -0.312 4.312 13 C 0.113 3.887 14 C -0.476 4.476 15 H 0.090 0.910 16 C 0.033 3.967 17 N -0.814 5.814 18 Si 0.994 3.006 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.255 1.255 22 C -0.248 4.248 23 C 0.093 3.907 24 N -0.585 5.585 25 C -0.140 4.140 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.428 0.572 32 H 0.128 0.872 33 H 0.292 0.708 34 H 0.128 0.872 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 15.353 4.914 17.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 H 0.135 0.865 4 C -0.035 4.035 5 O -0.312 6.312 6 C 0.012 3.988 7 H 0.147 0.853 8 C 0.276 3.724 9 O -0.392 6.392 10 N -0.293 5.293 11 C 0.116 3.884 12 C -0.338 4.338 13 C 0.105 3.895 14 C -0.507 4.507 15 H 0.108 0.892 16 C -0.184 4.184 17 N -0.440 5.440 18 Si 0.814 3.186 19 H -0.183 1.183 20 H -0.193 1.193 21 H -0.179 1.179 22 C -0.272 4.272 23 C -0.057 4.057 24 N -0.306 5.306 25 C -0.178 4.178 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.267 0.733 32 H 0.146 0.854 33 H 0.103 0.897 34 H 0.145 0.855 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.010 14.223 6.415 17.105 hybrid contribution 0.489 -0.270 -1.636 1.729 sum -6.521 13.953 4.779 16.126 Atomic orbital electron populations 1.21738 0.92527 1.02046 1.03548 1.22742 0.97936 1.00467 0.91964 0.86545 1.23585 0.87658 0.94490 0.97733 1.88511 1.50701 1.68736 1.23262 1.22965 1.00696 0.92582 0.82563 0.85337 1.21557 0.77498 0.91352 0.81996 1.90779 1.48897 1.33523 1.66041 1.43299 1.63295 1.13128 1.09551 1.18310 0.94049 0.86983 0.89049 1.21374 1.16232 1.01093 0.95053 1.18019 0.86995 0.90914 0.93559 1.19928 1.39199 0.95597 0.95948 0.89156 1.26969 0.93489 0.93903 1.03995 1.69805 1.32469 1.02237 1.39441 0.85069 0.79087 0.78788 0.75696 1.18319 1.19306 1.17854 1.22426 1.09051 1.01162 0.94519 1.22174 0.95686 0.94836 0.93049 1.67323 1.25729 0.98914 1.38606 1.23429 0.92738 1.00948 1.00680 0.93561 0.90672 0.90794 0.91722 0.89120 0.73318 0.85439 0.89656 0.85478 0.84719 0.85500 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.17 71.98 0.66 -0.96 16 2 C -0.11 -1.53 3.60 -9.52 -0.03 -1.57 16 3 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 4 C 0.04 0.81 7.41 72.47 0.54 1.35 16 5 O -0.39 -12.00 10.60 -130.48 -1.38 -13.38 16 6 C 0.07 1.88 3.87 30.51 0.12 1.99 16 7 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 8 C 0.49 18.76 7.15 87.66 0.63 19.38 16 9 O -0.52 -26.48 14.80 15.48 0.23 -26.25 16 10 N -0.64 -23.51 5.37 -308.66 -1.66 -25.16 16 11 C 0.34 16.58 7.41 132.75 0.98 17.56 16 12 C -0.31 -15.01 9.73 22.99 0.22 -14.79 16 13 C 0.11 6.09 5.65 -21.11 -0.12 5.97 16 14 C -0.48 -24.39 9.15 23.52 0.22 -24.18 16 15 H 0.09 4.29 7.88 -2.91 -0.02 4.27 16 16 C 0.03 1.60 5.30 85.29 0.45 2.05 16 17 N -0.81 -41.04 10.54 21.84 0.23 -40.81 16 18 Si 0.99 35.73 29.58 68.60 2.03 37.76 16 19 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 20 H -0.27 -9.22 7.11 99.48 0.71 -8.51 16 21 H -0.25 -8.72 7.11 99.48 0.71 -8.02 16 22 C -0.25 -13.55 8.83 22.84 0.20 -13.35 16 23 C 0.09 4.98 11.15 84.50 0.94 5.92 16 24 N -0.59 -31.80 7.86 -193.54 -1.52 -33.32 16 25 C -0.14 -2.51 6.00 32.05 0.19 -2.31 16 26 H 0.05 0.67 8.06 -2.39 -0.02 0.65 16 27 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 1.32 7.75 -2.38 -0.02 1.31 16 30 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.43 11.06 8.70 -92.71 -0.81 10.25 16 32 H 0.13 5.27 8.06 -2.91 -0.02 5.25 16 33 H 0.29 13.25 8.29 -92.71 -0.77 12.48 16 34 H 0.13 7.06 5.84 -2.91 -0.02 7.05 16 35 H 0.14 6.56 8.06 -2.91 -0.02 6.53 16 36 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.07 1.47 7.95 -2.39 -0.02 1.46 16 Total: -1.00 -75.53 313.92 3.21 -72.32 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.29 Total: 31.77 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 5.00 Total: -2.92 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -2.95 Total: -99.29 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -1.15 Total: -39.63 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.76 kcal Total: -75.53 3.21 -72.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889555484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.623 kcal (2) G-P(sol) polarization free energy of solvation -75.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds