Wall clock time and date at job start Mon Mar 30 2020 20:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 111.02179 * 2 1 4 4 C 1.54942 * 111.12727 * 235.77822 * 2 1 3 5 5 O 1.43643 * 105.13897 * 205.63465 * 4 2 1 6 6 C 1.43239 * 109.97042 * 24.43193 * 5 4 2 7 7 H 1.09000 * 109.83045 * 238.68281 * 6 5 4 8 8 C 1.50694 * 109.83427 * 117.79872 * 6 5 4 9 9 O 1.21274 * 120.00291 * 356.45499 * 8 6 5 10 10 N 1.34784 * 120.00029 * 176.45252 * 8 6 5 11 11 C 1.39471 * 119.99697 * 184.85349 * 10 8 6 12 12 C 1.38596 * 119.57430 * 185.90346 * 11 10 8 13 13 C 1.40811 * 118.79303 * 180.02562 * 12 11 10 14 14 C 1.41544 * 120.99758 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00200 * 326.50295 * 14 13 12 16 16 C 1.40036 * 119.99621 * 146.49580 * 14 13 12 17 17 N 1.30740 * 119.99537 * 168.43786 * 16 14 13 18 18 Si 1.86797 * 120.00201 * 348.43716 * 16 14 13 19 19 H 1.48499 * 109.46799 * 92.73861 * 18 16 14 20 20 H 1.48505 * 109.47086 * 212.73321 * 18 16 14 21 21 H 1.48495 * 109.47230 * 332.73470 * 18 16 14 22 22 C 1.41180 * 118.00732 * 0.02562 * 13 12 11 23 23 C 1.37583 * 119.01581 * 359.97438 * 22 13 12 24 24 N 1.32084 * 121.10754 * 0.25833 * 23 22 13 25 25 C 1.54385 * 107.58746 * 358.28492 * 6 5 4 26 26 H 1.09004 * 109.47184 * 182.76774 * 1 2 3 27 27 H 1.09000 * 109.47287 * 302.76590 * 1 2 3 28 28 H 1.09006 * 109.46906 * 62.76765 * 1 2 3 29 29 H 1.09004 * 110.31284 * 86.71893 * 4 2 1 30 30 H 1.09003 * 110.39345 * 324.59516 * 4 2 1 31 31 H 0.96996 * 119.99870 * 4.85799 * 10 8 6 32 32 H 1.08000 * 120.60710 * 0.04442 * 12 11 10 33 33 H 0.97001 * 120.00220 * 180.02562 * 17 16 14 34 34 H 1.08002 * 120.49174 * 179.97438 * 22 13 12 35 35 H 1.08000 * 119.44575 * 179.97438 * 23 22 13 36 36 H 1.08997 * 110.84970 * 96.83963 * 25 6 5 37 37 H 1.09007 * 110.84902 * 220.45727 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9210 1.0174 0.0000 4 6 2.0885 -0.8128 -1.1950 5 8 3.3898 -1.2522 -0.7744 6 6 3.4510 -1.3011 0.6558 7 1 4.2476 -0.6492 1.0143 8 6 3.7056 -2.7157 1.1086 9 8 3.7603 -3.6126 0.2941 10 7 3.8726 -2.9842 2.4188 11 6 4.2083 -4.2742 2.8290 12 6 4.2575 -4.5708 4.1820 13 6 4.5989 -5.8783 4.5777 14 6 4.6626 -6.2324 5.9467 15 1 4.9859 -5.5062 6.6778 16 6 4.3062 -7.5242 6.3530 17 7 4.5753 -7.9248 7.5681 18 14 3.4464 -8.6751 5.1590 19 1 4.4577 -9.5059 4.4573 20 1 2.5137 -9.5568 5.9060 21 1 2.6845 -7.8777 4.1647 22 6 4.8756 -6.8256 3.5681 23 6 4.8011 -6.4375 2.2503 24 7 4.4815 -5.1990 1.9207 25 6 2.0897 -0.8147 1.1979 26 1 -0.3634 -1.0265 0.0496 27 1 -0.3634 0.5562 0.8641 28 1 -0.3633 0.4703 -0.9138 29 1 2.1703 -0.1793 -2.0783 30 1 1.4486 -1.6703 -1.4033 31 1 3.7592 -2.2802 3.0764 32 1 4.0378 -3.8129 4.9194 33 1 4.3288 -8.8197 7.8496 34 1 5.1419 -7.8399 3.8265 35 1 5.0118 -7.1563 1.4723 36 1 1.4405 -1.6590 1.4300 37 1 2.2255 -0.1768 2.0713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889555485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:31 Heat of formation + Delta-G solvation = -69.423152 kcal Electronic energy + Delta-G solvation = -20903.419355 eV Core-core repulsion = 17644.676167 eV Total energy + Delta-G solvation = -3258.743188 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.72703 -40.55196 -39.13464 -36.24433 -35.49226 -34.52782 -33.23946 -31.94443 -30.15722 -27.93820 -27.31400 -25.28302 -23.81476 -23.19792 -21.69964 -21.01716 -19.89923 -18.55566 -18.14541 -17.65901 -17.18245 -16.76410 -16.18928 -16.07203 -15.97123 -15.64919 -14.94976 -14.80952 -14.65972 -14.55618 -14.21824 -13.88767 -13.45197 -13.24415 -13.01786 -12.72660 -12.70151 -12.60637 -12.21482 -11.97249 -11.82077 -11.63131 -11.48797 -11.24910 -11.21844 -10.55187 -10.17971 -9.68362 -9.02034 -8.95067 -6.73719 0.47852 0.71823 1.26728 1.38388 1.45694 1.69424 1.88712 2.09037 2.66544 2.86972 3.30729 3.45995 3.54051 3.76269 3.93734 4.07471 4.13224 4.34933 4.43846 4.53777 4.59364 4.63592 4.66170 4.72352 4.76071 4.82052 4.89795 5.03142 5.18113 5.22158 5.23024 5.38675 5.39256 5.70589 5.82866 6.05075 6.20317 6.43504 6.49244 6.69533 7.19124 7.64495 8.11592 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.032882 B = 0.003950 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.323581 B = 7086.652578 C = 7298.119462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 H 0.115 0.885 4 C 0.040 3.960 5 O -0.383 6.383 6 C 0.073 3.927 7 H 0.138 0.862 8 C 0.481 3.519 9 O -0.519 6.519 10 N -0.646 5.646 11 C 0.357 3.643 12 C -0.289 4.289 13 C 0.115 3.885 14 C -0.471 4.471 15 H 0.071 0.929 16 C 0.057 3.943 17 N -0.838 5.838 18 Si 0.963 3.037 19 H -0.254 1.254 20 H -0.275 1.275 21 H -0.263 1.263 22 C -0.306 4.306 23 C 0.131 3.869 24 N -0.575 5.575 25 C -0.141 4.141 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.046 0.954 31 H 0.430 0.570 32 H 0.133 0.867 33 H 0.297 0.703 34 H 0.114 0.886 35 H 0.155 0.845 36 H 0.068 0.932 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.769 15.712 -9.623 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 H 0.133 0.867 4 C -0.035 4.035 5 O -0.301 6.301 6 C 0.012 3.988 7 H 0.155 0.845 8 C 0.267 3.733 9 O -0.390 6.390 10 N -0.296 5.296 11 C 0.129 3.871 12 C -0.315 4.315 13 C 0.107 3.893 14 C -0.502 4.502 15 H 0.089 0.911 16 C -0.160 4.160 17 N -0.465 5.465 18 Si 0.787 3.213 19 H -0.179 1.179 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.329 4.329 23 C -0.022 4.022 24 N -0.295 5.295 25 C -0.178 4.178 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.064 0.936 31 H 0.269 0.731 32 H 0.150 0.850 33 H 0.108 0.892 34 H 0.132 0.868 35 H 0.172 0.828 36 H 0.087 0.913 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.598 15.179 -11.079 20.270 hybrid contribution -0.141 -0.938 1.297 1.606 sum -7.739 14.241 -9.782 18.931 Atomic orbital electron populations 1.21685 0.92519 1.02057 1.03551 1.22870 0.97715 1.00354 0.92211 0.86733 1.23785 0.83057 0.97596 0.99106 1.88500 1.33794 1.88562 1.19284 1.22829 1.02461 0.90453 0.83084 0.84458 1.22148 0.76338 0.92903 0.81878 1.90766 1.46416 1.48702 1.53132 1.43456 1.68396 1.08806 1.08917 1.18383 0.93521 0.86043 0.89114 1.21485 1.17084 0.99498 0.93383 1.17897 0.86392 0.91784 0.93249 1.19433 1.40774 0.97791 0.92154 0.91098 1.26687 0.93522 0.98804 0.97006 1.69611 1.36488 1.20632 1.19725 0.85533 0.79298 0.78059 0.78445 1.17881 1.20115 1.18773 1.22080 1.15188 1.01223 0.94415 1.22278 0.93336 0.91980 0.94649 1.67417 1.22552 1.02457 1.37035 1.23315 0.92552 1.00968 1.01001 0.93583 0.90545 0.90923 0.87386 0.93588 0.73091 0.84952 0.89187 0.86811 0.82779 0.91347 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.31 71.98 0.67 -0.84 16 2 C -0.11 -1.44 3.69 -9.34 -0.03 -1.48 16 3 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 4 C 0.04 0.79 7.26 72.65 0.53 1.32 16 5 O -0.38 -10.68 10.56 -130.19 -1.38 -12.06 16 6 C 0.07 1.69 3.95 30.32 0.12 1.81 16 7 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 8 C 0.48 16.67 6.98 87.65 0.61 17.28 16 9 O -0.52 -24.06 14.82 15.77 0.23 -23.83 16 10 N -0.65 -21.35 5.37 -308.66 -1.66 -23.00 16 11 C 0.36 15.61 7.40 132.75 0.98 16.59 16 12 C -0.29 -12.97 9.73 22.98 0.22 -12.75 16 13 C 0.12 5.79 5.09 -21.11 -0.11 5.68 16 14 C -0.47 -25.21 9.66 23.52 0.23 -24.98 16 15 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16 16 C 0.06 2.92 5.48 85.29 0.47 3.39 16 17 N -0.84 -43.94 13.92 21.84 0.30 -43.64 16 18 Si 0.96 42.07 24.48 68.60 1.68 43.75 16 19 H -0.25 -10.46 6.72 99.48 0.67 -9.79 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.26 -12.20 6.70 99.48 0.67 -11.53 16 22 C -0.31 -14.73 7.11 22.84 0.16 -14.57 16 23 C 0.13 6.11 11.15 84.50 0.94 7.05 16 24 N -0.58 -28.00 7.90 -193.54 -1.53 -29.53 16 25 C -0.14 -2.17 6.00 31.86 0.19 -1.98 16 26 H 0.05 0.63 8.10 -2.38 -0.02 0.61 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.03 8.03 -2.39 -0.02 1.01 16 31 H 0.43 9.86 8.70 -92.71 -0.81 9.06 16 32 H 0.13 5.21 8.06 -2.91 -0.02 5.18 16 33 H 0.30 13.98 8.29 -92.71 -0.77 13.21 16 34 H 0.11 5.29 4.79 -2.91 -0.01 5.28 16 35 H 0.16 6.20 8.06 -2.91 -0.02 6.17 16 36 H 0.07 1.31 7.70 -2.39 -0.02 1.29 16 37 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -73.55 309.02 2.85 -70.70 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.21 Total: 21.09 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 4.98 Total: -3.48 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -2.88 Total: -96.17 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.14 Total: -35.89 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.68 Total: 43.75 kcal Total: -73.55 2.85 -70.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889555485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.279 kcal (2) G-P(sol) polarization free energy of solvation -73.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds