Wall clock time and date at job start Mon Mar 30 2020 20:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35675 * 116.99696 * 2 1 4 4 C 1.38824 * 119.80469 * 180.02562 * 3 2 1 5 5 C 1.38699 * 119.25003 * 180.21274 * 4 3 2 6 6 C 1.38073 * 118.71873 * 359.06296 * 5 4 3 7 7 C 1.38664 * 118.86226 * 1.16582 * 6 5 4 8 8 N 1.31743 * 121.14658 * 359.28075 * 7 6 5 9 9 C 1.50460 * 122.77946 * 181.59260 * 6 5 4 10 10 C 1.53155 * 110.64478 * 339.28711 * 9 6 5 11 11 N 1.47207 * 107.87004 * 47.81198 * 10 9 6 12 12 C 1.34780 * 121.29290 * 115.58243 * 11 10 9 13 13 O 1.21279 * 119.99877 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99882 * 180.02562 * 12 11 10 15 15 C 1.50701 * 109.46989 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00295 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99900 * 179.97438 * 15 14 12 18 18 N 1.31515 * 120.00080 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99976 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47010 * 59.99673 * 19 17 15 21 21 H 1.48496 * 109.47059 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46833 * 300.00068 * 19 17 15 23 23 C 1.46783 * 117.41192 * 295.60275 * 11 10 9 24 24 H 1.08992 * 109.47222 * 60.00008 * 1 2 3 25 25 H 1.09003 * 109.47000 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47207 * 299.99722 * 1 2 3 27 27 H 1.08002 * 120.37198 * 359.92936 * 4 3 2 28 28 H 1.08005 * 119.42543 * 179.27183 * 7 6 5 29 29 H 1.08996 * 109.21963 * 100.16587 * 9 6 5 30 30 H 1.09001 * 109.21648 * 219.50339 * 9 6 5 31 31 H 1.09000 * 110.07946 * 288.09644 * 10 9 6 32 32 H 1.09005 * 109.65382 * 167.28361 * 10 9 6 33 33 H 1.09002 * 109.46646 * 299.99458 * 14 12 11 34 34 H 1.08998 * 109.47507 * 59.99722 * 14 12 11 35 35 H 0.97003 * 119.99710 * 180.02562 * 18 17 15 36 36 H 1.09001 * 109.46512 * 284.38669 * 23 11 10 37 37 H 1.09002 * 109.46222 * 164.41764 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4315 1.2769 -0.0005 5 6 4.0491 2.5188 0.0040 6 6 3.2604 3.6520 -0.0110 7 6 1.8813 3.5079 -0.0052 8 7 1.3208 2.3156 0.0001 9 6 3.8335 5.0429 -0.0427 10 6 5.2830 5.0411 0.4516 11 7 5.9942 3.9522 -0.2380 12 6 7.0106 4.2064 -1.0857 13 8 7.3560 5.3505 -1.2925 14 6 7.7180 3.0692 -1.7765 15 6 8.8057 3.6187 -2.6632 16 1 8.9687 4.6848 -2.7204 17 6 9.5934 2.7604 -3.4006 18 7 9.3959 1.4620 -3.3298 19 14 10.9421 3.4415 -4.4991 20 1 11.9150 4.2023 -3.6745 21 1 11.6390 2.3208 -5.1799 22 1 10.3438 4.3428 -5.5164 23 6 5.5529 2.5788 0.0332 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0225 0.3730 0.0002 28 1 1.2558 4.3883 -0.0047 29 1 3.7933 5.4243 -1.0630 30 1 3.2415 5.6897 0.6049 31 1 5.3110 4.8751 1.5285 32 1 5.7525 5.9958 0.2142 33 1 8.1571 2.4074 -1.0299 34 1 7.0037 2.5110 -2.3818 35 1 9.9503 0.8582 -3.8484 36 1 5.9097 2.2699 1.0157 37 1 5.9579 1.9104 -0.7267 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198779.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:52 Heat of formation + Delta-G solvation = -39.390423 kcal Electronic energy + Delta-G solvation = -20958.968099 eV Core-core repulsion = 17701.527228 eV Total energy + Delta-G solvation = -3257.440871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.97539 -39.27949 -38.01746 -35.80641 -33.22980 -32.78096 -32.22208 -29.85499 -28.72760 -27.15266 -26.06285 -24.26407 -23.23299 -22.65844 -20.91430 -18.67242 -17.96974 -17.05373 -16.62353 -16.11599 -15.78129 -15.48173 -15.23785 -14.82265 -14.49194 -14.33468 -14.14013 -13.88199 -13.15105 -12.92709 -12.73342 -12.60450 -12.31598 -12.08886 -11.98999 -11.70295 -11.21767 -11.17176 -11.00556 -10.79235 -10.63087 -9.97729 -9.72896 -9.55289 -9.25428 -8.71879 -8.45272 -8.39792 -8.22811 -6.07726 -4.07526 1.07143 1.19958 2.97294 3.36618 3.38888 3.41997 3.51358 3.59023 3.66268 4.23128 4.46508 4.57934 4.81421 4.81768 4.95341 5.10534 5.15626 5.26825 5.30743 5.35269 5.41923 5.51980 5.56180 5.66580 5.71274 5.81144 5.84087 6.01427 6.17613 6.31272 6.44520 6.88037 7.13016 7.15276 7.26835 7.76871 7.88360 7.94859 8.31445 9.02128 9.11084 9.57625 11.04541 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023200 B = 0.004271 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.623927 B = 6553.723883 C = 7460.010676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.308 6.308 3 C 0.311 3.689 4 C -0.182 4.182 5 C -0.011 4.011 6 C -0.155 4.155 7 C 0.139 3.861 8 N -0.542 5.542 9 C -0.086 4.086 10 C 0.109 3.891 11 N -0.631 5.631 12 C 0.522 3.478 13 O -0.540 6.540 14 C 0.006 3.994 15 C -0.511 4.511 16 H 0.074 0.926 17 C 0.056 3.944 18 N -0.900 5.900 19 Si 0.902 3.098 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.148 3.852 24 H 0.057 0.943 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.146 0.854 28 H 0.158 0.842 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.263 0.737 36 H 0.085 0.915 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.783 -0.771 9.615 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.216 6.216 3 C 0.133 3.867 4 C -0.203 4.203 5 C -0.019 4.019 6 C -0.158 4.158 7 C -0.018 4.018 8 N -0.265 5.265 9 C -0.124 4.124 10 C -0.014 4.014 11 N -0.367 5.367 12 C 0.315 3.685 13 O -0.415 6.415 14 C -0.033 4.033 15 C -0.549 4.549 16 H 0.093 0.907 17 C -0.145 4.145 18 N -0.540 5.540 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.201 1.201 23 C 0.025 3.975 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.075 0.925 27 H 0.164 0.836 28 H 0.175 0.825 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.287 -0.673 9.405 19.691 hybrid contribution 1.098 0.241 -0.578 1.264 sum -16.189 -0.433 8.827 18.444 Atomic orbital electron populations 1.22814 0.77515 1.02731 1.02283 1.86238 1.22658 1.24567 1.88104 1.19676 0.89248 0.84574 0.93160 1.20916 0.92037 0.98947 1.08438 1.20033 0.96804 0.91706 0.93357 1.20298 0.94203 0.96177 1.05084 1.22395 0.91993 0.93609 0.93832 1.67191 1.40983 0.98776 1.19522 1.20728 0.96645 0.92229 1.02843 1.21509 0.90727 0.93206 0.95941 1.48385 1.35656 1.05716 1.46958 1.22044 0.77418 0.92646 0.76417 1.90532 1.64616 1.23985 1.62357 1.19273 0.96018 0.91800 0.96180 1.21122 1.14848 0.94461 1.24465 0.90743 1.24994 0.97712 0.94774 0.96986 1.69940 1.40243 1.01893 1.41894 0.86484 0.81659 0.78309 0.80577 1.20093 1.21328 1.20124 1.20458 0.88269 0.85513 1.03273 0.92427 0.88792 0.92499 0.83623 0.82526 0.89992 0.90001 0.91636 0.88548 0.93340 0.93421 0.92798 0.89736 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.39 101.05 1.05 1.43 16 2 O -0.31 -3.89 10.48 -18.73 -0.20 -4.08 16 3 C 0.31 4.22 7.49 -17.15 -0.13 4.09 16 4 C -0.18 -2.40 9.68 -39.19 -0.38 -2.78 16 5 C -0.01 -0.15 5.82 -104.60 -0.61 -0.76 16 6 C -0.15 -1.98 5.76 -104.64 -0.60 -2.58 16 7 C 0.14 1.64 10.77 -17.43 -0.19 1.45 16 8 N -0.54 -7.15 9.22 -13.24 -0.12 -7.27 16 9 C -0.09 -1.01 5.91 -27.92 -0.17 -1.18 16 10 C 0.11 1.53 6.45 -3.58 -0.02 1.51 16 11 N -0.63 -10.91 2.93 -174.26 -0.51 -11.42 16 12 C 0.52 11.76 7.71 -10.98 -0.08 11.67 16 13 O -0.54 -13.79 14.94 5.56 0.08 -13.70 16 14 C 0.01 0.16 3.88 -29.04 -0.11 0.05 16 15 C -0.51 -14.68 8.92 -34.44 -0.31 -14.99 16 16 H 0.07 2.23 6.75 -52.49 -0.35 1.88 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 19 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.15 2.16 6.13 -5.12 -0.03 2.13 16 24 H 0.06 0.53 8.11 -51.93 -0.42 0.11 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 27 H 0.15 1.70 8.06 -52.49 -0.42 1.27 16 28 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 0.72 8.12 -51.93 -0.42 0.29 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 1.48 7.07 -51.93 -0.37 1.11 16 33 H 0.05 1.21 8.11 -51.93 -0.42 0.79 16 34 H 0.05 1.21 7.58 -51.93 -0.39 0.82 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.11 1.77 6.19 -51.93 -0.32 1.45 16 LS Contribution 313.10 15.07 4.72 4.72 Total: -1.00 -33.26 313.10 -6.78 -40.04 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.79 Total: -1.51 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.68 Total: 1.55 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: 0.10 Total: -43.99 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.11 Total: -17.79 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.26 -6.78 -40.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198779.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.655 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds