Wall clock time and date at job start Mon Mar 30 2020 20:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47514 * 2 1 4 4 C 1.46901 * 110.99766 * 299.51302 * 3 2 1 5 5 C 1.50698 * 109.47075 * 293.95443 * 4 3 2 6 6 H 1.07994 * 120.00387 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99420 * 180.02562 * 5 4 3 8 8 N 1.31502 * 120.00214 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99391 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47133 * 90.00016 * 9 7 5 11 11 H 1.48500 * 109.46556 * 209.99670 * 9 7 5 12 12 H 1.48496 * 109.46997 * 330.00034 * 9 7 5 13 13 C 1.46902 * 111.00096 * 63.46919 * 3 2 1 14 14 C 1.50698 * 109.47224 * 71.56327 * 13 3 2 15 15 C 1.38043 * 120.05666 * 254.94880 * 14 13 3 16 16 C 1.38613 * 120.46625 * 179.72975 * 15 14 13 17 17 C 1.37796 * 120.38920 * 0.56285 * 16 15 14 18 18 C 1.39506 * 119.73616 * 359.71556 * 17 16 15 19 19 N 1.36153 * 133.71291 * 180.02562 * 18 17 16 20 20 C 1.30617 * 108.71583 * 179.97438 * 19 18 17 21 21 O 1.35188 * 124.92652 * 180.02562 * 20 19 18 22 22 O 1.34386 * 110.14661 * 359.97438 * 20 19 18 23 23 C 1.35262 * 108.19266 * 359.97438 * 22 20 19 24 24 H 1.09002 * 109.46723 * 60.19519 * 1 2 3 25 25 H 1.08992 * 109.47748 * 180.19869 * 1 2 3 26 26 H 1.09002 * 109.47406 * 300.20529 * 1 2 3 27 27 H 1.09000 * 109.47161 * 239.99579 * 2 1 3 28 28 H 1.09006 * 109.46453 * 120.00188 * 2 1 3 29 29 H 1.08997 * 109.47029 * 53.95968 * 4 3 2 30 30 H 1.09000 * 109.46817 * 173.95484 * 4 3 2 31 31 H 0.97002 * 119.99870 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.47266 * 191.56387 * 13 3 2 33 33 H 1.08997 * 109.46704 * 311.56857 * 13 3 2 34 34 H 1.08006 * 119.76558 * 0.02562 * 15 14 13 35 35 H 1.07999 * 119.80482 * 180.29589 * 16 15 14 36 36 H 1.08001 * 120.13228 * 179.68670 * 17 16 15 37 37 H 0.96698 * 113.99946 * 359.96217 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5583 2.1065 -1.1935 5 6 2.1902 1.5027 -2.4211 6 1 2.8673 0.6669 -2.3245 7 6 1.9048 2.0181 -3.6677 8 7 1.0807 3.0361 -3.7854 9 14 2.6887 1.2701 -5.1894 10 1 1.8190 0.1859 -5.7122 11 1 2.8515 2.3185 -6.2284 12 1 4.0187 0.7113 -4.8372 13 6 1.6177 2.0855 1.2270 14 6 2.4095 1.5515 2.3928 15 6 1.8114 0.7062 3.3056 16 6 2.5332 0.2056 4.3778 17 6 3.8546 0.5551 4.5525 18 6 4.4699 1.4131 3.6406 19 7 5.7239 1.9330 3.5365 20 6 5.7755 2.6936 2.4758 21 8 6.8692 3.3722 2.0625 22 8 4.5839 2.7029 1.8545 23 6 3.7376 1.9115 2.5524 24 1 -0.3633 0.5108 -0.8918 25 1 -0.3634 -1.0275 0.0036 26 1 -0.3634 0.5170 0.8881 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8901 29 1 0.4736 2.0294 -1.2679 30 1 1.8435 3.1557 -1.1167 31 1 0.8797 3.3985 -4.6625 32 1 1.8098 3.1526 1.1157 33 1 0.5546 1.9243 1.4056 34 1 0.7749 0.4291 3.1808 35 1 2.0559 -0.4587 5.0829 36 1 4.4117 0.1666 5.3922 37 1 7.6437 3.2523 2.6288 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891579279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:33 Heat of formation + Delta-G solvation = -16.216589 kcal Electronic energy + Delta-G solvation = -21392.568617 eV Core-core repulsion = 18136.132639 eV Total energy + Delta-G solvation = -3256.435978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.26632 -39.97580 -39.02174 -38.22703 -35.62767 -34.71625 -32.59709 -30.98432 -30.22530 -28.91240 -26.33874 -25.04396 -24.57585 -23.93771 -22.37209 -20.79773 -19.97783 -19.26433 -18.41490 -18.23240 -17.87289 -16.88743 -16.63034 -16.13570 -15.97306 -15.40479 -15.11301 -14.75737 -14.61045 -14.30478 -14.08295 -13.54906 -13.44777 -13.14123 -13.13845 -12.86524 -12.71618 -12.65129 -12.48975 -12.36068 -11.91832 -11.89036 -11.56225 -11.50344 -11.22810 -10.61726 -9.64761 -9.21489 -8.90377 -8.20939 -6.30093 -0.22463 0.27593 0.73367 1.36348 1.37673 1.39138 1.50476 2.38303 2.55051 2.66573 3.11281 3.38188 3.44717 3.81523 3.97601 4.09496 4.26889 4.29909 4.39152 4.43209 4.58916 4.59083 4.71173 4.76151 4.94470 4.99815 5.07182 5.19098 5.21571 5.36206 5.41465 5.47363 5.51568 5.65059 5.67173 6.04525 6.06349 6.37798 6.63397 6.66021 6.85510 7.38784 8.89727 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.017828 B = 0.005542 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.222402 B = 5051.062941 C = 6146.046815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.062 3.938 3 N -0.544 5.544 4 C 0.208 3.792 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.270 1.270 13 C 0.088 3.912 14 C -0.048 4.048 15 C -0.093 4.093 16 C -0.092 4.092 17 C -0.079 4.079 18 C 0.025 3.975 19 N -0.532 5.532 20 C 0.440 3.560 21 O -0.412 6.412 22 O -0.222 6.222 23 C -0.003 4.003 24 H 0.032 0.968 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.079 0.921 29 H -0.014 1.014 30 H -0.010 1.010 31 H 0.264 0.736 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.164 0.836 35 H 0.182 0.818 36 H 0.160 0.840 37 H 0.459 0.541 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.959 -5.960 18.565 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.065 4.065 3 N -0.267 5.267 4 C 0.082 3.918 5 C -0.557 4.557 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.574 5.574 9 Si 0.790 3.210 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.195 1.195 13 C -0.039 4.039 14 C -0.049 4.049 15 C -0.112 4.112 16 C -0.110 4.110 17 C -0.098 4.098 18 C -0.086 4.086 19 N -0.284 5.284 20 C 0.191 3.809 21 O -0.217 6.217 22 O -0.116 6.116 23 C -0.052 4.052 24 H 0.051 0.949 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.003 0.997 30 H 0.008 0.992 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.181 0.819 35 H 0.199 0.801 36 H 0.177 0.823 37 H 0.323 0.677 Dipole moment (debyes) X Y Z Total from point charges 4.635 -5.650 18.250 19.659 hybrid contribution -0.348 0.591 -1.616 1.755 sum 4.287 -5.059 16.635 17.908 Atomic orbital electron populations 1.22262 0.97577 1.02598 1.01193 1.21968 0.93556 0.89645 1.01373 1.62197 1.60185 1.03066 1.01278 1.19391 0.93017 0.92062 0.87327 1.21402 1.26646 1.16124 0.91536 0.92621 1.25843 0.95818 0.95470 1.02310 1.70072 1.36857 1.25683 1.24762 0.85451 0.78918 0.78172 0.78501 1.19404 1.20680 1.19515 1.20993 0.97263 0.97173 0.88516 1.18891 0.88563 0.99686 0.97782 1.21283 1.01579 0.95003 0.93287 1.21453 0.92561 0.99276 0.97735 1.20624 0.95275 0.95864 0.98047 1.19948 0.89034 1.02003 0.97584 1.71128 1.21178 1.17434 1.18691 1.22600 0.83193 0.90131 0.85007 1.84698 1.18600 1.64021 1.54357 1.84445 1.19590 1.58597 1.49015 1.20150 0.93401 0.97737 0.93894 0.94905 0.90464 0.91504 0.92751 0.90269 0.99653 0.99223 0.92723 0.93055 0.91679 0.81883 0.80082 0.82288 0.67743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.93 9.27 71.98 0.67 -5.26 16 2 C 0.06 2.38 5.73 86.30 0.49 2.87 16 3 N -0.54 -24.33 4.65 -905.38 -4.21 -28.54 16 4 C 0.21 11.38 4.48 85.56 0.38 11.76 16 5 C -0.52 -30.39 8.51 25.60 0.22 -30.17 16 6 H 0.06 3.26 7.11 -2.91 -0.02 3.23 16 7 C 0.00 0.20 5.46 84.66 0.46 0.67 16 8 N -0.93 -57.24 13.28 21.45 0.28 -56.96 16 9 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 13 C 0.09 3.29 5.00 85.56 0.43 3.72 16 14 C -0.05 -1.51 4.65 -19.84 -0.09 -1.60 16 15 C -0.09 -2.03 9.08 22.31 0.20 -1.83 16 16 C -0.09 -1.56 10.02 22.25 0.22 -1.33 16 17 C -0.08 -1.69 10.10 22.47 0.23 -1.46 16 18 C 0.03 0.76 7.23 39.28 0.28 1.04 16 19 N -0.53 -15.95 11.38 -422.73 -4.81 -20.76 16 20 C 0.44 13.86 9.54 130.42 1.24 15.10 16 21 O -0.41 -9.59 13.62 -62.41 -0.85 -10.44 16 22 O -0.22 -8.76 10.78 9.25 0.10 -8.66 16 23 C 0.00 -0.10 7.11 22.84 0.16 0.06 16 24 H 0.03 1.34 6.30 -2.39 -0.02 1.32 16 25 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.07 1.91 6.25 -2.39 -0.01 1.89 16 27 H 0.05 2.33 6.84 -2.39 -0.02 2.31 16 28 H 0.08 2.58 6.92 -2.38 -0.02 2.56 16 29 H -0.01 -0.80 6.02 -2.39 -0.01 -0.81 16 30 H -0.01 -0.63 7.87 -2.39 -0.02 -0.65 16 31 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.05 2.13 7.82 -2.39 -0.02 2.11 16 33 H 0.07 2.13 5.71 -2.39 -0.01 2.11 16 34 H 0.16 2.65 7.99 -2.91 -0.02 2.62 16 35 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 36 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.46 4.55 9.06 -74.06 -0.67 3.88 16 Total: -1.00 -76.54 311.22 -2.11 -78.66 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.44 Total: 5.46 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.90 Total: -6.43 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -8.73 Total: -106.25 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.75 Total: -19.10 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -76.54 -2.11 -78.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891579279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.439 kcal (2) G-P(sol) polarization free energy of solvation -76.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds