Wall clock time and date at job start Mon Mar 30 2020 20:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00297 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99449 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46592 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46526 * 180.02562 * 15 14 13 17 17 H 1.08994 * 110.01934 * 306.38958 * 16 15 14 18 18 C 1.54276 * 110.02736 * 184.99981 * 16 15 14 19 19 C 1.54890 * 104.19496 * 217.10702 * 18 16 15 20 20 C 1.54886 * 102.74917 * 37.94243 * 19 18 16 21 21 C 1.53876 * 110.03326 * 67.84004 * 16 15 14 22 22 F 1.39898 * 110.02752 * 238.56206 * 21 16 15 23 23 F 1.39897 * 110.03298 * 359.97438 * 21 16 15 24 24 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 28 28 H 0.96992 * 119.99896 * 0.02562 * 13 11 10 29 29 H 1.09000 * 109.47319 * 299.99842 * 14 13 11 30 30 H 1.08996 * 109.47236 * 60.00639 * 14 13 11 31 31 H 1.09000 * 109.47248 * 299.99993 * 15 14 13 32 32 H 1.08996 * 109.46721 * 60.00430 * 15 14 13 33 33 H 1.08994 * 110.48479 * 335.78699 * 18 16 15 34 34 H 1.09001 * 110.48171 * 98.29696 * 18 16 15 35 35 H 1.09000 * 110.75366 * 156.26083 * 19 18 16 36 36 H 1.09004 * 110.75175 * 279.44569 * 19 18 16 37 37 H 1.09003 * 110.48407 * 80.73991 * 20 19 18 38 38 H 1.09001 * 110.48859 * 203.37778 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8218 -0.0001 12 8 6.1150 -1.8977 0.0004 13 7 5.7739 -4.0926 -0.0008 14 6 7.2143 -4.3603 -0.0014 15 6 7.4520 -5.8717 -0.0014 16 6 8.9562 -6.1513 -0.0014 17 1 9.4341 -5.6221 -0.8258 18 6 9.2119 -7.6675 -0.1277 19 6 10.4412 -7.9222 0.7794 20 6 10.1837 -6.9756 1.9779 21 6 9.5741 -5.7115 1.3374 22 9 10.5733 -4.7582 1.1138 23 9 8.5837 -5.1814 2.1712 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.6798 -0.8895 26 1 3.8745 -0.6810 0.8905 27 1 3.3694 -3.3127 -0.0009 28 1 5.1436 -4.8297 -0.0016 29 1 7.6651 -3.9212 -0.8914 30 1 7.6657 -3.9219 0.8886 31 1 7.0013 -6.3104 0.8888 32 1 7.0005 -6.3105 -0.8912 33 1 8.3502 -8.2307 0.2304 34 1 9.4364 -7.9316 -1.1611 35 1 10.4706 -8.9614 1.1072 36 1 11.3637 -7.6551 0.2637 37 1 9.4790 -7.4272 2.6762 38 1 11.1198 -6.7345 2.4816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883655607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:24 Heat of formation + Delta-G solvation = -149.605873 kcal Electronic energy + Delta-G solvation = -21500.136477 eV Core-core repulsion = 17819.519870 eV Total energy + Delta-G solvation = -3680.616607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.139 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -49.15513 -47.18288 -39.29405 -38.14034 -35.16625 -34.07210 -32.42015 -31.75362 -28.53761 -27.95755 -26.57352 -23.05963 -21.99498 -21.42190 -20.63219 -20.08896 -18.18398 -17.90860 -17.10831 -16.54486 -16.28666 -15.76238 -15.33294 -14.78618 -14.57932 -14.47307 -14.14984 -13.86349 -13.66384 -13.40162 -13.32475 -13.07776 -12.43028 -12.40946 -12.31574 -12.10237 -11.87167 -11.79689 -11.53926 -11.24048 -11.16986 -10.92178 -10.73376 -10.62961 -9.91677 -9.52809 -9.40322 -8.77576 -8.68784 -7.93684 -6.16815 -4.18263 3.26571 3.32331 3.39251 3.43217 3.48430 3.57895 3.82289 3.89720 4.01998 4.38777 4.52458 4.59214 4.71493 4.82059 4.87346 4.90466 5.07693 5.15250 5.19033 5.21937 5.30587 5.41712 5.44318 5.50795 5.63962 5.73027 5.97338 6.07126 6.80444 6.84919 7.17781 7.31147 7.47460 7.64209 8.33667 8.75013 8.87673 9.28847 9.45812 10.95227 Molecular weight = 276.14amu Principal moments of inertia in cm(-1) A = 0.043249 B = 0.003119 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.251465 B = 8974.371629 C = 9283.431197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.724 5.724 11 C 0.694 3.306 12 O -0.604 6.604 13 N -0.754 5.754 14 C 0.131 3.869 15 C -0.124 4.124 16 C -0.128 4.128 17 H 0.104 0.896 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.162 4.162 21 C 0.280 3.720 22 F -0.197 7.197 23 F -0.190 7.190 24 H 0.267 0.733 25 H 0.018 0.982 26 H 0.023 0.977 27 H 0.392 0.608 28 H 0.392 0.608 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.296 -19.997 1.021 28.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.376 5.376 11 C 0.393 3.607 12 O -0.483 6.483 13 N -0.411 5.411 14 C 0.006 3.994 15 C -0.161 4.161 16 C -0.147 4.147 17 H 0.122 0.878 18 C -0.155 4.155 19 C -0.161 4.161 20 C -0.200 4.200 21 C 0.244 3.756 22 F -0.178 7.178 23 F -0.170 7.170 24 H 0.077 0.923 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.225 0.775 28 H 0.225 0.775 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 20.839 -18.918 1.044 28.164 hybrid contribution -0.290 0.438 0.064 0.529 sum 20.549 -18.480 1.108 27.658 Atomic orbital electron populations 1.69884 1.06211 1.27374 1.49729 1.24783 0.94789 0.99176 0.93916 0.86807 0.80644 0.83152 0.79053 1.19863 1.20960 1.18393 1.21105 0.88600 0.95169 1.53024 0.90318 1.19351 0.94757 0.77744 0.96624 1.45377 1.03710 1.10978 1.77529 1.16123 0.83528 0.82734 0.78267 1.90865 1.55415 1.43250 1.58764 1.45041 1.07311 1.06551 1.82196 1.21308 0.81249 0.94045 1.02790 1.21804 0.93874 0.96666 1.03802 1.22764 0.97397 0.98621 0.95962 0.87756 1.22424 0.98640 0.93300 1.01091 1.22478 0.98742 0.99725 0.95157 1.23368 1.03166 0.93976 0.99534 1.21853 0.78079 0.84976 0.90680 1.93030 1.61937 1.67587 1.95254 1.93004 1.62257 1.88112 1.73660 0.92314 0.96402 0.95934 0.77518 0.77493 0.92221 0.90802 0.90176 0.90032 0.90222 0.90042 0.89953 0.90443 0.88334 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.54 -15.25 9.83 -34.44 -0.34 -15.59 16 8 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 9 C 0.24 6.14 4.50 -5.19 -0.02 6.12 16 10 N -0.72 -15.60 5.55 -66.41 -0.37 -15.96 16 11 C 0.69 14.56 8.57 -86.91 -0.74 13.82 16 12 O -0.60 -15.25 16.34 5.29 0.09 -15.16 16 13 N -0.75 -11.51 5.56 -65.22 -0.36 -11.87 16 14 C 0.13 1.77 5.39 -4.04 -0.02 1.75 16 15 C -0.12 -1.08 4.24 -26.73 -0.11 -1.19 16 16 C -0.13 -0.98 2.78 -89.50 -0.25 -1.23 16 17 H 0.10 0.81 8.02 -51.93 -0.42 0.39 16 18 C -0.12 -0.58 6.36 -25.07 -0.16 -0.74 16 19 C -0.12 -0.56 6.91 -24.74 -0.17 -0.74 16 20 C -0.16 -1.04 6.40 -25.08 -0.16 -1.20 16 21 C 0.28 2.67 2.29 -25.61 -0.06 2.62 16 22 F -0.20 -2.32 17.04 2.25 0.04 -2.28 16 23 F -0.19 -2.32 13.39 2.25 0.03 -2.29 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 26 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 27 H 0.39 7.34 8.34 -40.82 -0.34 7.00 16 28 H 0.39 4.66 8.49 -40.82 -0.35 4.32 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.17 5.95 -51.93 -0.31 0.86 16 31 H 0.08 0.67 7.63 -51.93 -0.40 0.28 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.35 7.85 -51.93 -0.41 -0.06 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.55 8.12 -51.93 -0.42 0.13 16 38 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -34.91 316.94 -7.35 -42.26 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.52 Total: 3.65 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -2.14 Total: 5.75 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.04 Total: -54.06 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.09 Total: -15.16 kcal Atomic # 9 Polarization: -4.64 SS G_CDS: 0.07 Total: -4.57 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.91 -7.35 -42.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883655607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.348 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds