Wall clock time and date at job start Mon Mar 30 2020 20:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48499 * 109.47046 * 269.99396 * 3 2 1 5 5 H 1.48499 * 109.47078 * 29.99480 * 3 2 1 6 6 H 1.48500 * 109.47106 * 149.99725 * 3 2 1 7 7 C 1.38877 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00237 * 0.02562 * 7 2 1 9 9 N 1.36889 * 119.99653 * 180.02562 * 7 2 1 10 10 C 1.38220 * 119.99606 * 180.02562 * 9 7 2 11 11 N 1.32487 * 119.83148 * 5.02787 * 10 9 7 12 12 C 1.31779 * 121.77631 * 180.02562 * 11 10 9 13 13 C 1.38453 * 121.22385 * 0.02562 * 12 11 10 14 14 C 1.38355 * 119.51386 * 359.68096 * 13 12 11 15 15 C 1.39958 * 118.36336 * 0.55851 * 14 13 12 16 16 C 1.47451 * 120.61145 * 179.76205 * 15 14 13 17 17 O 1.21598 * 120.00251 * 126.28731 * 16 15 14 18 18 N 1.34785 * 119.99773 * 306.28759 * 16 15 14 19 19 C 1.47077 * 120.88059 * 174.21320 * 18 16 15 20 20 C 1.53238 * 108.52074 * 128.83729 * 19 18 16 21 21 N 1.46897 * 109.34154 * 53.83020 * 20 19 18 22 22 C 1.46903 * 111.26925 * 296.89623 * 21 20 19 23 23 C 1.47078 * 120.88172 * 354.23149 * 18 16 15 24 24 H 0.97000 * 120.00262 * 0.02562 * 1 2 3 25 25 H 0.97001 * 120.00298 * 0.02562 * 9 7 2 26 26 H 1.07997 * 119.39031 * 179.97438 * 12 11 10 27 27 H 1.08006 * 120.24532 * 179.97438 * 13 12 11 28 28 H 1.07998 * 120.81486 * 180.31942 * 14 13 12 29 29 H 1.08997 * 109.63110 * 9.12222 * 19 18 16 30 30 H 1.09004 * 109.78452 * 248.64404 * 19 18 16 31 31 H 1.08997 * 109.49511 * 293.86772 * 20 19 18 32 32 H 1.09001 * 109.51107 * 173.80194 * 20 19 18 33 33 H 1.00900 * 111.00336 * 61.03751 * 21 20 19 34 34 H 1.08995 * 109.49615 * 183.06494 * 22 21 20 35 35 H 1.09006 * 109.48594 * 303.14232 * 22 21 20 36 36 H 1.09005 * 109.62610 * 350.87979 * 23 18 16 37 37 H 1.09002 * 109.62746 * 111.25360 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0095 -1.2027 0.0005 8 1 1.4695 -2.1380 0.0005 9 7 3.3784 -1.2027 0.0011 10 6 4.0694 -2.3997 0.0011 11 7 3.4075 -3.5429 -0.1002 12 6 4.0273 -4.7058 -0.1036 13 6 5.4057 -4.7847 -0.0004 14 6 6.1492 -3.6223 0.1017 15 6 5.4713 -2.3979 0.1088 16 6 6.2140 -1.1291 0.2209 17 8 6.0451 -0.2508 -0.6030 18 7 7.0803 -0.9427 1.2366 19 6 7.9237 0.2606 1.2983 20 6 7.7672 0.8941 2.6848 21 7 8.0480 -0.1147 3.7151 22 6 7.0793 -1.2176 3.6589 23 6 7.2075 -1.9376 2.3124 24 1 -0.4850 0.8400 -0.0004 25 1 3.8634 -0.3626 0.0014 26 1 3.4493 -5.6142 -0.1876 27 1 5.8975 -5.7463 -0.0045 28 1 7.2259 -3.6592 0.1781 29 1 7.6064 0.9697 0.5338 30 1 8.9666 -0.0111 1.1353 31 1 6.7481 1.2617 2.8039 32 1 8.4673 1.7233 2.7873 33 1 8.9930 -0.4592 3.6358 34 1 7.2806 -1.9201 4.4676 35 1 6.0696 -0.8205 3.7645 36 1 6.4166 -2.6818 2.2182 37 1 8.1796 -2.4262 2.2462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533926.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:59 Heat of formation + Delta-G solvation = 21.108336 kcal Electronic energy + Delta-G solvation = -21910.094302 eV Core-core repulsion = 18687.569605 eV Total energy + Delta-G solvation = -3222.524697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34131 -38.83839 -37.31202 -35.49377 -33.54882 -32.31530 -31.89892 -30.89923 -29.17434 -26.39667 -24.78797 -23.93849 -23.31527 -21.64487 -21.31188 -19.54639 -18.40303 -17.16486 -16.92435 -16.04642 -15.63119 -15.32198 -14.95981 -14.87069 -14.45526 -14.35619 -13.74187 -13.56609 -13.43725 -13.13248 -12.86405 -12.63488 -12.38293 -12.07613 -11.68496 -11.58160 -11.45314 -11.37358 -11.21718 -10.72236 -10.50907 -10.18589 -9.66504 -9.25740 -9.06975 -8.87840 -8.44917 -8.14637 -7.29691 -6.61720 -3.88042 1.73477 2.26404 2.98884 3.02808 3.05056 3.11143 3.23335 3.93069 4.09415 4.45226 4.54722 4.77175 4.85449 4.97823 5.05172 5.08502 5.12644 5.29322 5.42784 5.51487 5.55900 5.66514 5.74570 5.83745 5.88523 5.95867 6.17022 6.36041 6.58060 6.69163 6.74874 6.90382 7.15417 7.25313 7.39812 7.55015 7.93719 8.39679 8.49081 8.72775 9.09759 9.38353 10.47643 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.014014 B = 0.008168 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.571271 B = 3427.055432 C = 4758.370415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.044 3.956 3 Si 0.875 3.125 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.289 4.289 8 H 0.135 0.865 9 N -0.532 5.532 10 C 0.387 3.613 11 N -0.531 5.531 12 C 0.183 3.817 13 C -0.313 4.313 14 C 0.015 3.985 15 C -0.315 4.315 16 C 0.581 3.419 17 O -0.551 6.551 18 N -0.615 5.615 19 C 0.072 3.928 20 C 0.043 3.957 21 N -0.684 5.684 22 C 0.041 3.959 23 C 0.071 3.929 24 H 0.280 0.720 25 H 0.393 0.607 26 H 0.142 0.858 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.339 0.661 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.719 -3.108 6.194 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.163 4.163 3 Si 0.700 3.300 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.419 4.419 8 H 0.152 0.848 9 N -0.136 5.136 10 C 0.141 3.859 11 N -0.248 5.248 12 C 0.013 3.987 13 C -0.339 4.339 14 C -0.011 4.011 15 C -0.329 4.329 16 C 0.373 3.627 17 O -0.429 6.429 18 N -0.350 5.350 19 C -0.052 4.052 20 C -0.088 4.088 21 N -0.312 5.312 22 C -0.089 4.089 23 C -0.054 4.054 24 H 0.091 0.909 25 H 0.232 0.768 26 H 0.159 0.841 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.157 0.843 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.816 -1.806 6.190 15.247 hybrid contribution 1.803 0.621 -0.810 2.072 sum 15.620 -1.185 5.380 16.562 Atomic orbital electron populations 1.69655 1.05626 1.28421 1.45237 1.25131 0.95678 0.98514 0.96948 0.86666 0.79877 0.83448 0.79976 1.18821 1.19497 1.19149 1.19814 0.79049 0.97320 1.45722 0.84753 1.41388 1.07179 1.04217 1.60844 1.17661 0.85648 0.86649 0.95899 1.67283 1.39230 0.96944 1.21351 1.22390 0.91782 0.94547 0.89985 1.21154 0.95322 0.97612 1.19845 1.20923 0.98026 0.90941 0.91233 1.19288 0.93298 0.92922 1.27399 1.18404 0.77503 0.87050 0.79743 1.90726 1.65293 1.45237 1.41669 1.48072 1.41004 1.21600 1.24323 1.22277 0.94193 0.88644 1.00111 1.22410 1.03206 0.94846 0.88299 1.60615 1.06592 1.14717 1.49317 1.22440 0.97755 0.93061 0.95643 1.22516 1.02964 0.92229 0.87672 0.90931 0.76848 0.84073 0.86635 0.86951 0.88622 0.91883 0.90329 0.89568 0.84348 0.89365 0.90178 0.88040 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.18 13.96 55.49 0.77 -23.41 16 2 C 0.04 1.21 5.50 -17.45 -0.10 1.12 16 3 Si 0.88 20.75 27.74 -169.99 -4.71 16.04 16 4 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -6.28 6.52 56.52 0.37 -5.91 16 7 C -0.29 -8.07 10.18 -15.06 -0.15 -8.22 16 8 H 0.14 4.03 7.31 -52.49 -0.38 3.64 16 9 N -0.53 -13.70 5.11 -10.95 -0.06 -13.76 16 10 C 0.39 9.13 7.43 -155.15 -1.15 7.98 16 11 N -0.53 -12.10 9.08 -12.18 -0.11 -12.21 16 12 C 0.18 3.31 11.17 -17.50 -0.20 3.11 16 13 C -0.31 -4.97 10.09 -39.46 -0.40 -5.37 16 14 C 0.01 0.24 7.98 -38.89 -0.31 -0.07 16 15 C -0.32 -6.38 4.62 -104.61 -0.48 -6.86 16 16 C 0.58 11.58 6.57 -12.50 -0.08 11.50 16 17 O -0.55 -12.81 15.21 5.28 0.08 -12.73 16 18 N -0.62 -9.47 3.01 -173.72 -0.52 -9.99 16 19 C 0.07 0.94 6.59 -3.60 -0.02 0.91 16 20 C 0.04 0.49 6.70 -3.70 -0.02 0.46 16 21 N -0.68 -7.14 6.85 -113.51 -0.78 -7.92 16 22 C 0.04 0.46 6.70 -3.70 -0.02 0.44 16 23 C 0.07 0.87 5.69 -3.61 -0.02 0.85 16 24 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.39 10.08 3.70 -40.82 -0.15 9.93 16 26 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 27 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 28 H 0.11 1.54 7.80 -52.49 -0.41 1.14 16 29 H 0.10 1.42 7.04 -51.93 -0.37 1.06 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.34 2.86 8.83 -39.29 -0.35 2.51 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.10 1.39 5.55 -51.93 -0.29 1.10 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 304.43 15.07 4.59 4.59 Total: -1.00 -31.36 304.43 -8.20 -39.56 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -4.50 Total: 14.00 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -2.97 Total: 5.84 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -0.69 Total: -67.29 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.71 Total: 16.04 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.36 -8.20 -39.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533926.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.665 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds