Wall clock time and date at job start Mon Mar 30 2020 20:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99993 * 2 1 4 4 C 1.53784 * 113.61452 * 149.99519 * 3 2 1 5 5 C 1.53785 * 87.07845 * 89.19858 * 4 3 2 6 6 C 1.50701 * 113.61302 * 139.97821 * 5 4 3 7 7 O 1.21279 * 119.99975 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00038 * 180.02562 * 6 5 4 9 9 C 1.39475 * 119.99880 * 185.07522 * 8 6 5 10 10 C 1.38602 * 119.57794 * 185.35750 * 9 8 6 11 11 C 1.40803 * 118.79391 * 180.02562 * 10 9 8 12 12 C 1.41541 * 120.99520 * 180.25177 * 11 10 9 13 13 H 1.08000 * 120.00085 * 153.55198 * 12 11 10 14 14 C 1.40033 * 119.99812 * 333.54550 * 12 11 10 15 15 N 1.30740 * 120.00301 * 350.24746 * 14 12 11 16 16 Si 1.86801 * 119.99747 * 170.24419 * 14 12 11 17 17 H 1.48498 * 109.47316 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46970 * 120.00632 * 16 14 12 19 19 H 1.48506 * 109.47233 * 240.00103 * 16 14 12 20 20 C 1.41174 * 118.00817 * 359.97208 * 11 10 9 21 21 C 1.37586 * 119.01516 * 0.02562 * 20 11 10 22 22 N 1.32081 * 121.11268 * 0.02562 * 21 20 11 23 23 C 1.53777 * 113.69164 * 247.53228 * 3 2 1 24 24 H 1.08994 * 109.47013 * 60.00367 * 1 2 3 25 25 H 1.09001 * 109.46887 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47397 * 299.99865 * 1 2 3 27 27 H 1.09003 * 112.84771 * 18.80547 * 3 2 1 28 28 H 1.09005 * 113.61632 * 334.65510 * 4 3 2 29 29 H 1.08994 * 113.61618 * 203.74645 * 4 3 2 30 30 H 1.08996 * 113.61820 * 270.79597 * 5 4 3 31 31 H 0.97003 * 120.00063 * 5.07676 * 8 6 5 32 32 H 1.08001 * 120.59965 * 0.02562 * 10 9 8 33 33 H 0.96996 * 119.99962 * 179.97438 * 15 14 12 34 34 H 1.08005 * 120.49200 * 179.97438 * 20 11 10 35 35 H 1.08003 * 119.44262 * 179.97438 * 21 20 11 36 36 H 1.08997 * 113.61708 * 156.32444 * 23 3 2 37 37 H 1.09009 * 113.61308 * 25.42162 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3755 1.3719 0.7046 5 6 4.0063 1.0352 -0.6569 6 6 5.2712 1.8029 -0.9425 7 8 5.6957 2.5964 -0.1295 8 7 5.9308 1.6077 -2.1016 9 6 7.1557 2.2374 -2.3215 10 6 7.7728 2.1209 -3.5570 11 6 9.0092 2.7629 -3.7608 12 6 9.6776 2.6792 -5.0057 13 1 10.3538 3.4646 -5.3095 14 6 9.4620 1.5780 -5.8434 15 7 8.7992 0.5409 -5.4024 16 14 10.1215 1.5907 -7.5910 17 1 10.8310 2.8707 -7.8431 18 1 11.0649 0.4583 -7.7724 19 1 8.9934 1.4530 -8.5469 20 6 9.5594 3.4977 -2.6882 21 6 8.8725 3.5562 -1.4976 22 7 7.7148 2.9385 -1.3465 23 6 2.7531 1.6511 -1.3013 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.3137 2.0789 0.3238 28 1 3.5175 0.5949 1.4558 29 1 3.6304 2.3667 1.0698 30 1 4.1107 -0.0347 -0.8371 31 1 5.5536 1.0292 -2.7828 32 1 7.3135 1.5481 -4.3491 33 1 8.6496 -0.2217 -5.9828 34 1 10.5060 4.0056 -2.8004 35 1 9.2873 4.1160 -0.6723 36 1 2.8379 2.7222 -1.4844 37 1 2.3927 1.0993 -2.1696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599685607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:59 Heat of formation + Delta-G solvation = -21.772271 kcal Electronic energy + Delta-G solvation = -20634.837528 eV Core-core repulsion = 17378.160638 eV Total energy + Delta-G solvation = -3256.676891 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28177 -38.86972 -37.58884 -35.55075 -34.26563 -33.67416 -30.52617 -28.87547 -27.13959 -26.00959 -25.77075 -25.56582 -22.03207 -21.74120 -20.15657 -19.19874 -17.63905 -17.49478 -16.20852 -15.72246 -15.65867 -15.34435 -15.14068 -14.57807 -14.18893 -14.10928 -13.74198 -13.49243 -12.88528 -12.61522 -12.53483 -12.45627 -12.10236 -11.86922 -11.45170 -11.41802 -11.18578 -10.91082 -10.77865 -10.44742 -10.26362 -10.10898 -9.71469 -9.70696 -9.39421 -9.20406 -7.97523 -7.71415 -7.02079 -6.73751 -4.62524 2.56058 2.78601 3.02040 3.07452 3.19695 3.45375 3.47883 3.74058 3.85866 4.44299 4.57258 4.68463 4.76657 4.86403 5.10362 5.15513 5.27647 5.38642 5.42083 5.68529 5.69296 5.74372 5.93982 6.01870 6.06731 6.20755 6.60277 6.68095 6.81171 6.96820 7.03541 7.13957 7.40161 7.48783 7.80616 7.97554 8.24398 8.44525 8.71629 8.76295 8.93995 9.69921 10.10204 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.003880 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.295203 B = 7214.811704 C = 8170.268579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.369 6.369 3 C 0.061 3.939 4 C -0.115 4.115 5 C -0.130 4.130 6 C 0.508 3.492 7 O -0.485 6.485 8 N -0.658 5.658 9 C 0.335 3.665 10 C -0.239 4.239 11 C 0.141 3.859 12 C -0.454 4.454 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.795 5.795 16 Si 0.915 3.085 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.272 1.272 20 C -0.283 4.283 21 C 0.117 3.883 22 N -0.554 5.554 23 C -0.142 4.142 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.408 0.592 32 H 0.133 0.867 33 H 0.280 0.720 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.511 -2.196 3.822 14.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.003 3.997 4 C -0.153 4.153 5 C -0.151 4.151 6 C 0.292 3.708 7 O -0.356 6.356 8 N -0.303 5.303 9 C 0.110 3.890 10 C -0.265 4.265 11 C 0.133 3.867 12 C -0.486 4.486 13 H 0.100 0.900 14 C -0.143 4.143 15 N -0.422 5.422 16 Si 0.739 3.261 17 H -0.184 1.184 18 H -0.199 1.199 19 H -0.197 1.197 20 C -0.307 4.307 21 C -0.038 4.038 22 N -0.273 5.273 23 C -0.180 4.180 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.243 0.757 32 H 0.151 0.849 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.112 0.888 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.660 -1.988 5.211 14.754 hybrid contribution 0.453 -0.406 -2.095 2.182 sum -13.207 -2.394 3.116 13.779 Atomic orbital electron populations 1.22806 0.81056 1.02710 0.99999 1.87890 1.19601 1.26682 1.94571 1.23100 0.94727 0.85013 0.96845 1.23093 0.92375 1.03993 0.95790 1.22727 0.92286 1.01044 0.99080 1.20510 0.84956 0.83401 0.81907 1.90746 1.66103 1.33463 1.45239 1.43499 1.19906 1.48064 1.18825 1.18258 0.85863 0.93760 0.91134 1.21686 0.98116 1.10800 0.95852 1.17598 0.89435 0.87606 0.92065 1.19614 1.23135 1.05277 1.00553 0.90038 1.25952 0.93533 0.94471 1.00355 1.69747 1.31529 1.04278 1.36609 0.86156 0.79300 0.79432 0.81221 1.18373 1.19885 1.19699 1.21928 1.02232 1.11291 0.95224 1.21757 0.90342 0.96040 0.95623 1.67190 1.13166 1.14946 1.31978 1.23379 0.94742 1.01792 0.98088 0.93965 0.89640 0.94000 0.90495 0.90240 0.87486 0.86832 0.75718 0.84947 0.90869 0.87976 0.85908 0.88770 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.33 16 2 O -0.37 -4.13 10.64 -35.23 -0.37 -4.50 16 3 C 0.06 0.66 4.37 -25.92 -0.11 0.55 16 4 C -0.11 -1.46 7.24 -25.91 -0.19 -1.65 16 5 C -0.13 -1.81 4.09 -90.95 -0.37 -2.19 16 6 C 0.51 9.69 7.31 -10.99 -0.08 9.61 16 7 O -0.48 -11.18 14.19 5.56 0.08 -11.10 16 8 N -0.66 -13.19 5.39 -11.49 -0.06 -13.25 16 9 C 0.33 8.26 7.40 -154.70 -1.15 7.11 16 10 C -0.24 -6.14 8.61 -38.48 -0.33 -6.47 16 11 C 0.14 3.75 5.60 -106.55 -0.60 3.15 16 12 C -0.45 -11.75 9.14 -37.65 -0.34 -12.09 16 13 H 0.08 2.02 7.87 -52.49 -0.41 1.61 16 14 C 0.07 1.81 5.31 -17.34 -0.09 1.72 16 15 N -0.80 -19.66 10.70 55.55 0.59 -19.07 16 16 Si 0.91 18.03 29.57 -169.99 -5.03 13.00 16 17 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 20 C -0.28 -7.03 9.90 -38.71 -0.38 -7.41 16 21 C 0.12 2.85 11.15 -17.68 -0.20 2.65 16 22 N -0.55 -14.37 7.89 -12.52 -0.10 -14.47 16 23 C -0.14 -1.65 7.46 -25.92 -0.19 -1.84 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.11 1.46 7.43 -51.93 -0.39 1.08 16 30 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.41 6.85 8.70 -40.82 -0.36 6.50 16 32 H 0.13 3.37 6.11 -52.49 -0.32 3.05 16 33 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 34 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 35 H 0.12 2.61 8.06 -52.48 -0.42 2.19 16 36 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 37 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 LS Contribution 317.45 15.07 4.78 4.78 Total: -1.00 -31.61 317.45 -7.86 -39.48 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -4.82 Total: 10.64 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.94 Total: -5.51 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.43 Total: -46.79 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.30 Total: -15.61 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.61 -7.86 -39.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599685607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.707 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds