Wall clock time and date at job start Mon Mar 30 2020 20:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39715 * 126.27151 * 2 1 4 4 C 1.38609 * 133.27433 * 359.97438 * 3 2 1 5 5 C 1.38073 * 119.91820 * 179.97438 * 4 3 2 6 6 C 1.39022 * 120.10618 * 359.97438 * 5 4 3 7 7 N 1.39899 * 119.92408 * 180.02562 * 6 5 4 8 8 C 1.46510 * 119.99677 * 359.97438 * 7 6 5 9 9 C 1.52993 * 109.46968 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46872 * 180.02562 * 9 8 7 11 11 C 1.50707 * 109.47163 * 180.02562 * 10 9 8 12 12 H 1.08008 * 119.99754 * 359.97438 * 11 10 9 13 13 C 1.37869 * 120.00261 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99780 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00114 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47147 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47150 * 120.00528 * 15 13 11 18 18 H 1.48503 * 109.47249 * 239.99951 * 15 13 11 19 19 C 1.38709 * 120.15940 * 359.79218 * 6 5 4 20 20 C 1.38585 * 119.85904 * 0.44807 * 19 6 5 21 21 O 1.35561 * 132.91591 * 179.84898 * 20 19 6 22 22 C 1.34224 * 109.22923 * 179.71231 * 21 20 19 23 23 O 1.21601 * 125.26904 * 180.02562 * 22 21 20 24 24 H 1.08998 * 109.47217 * 90.00494 * 1 2 3 25 25 H 1.09003 * 109.47145 * 210.00148 * 1 2 3 26 26 H 1.08993 * 109.47215 * 330.00313 * 1 2 3 27 27 H 1.07995 * 120.04374 * 0.02562 * 4 3 2 28 28 H 1.07993 * 119.94766 * 179.97438 * 5 4 3 29 29 H 0.96998 * 120.00525 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47011 * 300.00266 * 8 7 6 31 31 H 1.09001 * 109.47167 * 60.00054 * 8 7 6 32 32 H 1.09002 * 109.47542 * 300.00248 * 9 8 7 33 33 H 1.09001 * 109.47311 * 59.99923 * 9 8 7 34 34 H 1.09005 * 109.47280 * 299.99436 * 10 9 8 35 35 H 1.08995 * 109.47126 * 60.00221 * 10 9 8 36 36 H 0.97006 * 119.99867 * 179.97438 * 14 13 11 37 37 H 1.08000 * 120.07336 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2916 1.1264 0.0000 4 6 2.0401 2.4895 -0.0005 5 6 3.0920 3.3839 0.0002 6 6 4.4023 2.9193 0.0019 7 7 5.4652 3.8289 0.0031 8 6 5.1968 5.2692 0.0021 9 6 6.5214 6.0348 0.0031 10 6 6.2410 7.5389 0.0027 11 6 7.5458 8.2931 0.0031 12 1 8.4814 7.7535 0.0040 13 6 7.5451 9.6718 0.0022 14 7 6.4058 10.3288 0.0006 15 14 9.1623 10.6066 0.0034 16 1 10.2915 9.6422 0.0046 17 1 9.2419 11.4598 -1.2095 18 1 9.2393 11.4612 1.2155 19 6 4.6583 1.5561 0.0072 20 6 3.6045 0.6561 0.0015 21 8 3.5473 -0.6983 0.0019 22 6 2.2624 -1.0865 0.0009 23 8 1.8774 -2.2400 0.0013 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5137 27 1 1.0226 2.8516 -0.0005 28 1 2.8966 4.4460 -0.0005 29 1 6.3799 3.5061 0.0047 30 1 4.6264 5.5318 -0.8888 31 1 4.6237 5.5326 0.8911 32 1 7.0922 5.7722 0.8938 33 1 7.0941 5.7713 -0.8861 34 1 5.6701 7.8019 -0.8879 35 1 5.6686 7.8020 0.8921 36 1 6.4053 11.2989 0.0004 37 1 5.6768 1.1967 0.0081 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430947.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:42 Heat of formation + Delta-G solvation = -25.224213 kcal Electronic energy + Delta-G solvation = -19964.915097 eV Core-core repulsion = 16708.088519 eV Total energy + Delta-G solvation = -3256.826578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.29156 -39.16428 -37.79611 -36.60252 -35.29004 -33.44093 -31.60626 -30.65849 -29.07811 -27.70431 -26.15298 -24.01491 -22.89849 -22.24412 -21.74983 -20.44661 -18.54441 -17.85946 -17.59081 -16.94691 -16.40682 -15.75410 -15.30738 -14.96635 -14.89337 -14.47783 -14.41142 -14.20212 -13.74796 -13.54212 -13.14468 -12.80550 -12.64596 -12.35442 -11.98551 -11.90361 -11.41897 -11.13847 -11.10340 -10.87875 -10.78842 -10.61006 -9.95207 -9.57385 -9.35081 -9.20287 -8.90832 -8.45163 -7.27627 -6.10083 -4.12932 0.96063 1.21840 1.95554 2.33283 2.64457 3.25016 3.33083 3.36424 3.49899 3.57783 4.24054 4.35882 4.38381 4.80402 4.91891 4.95065 5.04871 5.13711 5.22117 5.26447 5.44473 5.59359 5.62887 5.69109 5.86890 5.97573 6.07679 6.12152 6.29664 6.46553 6.54034 6.87259 7.04705 7.26974 7.51347 7.53386 7.64999 7.71235 7.88365 8.29827 8.93773 9.52058 11.01234 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.056559 B = 0.002554 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.938114 B =10959.058413 C =11422.946115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.546 5.546 3 C -0.007 4.007 4 C -0.046 4.046 5 C -0.175 4.175 6 C 0.243 3.757 7 N -0.734 5.734 8 C 0.118 3.882 9 C -0.121 4.121 10 C 0.024 3.976 11 C -0.523 4.523 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.172 4.172 20 C 0.087 3.913 21 O -0.240 6.240 22 C 0.632 3.368 23 O -0.502 6.502 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.133 0.867 28 H 0.142 0.858 29 H 0.402 0.598 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.643 -16.325 0.077 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.280 5.280 3 C -0.104 4.104 4 C -0.067 4.067 5 C -0.198 4.198 6 C 0.135 3.865 7 N -0.361 5.361 8 C -0.005 4.005 9 C -0.159 4.159 10 C -0.013 4.013 11 C -0.561 4.561 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.197 4.197 20 C 0.040 3.960 21 O -0.145 6.145 22 C 0.387 3.613 23 O -0.386 6.386 24 H 0.089 0.911 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.151 0.849 28 H 0.159 0.841 29 H 0.237 0.763 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.859 -16.754 0.077 19.966 hybrid contribution 1.066 0.476 -0.012 1.168 sum -9.793 -16.278 0.065 18.997 Atomic orbital electron populations 1.21725 0.74172 1.04448 1.03316 1.45515 1.07808 1.04850 1.69787 1.18252 0.88616 0.89733 1.13797 1.19784 0.99864 0.87848 0.99180 1.20612 0.89982 1.00369 1.08855 1.17392 0.88850 0.87940 0.92318 1.45114 1.06042 1.05133 1.79797 1.21718 1.00156 0.77592 1.01012 1.21863 0.93988 0.98967 1.01104 1.19033 0.97351 0.87405 0.97547 1.21237 0.92701 0.91292 1.50854 0.92594 1.25020 0.96322 0.97903 0.95190 1.69966 1.25113 1.07609 1.50668 0.86528 0.83857 0.79918 0.77653 1.19738 1.20963 1.20957 1.19143 0.97449 0.89187 1.13901 1.18501 0.93918 0.79923 1.03677 1.84946 1.28010 1.21296 1.80265 1.18468 0.78583 0.85358 0.78847 1.91126 1.74306 1.16364 1.56844 0.91075 0.89462 0.89598 0.84933 0.84065 0.76316 0.92118 0.92113 0.92636 0.92630 0.96300 0.96300 0.92944 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 11.07 59.85 0.66 1.36 16 2 N -0.55 -5.98 3.21 -126.36 -0.41 -6.39 16 3 C -0.01 -0.07 6.85 -83.67 -0.57 -0.65 16 4 C -0.05 -0.43 10.03 -39.51 -0.40 -0.83 16 5 C -0.17 -1.85 9.30 -39.35 -0.37 -2.21 16 6 C 0.24 2.78 6.65 -83.71 -0.56 2.22 16 7 N -0.73 -8.73 5.74 -58.59 -0.34 -9.07 16 8 C 0.12 1.66 4.91 -4.04 -0.02 1.64 16 9 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 10 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -13.99 9.11 -34.44 -0.31 -14.31 16 12 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 15 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.17 -1.94 9.91 -39.28 -0.39 -2.33 16 20 C 0.09 1.08 7.35 -39.00 -0.29 0.79 16 21 O -0.24 -3.33 10.72 -21.98 -0.24 -3.57 16 22 C 0.63 8.76 9.07 54.06 0.49 9.25 16 23 O -0.50 -8.10 17.81 -19.01 -0.34 -8.44 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.56 8.06 -51.93 -0.42 0.15 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.14 1.40 6.71 -52.49 -0.35 1.05 16 29 H 0.40 4.29 8.48 -40.82 -0.35 3.95 16 30 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 31 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 321.73 15.07 4.85 4.85 Total: -1.00 -31.39 321.73 -7.74 -39.13 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -4.87 Total: -1.88 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.13 Total: -5.43 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.01 Total: -40.52 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.57 Total: -12.01 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.39 -7.74 -39.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430947.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.908 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds