Wall clock time and date at job start Mon Mar 30 2020 20:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99594 * 2 1 4 4 C 1.50700 * 109.47768 * 66.04299 * 3 2 1 5 5 H 1.08004 * 119.99460 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00340 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00060 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99703 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.47194 * 90.00327 * 8 6 4 10 10 H 1.48505 * 109.46791 * 210.00038 * 8 6 4 11 11 H 1.48499 * 109.47587 * 329.99670 * 8 6 4 12 12 C 1.46893 * 111.00124 * 236.04460 * 2 1 3 13 13 C 1.53045 * 109.45989 * 303.95171 * 12 2 1 14 14 C 1.53185 * 109.31342 * 178.61540 * 13 12 2 15 15 N 1.46926 * 108.77524 * 54.63463 * 14 13 12 16 16 S 1.65607 * 120.62900 * 126.11598 * 15 14 13 17 17 C 1.81404 * 104.44904 * 90.00281 * 16 15 14 18 18 O 1.42102 * 104.27874 * 206.07153 * 16 15 14 19 19 O 1.42094 * 104.27685 * 333.92979 * 16 15 14 20 20 C 1.46924 * 118.73991 * 306.39104 * 15 14 13 21 21 C 1.53038 * 109.45862 * 183.88806 * 12 2 1 22 22 H 1.09004 * 109.47090 * 183.95606 * 1 2 3 23 23 H 1.08998 * 109.47037 * 303.95891 * 1 2 3 24 24 H 1.09000 * 109.46990 * 63.96054 * 1 2 3 25 25 H 1.09009 * 109.46949 * 186.04778 * 3 2 1 26 26 H 1.09006 * 109.47465 * 306.03731 * 3 2 1 27 27 H 0.97000 * 119.99840 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.45097 * 63.91594 * 12 2 1 29 29 H 1.08998 * 109.49685 * 58.66065 * 13 12 2 30 30 H 1.09001 * 109.52360 * 298.58137 * 13 12 2 31 31 H 1.09001 * 109.59106 * 294.85078 * 14 13 12 32 32 H 1.08998 * 109.70436 * 174.49150 * 14 13 12 33 33 H 1.08995 * 109.47054 * 59.99835 * 17 16 15 34 34 H 1.09000 * 109.46981 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.46488 * 299.99868 * 17 16 15 36 36 H 1.09004 * 109.58777 * 173.39544 * 20 15 14 37 37 H 1.08994 * 109.58607 * 293.81880 * 20 15 14 38 38 H 1.09005 * 109.49668 * 301.33376 * 21 12 2 39 39 H 1.09001 * 109.50363 * 61.43031 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0473 1.2984 5 1 1.0745 1.5114 2.0487 6 6 2.0275 3.3493 1.5287 7 7 1.7150 3.9389 2.6621 8 14 3.0007 4.2759 0.2311 9 1 2.0641 4.9804 -0.6808 10 1 3.8879 5.2668 0.8916 11 1 3.8239 3.3171 -0.5489 12 6 1.9955 -0.7660 -1.1375 13 6 1.4258 -2.1860 -1.1033 14 6 1.9496 -2.9712 -2.3099 15 7 3.4176 -2.9098 -2.3130 16 16 4.3199 -4.2972 -2.3728 17 6 4.5600 -4.6049 -4.1444 18 8 5.5504 -3.9418 -1.7573 19 8 3.4760 -5.2889 -1.8043 20 6 4.0698 -1.5945 -2.2557 21 6 3.5222 -0.8248 -1.0497 22 1 -0.3633 -1.0252 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4511 -0.9234 25 1 3.0797 1.3445 -0.1083 26 1 1.5611 1.9274 -0.8310 27 1 1.9902 4.8548 2.8243 28 1 1.7037 -0.2800 -2.0685 29 1 0.3374 -2.1424 -1.1422 30 1 1.7374 -2.6815 -0.1838 31 1 1.5636 -2.5298 -3.2287 32 1 1.6275 -4.0102 -2.2402 33 1 5.0826 -3.7598 -4.5924 34 1 5.1509 -5.5109 -4.2790 35 1 3.5901 -4.7291 -4.6262 36 1 5.1466 -1.7250 -2.1477 37 1 3.8566 -1.0409 -3.1701 38 1 3.9259 0.1877 -1.0505 39 1 3.8146 -1.3327 -0.1306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121396656.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:19 Heat of formation + Delta-G solvation = -55.150350 kcal Electronic energy + Delta-G solvation = -20578.443103 eV Core-core repulsion = 17455.762781 eV Total energy + Delta-G solvation = -3122.680321 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.97326 -37.31056 -36.15076 -35.90308 -32.60495 -31.17816 -30.85443 -29.71129 -27.83338 -25.49153 -23.52156 -22.58749 -20.90043 -19.65992 -18.81488 -17.89540 -16.80100 -16.49641 -16.21016 -15.06601 -14.73419 -14.58401 -14.27268 -14.24922 -13.77997 -13.46786 -13.41035 -13.06995 -12.86578 -12.53217 -12.43857 -12.23696 -12.17905 -11.99628 -11.47624 -11.36323 -11.23663 -11.14222 -10.85671 -10.68902 -10.60517 -10.25400 -9.81324 -9.76345 -9.22818 -9.08616 -8.56191 -7.35857 -6.04303 -4.01052 0.05202 2.45275 3.27304 3.35334 3.36035 3.71280 3.91506 4.36543 4.41874 4.58404 4.64258 4.71998 4.97524 5.19577 5.24991 5.31981 5.32544 5.41927 5.50298 5.66022 5.71200 5.75782 5.89224 6.05226 6.12640 6.23779 6.33428 6.43874 6.56475 6.64256 6.74891 6.87697 7.00509 7.62955 7.92712 8.07902 8.67786 9.04927 9.57507 11.09023 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.031493 B = 0.004531 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.863921 B = 6178.099412 C = 6605.927797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.528 5.528 3 C 0.158 3.842 4 C -0.508 4.508 5 H 0.080 0.920 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.875 3.125 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.086 3.914 13 C -0.126 4.126 14 C 0.121 3.879 15 N -0.997 5.997 16 S 2.610 3.390 17 C -0.676 4.676 18 O -0.953 6.953 19 O -0.956 6.956 20 C 0.120 3.880 21 C -0.127 4.127 22 H 0.052 0.948 23 H 0.079 0.921 24 H 0.009 0.991 25 H 0.034 0.966 26 H -0.019 1.019 27 H 0.263 0.737 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 -15.463 -16.566 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.252 5.252 3 C 0.032 3.968 4 C -0.546 4.546 5 H 0.098 0.902 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.703 3.297 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.024 4.024 13 C -0.165 4.165 14 C -0.004 4.004 15 N -0.836 5.836 16 S 2.703 3.297 17 C -0.825 4.825 18 O -0.944 6.944 19 O -0.946 6.946 20 C -0.005 4.005 21 C -0.166 4.166 22 H 0.070 0.930 23 H 0.098 0.902 24 H 0.028 0.972 25 H 0.052 0.948 26 H -0.001 1.001 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.857 -16.016 -15.317 22.494 hybrid contribution 0.116 1.306 -2.125 2.497 sum 3.973 -14.710 -17.442 23.160 Atomic orbital electron populations 1.22291 0.88356 1.00057 1.00703 1.61972 1.07196 1.16241 1.39745 1.20264 0.95580 0.84063 0.96865 1.21051 1.35434 0.97154 1.00969 0.90168 1.24903 0.95808 0.97381 0.95297 1.69895 1.46956 1.13246 1.23910 0.86863 0.80614 0.80063 0.82172 1.20461 1.21172 1.19196 1.21499 0.94463 0.93529 0.92860 1.21975 1.00447 0.95612 0.98448 1.21484 0.78135 1.01786 0.99035 1.57681 1.15772 1.20921 1.89240 1.04886 0.73964 0.73431 0.77448 1.30619 1.11538 1.11541 1.28771 1.93610 1.45384 1.82370 1.73010 1.93596 1.67004 1.59109 1.74888 1.21537 0.97488 0.82344 0.99164 1.21983 0.95461 1.00973 0.98204 0.92970 0.90221 0.97226 0.94827 1.00127 0.92695 0.95250 0.90633 0.90411 0.91743 0.88964 0.85506 0.85768 0.85565 0.88826 0.91678 0.90047 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 8.92 60.07 0.54 1.18 16 2 N -0.53 -10.79 4.62 -236.28 -1.09 -11.88 16 3 C 0.16 3.77 3.60 -4.98 -0.02 3.75 16 4 C -0.51 -14.35 9.01 -34.44 -0.31 -14.66 16 5 H 0.08 2.48 7.37 -52.48 -0.39 2.09 16 6 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 7 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 8 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 12 C 0.09 1.38 1.91 -67.67 -0.13 1.25 16 13 C -0.13 -1.68 5.04 -26.61 -0.13 -1.81 16 14 C 0.12 1.24 6.43 -3.71 -0.02 1.22 16 15 N -1.00 -10.59 3.22 -113.53 -0.37 -10.95 16 16 S 2.61 26.26 6.10 -107.50 -0.66 25.60 16 17 C -0.68 -3.80 10.99 101.05 1.11 -2.69 16 18 O -0.95 -12.96 16.58 -57.54 -0.95 -13.92 16 19 O -0.96 -12.54 16.59 -57.54 -0.95 -13.49 16 20 C 0.12 1.37 6.43 -3.71 -0.02 1.35 16 21 C -0.13 -1.96 5.19 -26.61 -0.14 -2.10 16 22 H 0.05 0.82 6.20 -51.93 -0.32 0.50 16 23 H 0.08 1.68 6.76 -51.93 -0.35 1.33 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 25 H 0.03 0.80 4.86 -51.92 -0.25 0.55 16 26 H -0.02 -0.45 7.55 -51.93 -0.39 -0.84 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.93 6.27 -51.93 -0.33 0.61 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.86 6.86 -51.93 -0.36 0.50 16 33 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.12 0.55 8.14 -51.92 -0.42 0.13 16 35 H 0.13 0.54 8.14 -51.92 -0.42 0.11 16 36 H 0.09 1.01 6.86 -51.93 -0.36 0.65 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.34 6.13 -51.93 -0.32 1.03 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -35.15 312.74 -8.46 -43.61 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.03 Total: -2.85 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 0.77 Total: -10.66 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.68 Total: -49.66 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -1.91 Total: -27.41 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: 26.26 SS G_CDS: -0.66 Total: 25.60 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.15 -8.46 -43.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121396656.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.541 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds