Wall clock time and date at job start Mon Mar 30 2020 20:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99867 * 2 1 4 4 O 1.20831 * 120.00225 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00061 * 180.02562 * 3 2 1 6 6 H 1.09001 * 115.56024 * 325.68047 * 5 3 2 7 7 C 1.52997 * 117.50411 * 111.37469 * 5 3 2 8 8 C 1.52998 * 117.50015 * 180.02562 * 5 3 2 9 9 H 1.08998 * 117.52115 * 145.02832 * 8 5 3 10 10 C 1.53002 * 117.50075 * 359.97438 * 8 5 3 11 11 N 1.46502 * 109.47421 * 174.99254 * 10 8 5 12 12 C 1.39073 * 119.99832 * 179.97438 * 11 10 8 13 13 C 1.38744 * 119.66110 * 359.97438 * 12 11 10 14 14 C 1.40772 * 118.67210 * 179.97438 * 13 12 11 15 15 C 1.41548 * 120.99589 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00064 * 336.28950 * 15 14 13 17 17 C 1.40028 * 119.99972 * 156.01640 * 15 14 13 18 18 N 1.30742 * 120.00193 * 343.44341 * 17 15 14 19 19 Si 1.86802 * 120.00011 * 163.45175 * 17 15 14 20 20 H 1.48502 * 109.46775 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47198 * 119.99814 * 19 17 15 22 22 H 1.48503 * 109.46967 * 240.00048 * 19 17 15 23 23 C 1.41192 * 118.01219 * 0.25737 * 14 13 12 24 24 C 1.36566 * 119.14461 * 359.46993 * 23 14 13 25 25 N 1.32091 * 121.26416 * 0.54325 * 24 23 14 26 26 H 1.08997 * 109.47321 * 60.00224 * 1 2 3 27 27 H 1.09007 * 109.47070 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47243 * 299.99815 * 1 2 3 29 29 H 1.09001 * 117.49270 * 0.02562 * 7 5 3 30 30 H 1.08998 * 117.51958 * 214.97461 * 7 5 3 31 31 H 1.08997 * 109.47315 * 54.98371 * 10 8 5 32 32 H 1.09001 * 109.46844 * 294.98665 * 10 8 5 33 33 H 0.96999 * 119.99396 * 359.97438 * 11 10 8 34 34 H 1.08000 * 120.66283 * 0.02693 * 13 12 11 35 35 H 0.97003 * 120.00195 * 180.02562 * 18 17 15 36 36 H 1.07998 * 120.42974 * 179.75066 * 23 14 13 37 37 H 1.07996 * 119.36287 * 180.25633 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0787 0.4884 0.5535 7 6 4.2455 1.8061 -1.2645 8 6 4.2007 2.6671 0.0001 9 1 5.1306 2.7966 0.5538 10 6 3.2587 3.8728 0.0006 11 7 4.0422 5.1047 0.1217 12 6 3.3998 6.3380 0.1440 13 6 2.0167 6.3935 0.0504 14 6 1.3880 7.6527 0.0756 15 6 -0.0199 7.7666 -0.0170 16 1 -0.5962 6.9783 -0.4785 17 6 -0.6659 8.8986 0.4948 18 7 -0.0409 9.6862 1.3304 19 14 -2.4210 9.2834 -0.0163 20 1 -2.8993 8.2452 -0.9643 21 1 -3.2944 9.2980 1.1846 22 1 -2.4642 10.6131 -0.6761 23 6 2.2041 8.7992 0.1898 24 6 3.5580 8.6454 0.2818 25 7 4.1152 7.4481 0.2551 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.6037 2.0989 -2.0954 30 1 5.2047 1.3693 -1.5422 31 1 2.5704 3.7957 0.8422 32 1 2.6929 3.8922 -0.9309 33 1 5.0090 5.0601 0.1864 34 1 1.4339 5.4886 -0.0390 35 1 -0.4886 10.4701 1.6853 36 1 1.7631 9.7849 0.2088 37 1 4.1852 9.5197 0.3735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161040753.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:17 Heat of formation + Delta-G solvation = -25.508123 kcal Electronic energy + Delta-G solvation = -20612.019530 eV Core-core repulsion = 17355.180640 eV Total energy + Delta-G solvation = -3256.838889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76748 -38.49007 -37.77340 -36.08400 -34.57937 -33.50363 -30.51271 -28.81385 -28.10223 -25.79303 -25.65137 -24.43386 -21.82089 -21.04935 -20.59621 -20.10410 -17.81486 -17.52179 -16.63852 -16.39449 -15.67727 -15.41215 -14.90192 -14.60643 -13.98972 -13.72750 -13.70360 -13.36345 -13.13461 -12.87248 -12.65136 -12.31654 -12.12948 -12.11331 -11.39996 -11.33502 -11.09467 -10.90447 -10.83161 -10.70056 -10.48584 -10.23902 -10.12608 -9.69422 -9.32630 -8.78180 -7.85353 -7.81361 -6.75202 -6.34279 -4.45934 2.02198 2.52489 2.85437 3.08686 3.15042 3.16229 3.42608 3.49778 3.94423 4.02546 4.53592 4.59049 4.71101 4.80092 4.89214 4.99218 5.08493 5.25967 5.38113 5.51212 5.57353 5.77726 5.88439 6.14032 6.24269 6.27730 6.50520 6.89799 7.00895 7.09011 7.13113 7.36932 7.65951 7.70469 7.94352 8.15156 8.21995 8.55312 8.81765 8.94186 9.00663 9.87304 10.20138 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.004710 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.873044 B = 5943.375805 C = 7495.062088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.482 3.518 4 O -0.485 6.485 5 C -0.162 4.162 6 H 0.137 0.863 7 C -0.143 4.143 8 C -0.122 4.122 9 H 0.124 0.876 10 C 0.176 3.824 11 N -0.746 5.746 12 C 0.397 3.603 13 C -0.332 4.332 14 C 0.155 3.845 15 C -0.456 4.456 16 H 0.079 0.921 17 C 0.079 3.921 18 N -0.786 5.786 19 Si 0.909 3.091 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.271 1.271 23 C -0.245 4.245 24 C 0.114 3.886 25 N -0.625 5.625 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.387 0.613 34 H 0.100 0.900 35 H 0.280 0.720 36 H 0.122 0.878 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.169 -15.988 -2.540 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.324 3.676 4 O -0.371 6.371 5 C -0.182 4.182 6 H 0.155 0.845 7 C -0.180 4.180 8 C -0.141 4.141 9 H 0.142 0.858 10 C 0.051 3.949 11 N -0.384 5.384 12 C 0.167 3.833 13 C -0.358 4.358 14 C 0.147 3.853 15 C -0.487 4.487 16 H 0.097 0.903 17 C -0.140 4.140 18 N -0.412 5.412 19 Si 0.733 3.267 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.196 1.196 23 C -0.270 4.270 24 C -0.035 4.035 25 N -0.349 5.349 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.220 0.780 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.140 0.860 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.626 -15.638 -2.351 16.224 hybrid contribution -1.627 0.219 -0.041 1.642 sum 1.999 -15.420 -2.393 15.732 Atomic orbital electron populations 1.23280 0.76109 1.03497 1.02972 1.86455 1.23503 1.33447 1.84333 1.22701 0.90454 0.81449 0.72945 1.90796 1.66740 1.35653 1.43919 1.21788 0.88547 1.00992 1.06863 0.84529 1.23218 1.01994 1.01710 0.91106 1.22719 1.00810 0.89855 1.00715 0.85826 1.20785 0.91386 0.80369 1.02364 1.44147 1.07625 1.02183 1.84424 1.17905 0.88511 0.84850 0.92076 1.21224 0.92334 0.97867 1.24422 1.17613 0.93344 0.90068 0.84269 1.19612 0.91897 1.03279 1.33943 0.90306 1.25950 1.00490 0.94967 0.92597 1.69821 1.38485 1.12110 1.20761 0.86258 0.81670 0.79301 0.79465 1.18364 1.19956 1.19628 1.21760 0.93122 0.99965 1.12156 1.21336 0.92941 0.92484 0.96758 1.66731 1.40415 0.97673 1.30041 0.91719 0.88232 0.91662 0.87703 0.87005 0.91091 0.92061 0.77983 0.88148 0.90897 0.86042 0.86521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.15 10.57 -39.24 -0.41 -4.56 16 3 C 0.48 6.32 7.72 36.00 0.28 6.60 16 4 O -0.49 -8.12 12.86 -18.75 -0.24 -8.36 16 5 C -0.16 -1.68 6.30 -91.78 -0.58 -2.25 16 6 H 0.14 1.04 8.14 -51.93 -0.42 0.62 16 7 C -0.14 -1.37 9.88 -26.71 -0.26 -1.63 16 8 C -0.12 -1.45 5.85 -90.59 -0.53 -1.98 16 9 H 0.12 1.24 8.04 -51.93 -0.42 0.82 16 10 C 0.18 3.01 3.43 -4.04 -0.01 3.00 16 11 N -0.75 -14.72 5.73 -60.48 -0.35 -15.07 16 12 C 0.40 9.87 7.65 -154.99 -1.19 8.68 16 13 C -0.33 -8.88 9.12 -38.44 -0.35 -9.23 16 14 C 0.16 4.40 5.60 -106.56 -0.60 3.81 16 15 C -0.46 -12.66 9.12 -37.65 -0.34 -13.00 16 16 H 0.08 2.13 7.90 -52.49 -0.41 1.72 16 17 C 0.08 2.04 5.20 -17.34 -0.09 1.95 16 18 N -0.79 -20.78 10.93 55.55 0.61 -20.18 16 19 Si 0.91 19.06 29.59 -169.99 -5.03 14.03 16 20 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 C -0.25 -6.72 8.74 -39.06 -0.34 -7.06 16 24 C 0.11 2.92 11.10 -18.04 -0.20 2.72 16 25 N -0.62 -15.99 10.36 -12.82 -0.13 -16.12 16 26 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 27 H 0.10 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.10 1.10 8.03 -51.93 -0.42 0.68 16 30 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.39 6.71 -51.93 -0.35 1.04 16 32 H 0.06 1.15 7.08 -51.93 -0.37 0.78 16 33 H 0.39 6.79 8.52 -40.82 -0.35 6.45 16 34 H 0.10 2.64 6.71 -52.49 -0.35 2.29 16 35 H 0.28 6.66 8.29 -40.82 -0.34 6.33 16 36 H 0.12 3.36 6.21 -52.49 -0.33 3.03 16 37 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 317.90 15.07 4.79 4.79 Total: -1.00 -32.41 317.90 -8.58 -40.99 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -4.66 Total: 11.49 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -3.15 Total: -7.01 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.13 Total: -51.36 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.66 Total: -12.92 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.41 -8.58 -40.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161040753.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.478 kcal (2) G-P(sol) polarization free energy of solvation -32.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds