Wall clock time and date at job start Mon Mar 30 2020 20:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 111.02179 * 2 1 4 4 C 1.54942 * 111.12727 * 235.77822 * 2 1 3 5 5 O 1.43643 * 105.13897 * 205.63465 * 4 2 1 6 6 C 1.43239 * 109.97042 * 24.43193 * 5 4 2 7 7 H 1.09000 * 109.83045 * 238.68281 * 6 5 4 8 8 C 1.50694 * 109.83427 * 117.79872 * 6 5 4 9 9 O 1.21274 * 120.00291 * 356.45499 * 8 6 5 10 10 N 1.34784 * 120.00029 * 176.45252 * 8 6 5 11 11 C 1.39471 * 119.99697 * 184.85349 * 10 8 6 12 12 C 1.38596 * 119.57430 * 185.90346 * 11 10 8 13 13 C 1.40811 * 118.79303 * 180.02562 * 12 11 10 14 14 C 1.41544 * 120.99758 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00200 * 326.50295 * 14 13 12 16 16 C 1.40036 * 119.99621 * 146.49580 * 14 13 12 17 17 N 1.30740 * 119.99537 * 168.43786 * 16 14 13 18 18 Si 1.86797 * 120.00201 * 348.43716 * 16 14 13 19 19 H 1.48499 * 109.46799 * 92.73861 * 18 16 14 20 20 H 1.48505 * 109.47086 * 212.73321 * 18 16 14 21 21 H 1.48495 * 109.47230 * 332.73470 * 18 16 14 22 22 C 1.41180 * 118.00732 * 0.02562 * 13 12 11 23 23 C 1.37583 * 119.01581 * 359.97438 * 22 13 12 24 24 N 1.32084 * 121.10754 * 0.25833 * 23 22 13 25 25 C 1.54385 * 107.58746 * 358.28492 * 6 5 4 26 26 H 1.09004 * 109.47184 * 182.76774 * 1 2 3 27 27 H 1.09000 * 109.47287 * 302.76590 * 1 2 3 28 28 H 1.09006 * 109.46906 * 62.76765 * 1 2 3 29 29 H 1.09004 * 110.31284 * 86.71893 * 4 2 1 30 30 H 1.09003 * 110.39345 * 324.59516 * 4 2 1 31 31 H 0.96996 * 119.99870 * 4.85799 * 10 8 6 32 32 H 1.08000 * 120.60710 * 0.04442 * 12 11 10 33 33 H 0.97001 * 120.00220 * 180.02562 * 17 16 14 34 34 H 1.08002 * 120.49174 * 179.97438 * 22 13 12 35 35 H 1.08000 * 119.44575 * 179.97438 * 23 22 13 36 36 H 1.08997 * 110.84970 * 96.83963 * 25 6 5 37 37 H 1.09007 * 110.84902 * 220.45727 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9210 1.0174 0.0000 4 6 2.0885 -0.8128 -1.1950 5 8 3.3898 -1.2522 -0.7744 6 6 3.4510 -1.3011 0.6558 7 1 4.2476 -0.6492 1.0143 8 6 3.7056 -2.7157 1.1086 9 8 3.7603 -3.6126 0.2941 10 7 3.8726 -2.9842 2.4188 11 6 4.2083 -4.2742 2.8290 12 6 4.2575 -4.5708 4.1820 13 6 4.5989 -5.8783 4.5777 14 6 4.6626 -6.2324 5.9467 15 1 4.9859 -5.5062 6.6778 16 6 4.3062 -7.5242 6.3530 17 7 4.5753 -7.9248 7.5681 18 14 3.4464 -8.6751 5.1590 19 1 4.4577 -9.5059 4.4573 20 1 2.5137 -9.5568 5.9060 21 1 2.6845 -7.8777 4.1647 22 6 4.8756 -6.8256 3.5681 23 6 4.8011 -6.4375 2.2503 24 7 4.4815 -5.1990 1.9207 25 6 2.0897 -0.8147 1.1979 26 1 -0.3634 -1.0265 0.0496 27 1 -0.3634 0.5562 0.8641 28 1 -0.3633 0.4703 -0.9138 29 1 2.1703 -0.1793 -2.0783 30 1 1.4486 -1.6703 -1.4033 31 1 3.7592 -2.2802 3.0764 32 1 4.0378 -3.8129 4.9194 33 1 4.3288 -8.8197 7.8496 34 1 5.1419 -7.8399 3.8265 35 1 5.0118 -7.1563 1.4723 36 1 1.4405 -1.6590 1.4300 37 1 2.2255 -0.1768 2.0713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889555485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:32 Heat of formation + Delta-G solvation = -47.271701 kcal Electronic energy + Delta-G solvation = -20902.458796 eV Core-core repulsion = 17644.676167 eV Total energy + Delta-G solvation = -3257.782629 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45538 -39.10782 -37.63424 -34.55383 -33.83683 -33.59015 -31.34843 -30.74870 -28.64711 -26.62730 -26.01278 -24.08364 -22.03385 -21.67675 -20.91450 -19.56291 -18.14466 -17.42179 -16.79167 -16.06277 -15.77152 -15.45022 -14.73566 -14.54930 -14.33931 -14.11271 -13.83794 -13.60840 -13.23462 -13.12628 -12.86335 -12.60663 -12.49608 -11.85690 -11.60191 -11.43004 -11.28443 -11.19797 -10.96694 -10.82570 -10.72686 -10.16910 -9.96234 -9.76851 -9.38609 -9.20067 -8.26572 -7.90950 -7.27675 -7.02273 -4.74321 2.23968 2.58559 3.04847 3.10917 3.17559 3.23328 3.30567 3.79901 3.92309 4.12704 4.44814 4.55727 4.62463 4.82277 4.90420 5.08507 5.14464 5.30780 5.35336 5.41918 5.55106 5.58167 5.62762 5.74981 5.76021 5.96362 6.26869 6.31209 6.42217 6.50750 6.74878 7.02974 7.06314 7.12764 7.58323 7.73648 7.95694 8.21208 8.40312 8.62209 8.68910 9.39830 9.99452 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.032882 B = 0.003950 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.323581 B = 7086.652578 C = 7298.119462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 H 0.090 0.910 4 C 0.051 3.949 5 O -0.351 6.351 6 C 0.067 3.933 7 H 0.106 0.894 8 C 0.485 3.515 9 O -0.459 6.459 10 N -0.661 5.661 11 C 0.359 3.641 12 C -0.288 4.288 13 C 0.130 3.870 14 C -0.444 4.444 15 H 0.094 0.906 16 C 0.087 3.913 17 N -0.807 5.807 18 Si 0.914 3.086 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.246 1.246 22 C -0.296 4.296 23 C 0.137 3.863 24 N -0.554 5.554 25 C -0.145 4.145 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.408 0.592 32 H 0.111 0.889 33 H 0.287 0.713 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.838 13.806 -8.928 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 H 0.108 0.892 4 C -0.025 4.025 5 O -0.268 6.268 6 C 0.005 3.995 7 H 0.123 0.877 8 C 0.269 3.731 9 O -0.327 6.327 10 N -0.309 5.309 11 C 0.134 3.866 12 C -0.313 4.313 13 C 0.122 3.878 14 C -0.474 4.474 15 H 0.112 0.888 16 C -0.133 4.133 17 N -0.432 5.432 18 Si 0.740 3.260 19 H -0.193 1.193 20 H -0.218 1.218 21 H -0.169 1.169 22 C -0.319 4.319 23 C -0.017 4.017 24 N -0.273 5.273 25 C -0.183 4.183 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.242 0.758 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.148 0.852 36 H 0.103 0.897 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.661 13.225 -10.419 18.106 hybrid contribution -0.433 -0.457 1.181 1.338 sum -7.094 12.768 -9.238 17.282 Atomic orbital electron populations 1.21681 0.93445 1.02580 1.02236 1.22867 0.97084 0.99947 0.94564 0.89180 1.23546 0.84483 0.97443 0.97033 1.88524 1.31769 1.88316 1.18229 1.22657 0.99406 0.94033 0.83399 0.87689 1.21015 0.78389 0.91066 0.82680 1.90797 1.43778 1.46389 1.51740 1.43476 1.69424 1.10024 1.07969 1.18104 0.94567 0.84582 0.89384 1.21265 1.17833 0.99698 0.92532 1.17703 0.86190 0.90415 0.93537 1.19440 1.38669 0.97407 0.91899 0.88793 1.26125 0.93363 0.97980 0.95841 1.69600 1.35335 1.19568 1.18674 0.86273 0.79897 0.79449 0.80342 1.19300 1.21760 1.16885 1.21982 1.14744 1.01014 0.94193 1.21858 0.94018 0.91605 0.94205 1.67292 1.22248 1.01738 1.36022 1.23236 0.95047 1.00809 0.99180 0.92097 0.91978 0.92098 0.89388 0.91827 0.75755 0.87142 0.90220 0.87238 0.85231 0.89663 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.31 37.16 0.35 -0.62 16 2 C -0.13 -1.02 3.69 -88.37 -0.33 -1.34 16 3 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.05 0.54 7.26 38.18 0.28 0.82 16 5 O -0.35 -5.13 10.56 -54.88 -0.58 -5.71 16 6 C 0.07 0.85 3.95 -27.16 -0.11 0.75 16 7 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 8 C 0.49 8.67 6.98 -10.99 -0.08 8.60 16 9 O -0.46 -10.60 14.82 -14.09 -0.21 -10.81 16 10 N -0.66 -11.46 5.37 -11.49 -0.06 -11.52 16 11 C 0.36 8.01 7.40 -154.70 -1.14 6.87 16 12 C -0.29 -6.54 9.73 -38.48 -0.37 -6.91 16 13 C 0.13 3.26 5.09 -106.55 -0.54 2.71 16 14 C -0.44 -11.66 9.66 -37.65 -0.36 -12.02 16 15 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 16 C 0.09 2.22 5.48 -17.34 -0.10 2.12 16 17 N -0.81 -20.97 13.92 55.55 0.77 -20.20 16 18 Si 0.91 20.59 24.48 -169.99 -4.16 16.42 16 19 H -0.27 -5.81 6.72 56.52 0.38 -5.43 16 20 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.25 -5.79 6.70 56.52 0.38 -5.41 16 22 C -0.30 -7.17 7.11 -38.70 -0.28 -7.45 16 23 C 0.14 3.21 11.15 -17.68 -0.20 3.02 16 24 N -0.55 -13.58 7.90 -12.52 -0.10 -13.68 16 25 C -0.14 -1.35 6.00 -24.78 -0.15 -1.50 16 26 H 0.06 0.47 8.10 -51.93 -0.42 0.04 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.72 8.03 -51.93 -0.42 0.30 16 31 H 0.41 5.22 8.70 -40.82 -0.36 4.87 16 32 H 0.11 2.24 8.06 -52.49 -0.42 1.81 16 33 H 0.29 6.76 8.29 -40.82 -0.34 6.42 16 34 H 0.11 2.58 4.79 -52.49 -0.25 2.33 16 35 H 0.13 2.67 8.06 -52.49 -0.42 2.25 16 36 H 0.08 0.91 7.70 -51.93 -0.40 0.51 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -33.06 309.02 -7.54 -40.60 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.83 Total: 5.19 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -3.03 Total: -4.96 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.61 Total: -45.40 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.79 Total: -16.52 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.16 Total: 16.42 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.06 -7.54 -40.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889555485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.674 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds