Wall clock time and date at job start Mon Mar 30 2020 20:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99867 * 2 1 4 4 O 1.20831 * 120.00225 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00061 * 180.02562 * 3 2 1 6 6 H 1.09001 * 115.56024 * 325.68047 * 5 3 2 7 7 C 1.52997 * 117.50411 * 111.37469 * 5 3 2 8 8 C 1.52998 * 117.50015 * 180.02562 * 5 3 2 9 9 H 1.08998 * 117.52115 * 145.02832 * 8 5 3 10 10 C 1.53002 * 117.50075 * 359.97438 * 8 5 3 11 11 N 1.46502 * 109.47421 * 174.99254 * 10 8 5 12 12 C 1.39073 * 119.99832 * 179.97438 * 11 10 8 13 13 C 1.38744 * 119.66110 * 359.97438 * 12 11 10 14 14 C 1.40772 * 118.67210 * 179.97438 * 13 12 11 15 15 C 1.41548 * 120.99589 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00064 * 336.28950 * 15 14 13 17 17 C 1.40028 * 119.99972 * 156.01640 * 15 14 13 18 18 N 1.30742 * 120.00193 * 343.44341 * 17 15 14 19 19 Si 1.86802 * 120.00011 * 163.45175 * 17 15 14 20 20 H 1.48502 * 109.46775 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47198 * 119.99814 * 19 17 15 22 22 H 1.48503 * 109.46967 * 240.00048 * 19 17 15 23 23 C 1.41192 * 118.01219 * 0.25737 * 14 13 12 24 24 C 1.36566 * 119.14461 * 359.46993 * 23 14 13 25 25 N 1.32091 * 121.26416 * 0.54325 * 24 23 14 26 26 H 1.08997 * 109.47321 * 60.00224 * 1 2 3 27 27 H 1.09007 * 109.47070 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47243 * 299.99815 * 1 2 3 29 29 H 1.09001 * 117.49270 * 0.02562 * 7 5 3 30 30 H 1.08998 * 117.51958 * 214.97461 * 7 5 3 31 31 H 1.08997 * 109.47315 * 54.98371 * 10 8 5 32 32 H 1.09001 * 109.46844 * 294.98665 * 10 8 5 33 33 H 0.96999 * 119.99396 * 359.97438 * 11 10 8 34 34 H 1.08000 * 120.66283 * 0.02693 * 13 12 11 35 35 H 0.97003 * 120.00195 * 180.02562 * 18 17 15 36 36 H 1.07998 * 120.42974 * 179.75066 * 23 14 13 37 37 H 1.07996 * 119.36287 * 180.25633 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0787 0.4884 0.5535 7 6 4.2455 1.8061 -1.2645 8 6 4.2007 2.6671 0.0001 9 1 5.1306 2.7966 0.5538 10 6 3.2587 3.8728 0.0006 11 7 4.0422 5.1047 0.1217 12 6 3.3998 6.3380 0.1440 13 6 2.0167 6.3935 0.0504 14 6 1.3880 7.6527 0.0756 15 6 -0.0199 7.7666 -0.0170 16 1 -0.5962 6.9783 -0.4785 17 6 -0.6659 8.8986 0.4948 18 7 -0.0409 9.6862 1.3304 19 14 -2.4210 9.2834 -0.0163 20 1 -2.8993 8.2452 -0.9643 21 1 -3.2944 9.2980 1.1846 22 1 -2.4642 10.6131 -0.6761 23 6 2.2041 8.7992 0.1898 24 6 3.5580 8.6454 0.2818 25 7 4.1152 7.4481 0.2551 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.6037 2.0989 -2.0954 30 1 5.2047 1.3693 -1.5422 31 1 2.5704 3.7957 0.8422 32 1 2.6929 3.8922 -0.9309 33 1 5.0090 5.0601 0.1864 34 1 1.4339 5.4886 -0.0390 35 1 -0.4886 10.4701 1.6853 36 1 1.7631 9.7849 0.2088 37 1 4.1852 9.5197 0.3735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161040753.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:17 Heat of formation + Delta-G solvation = -45.762105 kcal Electronic energy + Delta-G solvation = -20612.897808 eV Core-core repulsion = 17355.180640 eV Total energy + Delta-G solvation = -3257.717168 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.78804 -40.33270 -38.89249 -37.20629 -36.35408 -35.32192 -32.56973 -30.49120 -29.11392 -27.85289 -27.16846 -25.34037 -23.48628 -22.73249 -22.09268 -21.20051 -19.46504 -18.83756 -17.92561 -17.48671 -17.29079 -16.69229 -16.65730 -16.06865 -15.82699 -15.36568 -14.97620 -14.84780 -14.37095 -14.26751 -14.21297 -13.97206 -13.64959 -13.15859 -12.96449 -12.91139 -12.78004 -12.41188 -12.02164 -11.83958 -11.81358 -11.59578 -11.49536 -11.33493 -11.19571 -10.54569 -9.94361 -9.87253 -8.72318 -8.24302 -6.57661 0.95199 1.01633 1.16495 1.35835 1.51814 1.57021 1.65665 2.17940 2.40100 2.75507 2.78767 3.57138 3.70251 3.75317 3.81201 3.99455 4.23598 4.28293 4.28887 4.29923 4.60975 4.67486 4.80523 4.84592 4.90128 4.92526 4.99135 5.03735 5.08277 5.22990 5.29303 5.38049 5.61367 5.89418 6.11019 6.36708 6.53650 6.71198 6.85385 6.89401 7.08085 7.86148 8.25836 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016239 B = 0.004710 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.873044 B = 5943.375805 C = 7495.062088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.476 3.524 4 O -0.534 6.534 5 C -0.153 4.153 6 H 0.176 0.824 7 C -0.122 4.122 8 C -0.137 4.137 9 H 0.151 0.849 10 C 0.182 3.818 11 N -0.730 5.730 12 C 0.398 3.602 13 C -0.358 4.358 14 C 0.128 3.872 15 C -0.492 4.492 16 H 0.071 0.929 17 C 0.040 3.960 18 N -0.811 5.811 19 Si 0.989 3.011 20 H -0.262 1.262 21 H -0.261 1.261 22 H -0.257 1.257 23 C -0.270 4.270 24 C 0.118 3.882 25 N -0.630 5.630 26 H 0.056 0.944 27 H 0.137 0.863 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.153 0.847 31 H 0.041 0.959 32 H 0.038 0.962 33 H 0.401 0.599 34 H 0.090 0.910 35 H 0.293 0.707 36 H 0.114 0.886 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 -17.293 -2.739 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.321 3.679 4 O -0.423 6.423 5 C -0.172 4.172 6 H 0.193 0.807 7 C -0.158 4.158 8 C -0.155 4.155 9 H 0.169 0.831 10 C 0.058 3.942 11 N -0.367 5.367 12 C 0.166 3.834 13 C -0.385 4.385 14 C 0.120 3.880 15 C -0.522 4.522 16 H 0.089 0.911 17 C -0.178 4.178 18 N -0.437 5.437 19 Si 0.808 3.192 20 H -0.185 1.185 21 H -0.186 1.186 22 H -0.181 1.181 23 C -0.295 4.295 24 C -0.032 4.032 25 N -0.354 5.354 26 H 0.075 0.925 27 H 0.155 0.845 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.171 0.829 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.237 0.763 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.132 0.868 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.504 -17.004 -2.545 17.774 hybrid contribution -1.890 0.555 0.047 1.970 sum 2.614 -16.449 -2.498 16.841 Atomic orbital electron populations 1.23521 0.75071 1.05696 1.02165 1.86458 1.24594 1.32516 1.83735 1.23406 0.91797 0.81139 0.71546 1.90800 1.68033 1.37224 1.46250 1.22006 0.86689 1.00651 1.07885 0.80680 1.23368 1.03223 0.99571 0.89686 1.22593 1.00801 0.88205 1.03927 0.83104 1.20678 0.92091 0.81593 0.99862 1.44202 1.08465 1.01308 1.82700 1.18169 0.88267 0.86447 0.90564 1.21240 0.93510 0.97184 1.26613 1.18016 0.94250 0.91026 0.84746 1.19846 0.92160 1.04709 1.35521 0.91102 1.26860 1.05234 0.93881 0.91789 1.69844 1.40646 1.12458 1.20704 0.85079 0.75434 0.79341 0.79322 1.18527 1.18583 1.18079 1.21730 0.93977 0.99245 1.14508 1.21811 0.92759 0.93666 0.94979 1.66920 1.40029 0.97794 1.30662 0.92496 0.84486 0.92614 0.89209 0.82908 0.94121 0.94423 0.76314 0.89177 0.89624 0.86847 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.36 -7.86 10.57 -51.37 -0.54 -8.41 16 3 C 0.48 12.38 7.72 71.24 0.55 12.93 16 4 O -0.53 -18.87 12.86 21.95 0.28 -18.59 16 5 C -0.15 -2.79 6.30 -11.54 -0.07 -2.86 16 6 H 0.18 1.88 8.14 -2.39 -0.02 1.86 16 7 C -0.12 -1.97 9.88 30.61 0.30 -1.67 16 8 C -0.14 -2.98 5.85 -10.78 -0.06 -3.05 16 9 H 0.15 2.50 8.04 -2.39 -0.02 2.48 16 10 C 0.18 6.41 3.43 86.38 0.30 6.71 16 11 N -0.73 -28.90 5.73 -345.25 -1.98 -30.88 16 12 C 0.40 20.23 7.65 132.91 1.02 21.24 16 13 C -0.36 -20.22 9.12 23.01 0.21 -20.01 16 14 C 0.13 7.58 5.60 -21.12 -0.12 7.47 16 15 C -0.49 -28.52 9.12 23.52 0.21 -28.31 16 16 H 0.07 4.06 7.90 -2.91 -0.02 4.03 16 17 C 0.04 2.07 5.20 85.29 0.44 2.51 16 18 N -0.81 -43.46 10.93 21.84 0.24 -43.22 16 19 Si 0.99 39.27 29.59 68.60 2.03 41.30 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 23 C -0.27 -15.22 8.74 22.60 0.20 -15.03 16 24 C 0.12 6.04 11.10 84.26 0.94 6.98 16 25 N -0.63 -32.26 10.36 -194.48 -2.02 -34.28 16 26 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 27 H 0.14 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 29 H 0.09 1.77 8.03 -2.39 -0.02 1.75 16 30 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 1.69 6.71 -2.39 -0.02 1.67 16 32 H 0.04 1.50 7.08 -2.39 -0.02 1.48 16 33 H 0.40 13.57 8.52 -92.71 -0.79 12.78 16 34 H 0.09 5.12 6.71 -2.91 -0.02 5.10 16 35 H 0.29 13.89 8.29 -92.71 -0.77 13.12 16 36 H 0.11 6.47 6.21 -2.91 -0.02 6.45 16 37 H 0.15 6.51 8.06 -2.91 -0.02 6.49 16 Total: -1.00 -74.36 317.90 3.43 -70.92 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.31 Total: 34.50 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 5.11 Total: -11.35 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -3.76 Total: -108.37 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.26 Total: -26.99 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Total: -74.36 3.43 -70.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161040753.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.162 kcal (2) G-P(sol) polarization free energy of solvation -74.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds