Wall clock time and date at job start Mon Mar 30 2020 20:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00455 * 2 1 4 4 C 1.53005 * 109.46757 * 125.00027 * 3 2 1 5 5 H 1.08994 * 109.47258 * 55.00197 * 4 3 2 6 6 N 1.46501 * 109.47211 * 295.00237 * 4 3 2 7 7 C 1.39718 * 120.00043 * 155.00551 * 6 4 3 8 8 C 1.39336 * 120.36402 * 359.97438 * 7 6 4 9 9 N 1.31981 * 121.20720 * 180.02562 * 8 7 6 10 10 C 1.31488 * 122.05855 * 0.02562 * 9 8 7 11 11 C 1.40764 * 120.56789 * 0.02562 * 10 9 8 12 12 C 1.41423 * 120.62071 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00337 * 23.37307 * 12 11 10 14 14 C 1.39938 * 119.99375 * 203.37716 * 12 11 10 15 15 N 1.30822 * 120.00199 * 17.33665 * 14 12 11 16 16 Si 1.86803 * 119.99496 * 197.33476 * 14 12 11 17 17 H 1.48501 * 109.46767 * 90.00190 * 16 14 12 18 18 H 1.48502 * 109.47100 * 209.99870 * 16 14 12 19 19 H 1.48497 * 109.47585 * 330.00024 * 16 14 12 20 20 C 1.38658 * 120.36411 * 179.72740 * 7 6 4 21 21 C 1.50704 * 109.46977 * 175.00337 * 4 3 2 22 22 O 1.20826 * 120.00042 * 119.99363 * 21 4 3 23 23 O 1.34228 * 120.00069 * 300.00318 * 21 4 3 24 24 C 1.45202 * 117.00197 * 179.97438 * 23 21 4 25 25 H 1.07997 * 120.00645 * 179.97438 * 1 2 3 26 26 H 1.08009 * 119.99849 * 359.72522 * 1 2 3 27 27 H 1.08006 * 120.00018 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47188 * 245.00129 * 3 2 1 29 29 H 1.08996 * 109.47004 * 5.00752 * 3 2 1 30 30 H 0.97000 * 120.00123 * 334.99994 * 6 4 3 31 31 H 1.08003 * 119.39408 * 359.97438 * 8 7 6 32 32 H 1.08001 * 119.71328 * 179.97438 * 10 9 8 33 33 H 0.97000 * 119.99783 * 180.02562 * 15 14 12 34 34 H 1.07998 * 120.92486 * 359.97266 * 20 7 6 35 35 H 1.08999 * 109.46911 * 179.97438 * 24 23 21 36 36 H 1.08996 * 109.46678 * 299.99856 * 24 23 21 37 37 H 1.09004 * 109.46823 * 59.99619 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1817 5 1 3.6826 0.4571 1.1404 6 7 2.2786 1.3221 2.4362 7 6 2.8682 0.8298 3.6033 8 6 4.1750 0.3468 3.5826 9 7 4.7481 -0.1224 4.6750 10 6 4.1221 -0.1594 5.8307 11 6 2.7988 0.3071 5.9433 12 6 2.1246 0.2684 7.1859 13 1 2.6892 0.2488 8.1063 14 6 0.7258 0.2554 7.2227 15 7 0.0460 -0.0598 6.1503 16 14 -0.1709 0.6880 8.8034 17 1 -0.4310 2.1496 8.8407 18 1 -1.4607 -0.0459 8.8576 19 1 0.6662 0.3043 9.9684 20 6 2.1611 0.8212 4.7960 21 6 3.8749 2.5823 1.1122 22 8 3.8445 3.3817 2.0177 23 8 4.6565 2.8071 0.0444 24 6 5.4374 4.0312 0.0450 25 1 -0.5401 -0.9352 -0.0004 26 1 -0.5400 0.9354 0.0045 27 1 1.8500 -0.9354 -0.0004 28 1 2.6213 1.4025 -0.9314 29 1 1.3587 2.1316 0.0897 30 1 1.3684 1.6567 2.4566 31 1 4.7289 0.3558 2.6554 32 1 4.6273 -0.5518 6.7009 33 1 -0.9236 -0.0684 6.1758 34 1 1.1483 1.1932 4.8435 35 1 6.0231 4.0890 -0.8724 36 1 4.7678 4.8893 0.1037 37 1 6.1078 4.0340 0.9046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169841216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:59 Heat of formation + Delta-G solvation = -55.811491 kcal Electronic energy + Delta-G solvation = -21137.992564 eV Core-core repulsion = 17879.839623 eV Total energy + Delta-G solvation = -3258.152942 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69281 -40.23580 -38.09791 -37.21936 -35.91086 -34.99483 -32.35601 -31.71033 -29.18833 -28.19122 -27.55212 -25.39223 -23.75835 -22.86399 -21.57886 -20.77827 -19.23791 -18.69112 -18.01381 -17.70364 -17.33801 -17.19903 -16.67898 -16.50184 -15.76659 -15.17583 -14.85805 -14.81561 -14.38545 -14.23956 -13.96649 -13.57539 -13.39205 -13.28459 -13.15131 -12.96071 -12.72337 -12.35789 -12.23838 -12.09529 -11.89165 -11.79307 -11.72402 -11.18429 -11.12899 -10.20678 -10.03902 -9.74197 -8.71331 -8.24864 -6.44856 0.89198 1.09976 1.15438 1.39807 1.44667 1.52926 1.54790 1.75103 2.19965 2.56563 2.77013 3.64247 3.76559 3.86507 3.91339 4.18142 4.30130 4.31219 4.33403 4.39441 4.59123 4.65977 4.69268 4.78812 4.90721 4.94530 5.10829 5.15180 5.27319 5.32899 5.63979 5.76748 5.80230 5.89326 5.98685 6.26765 6.62538 6.69050 6.80171 6.81344 6.96738 7.77419 8.27110 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.005186 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.873563 B = 5397.975182 C = 6117.734325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.155 4.155 3 C -0.081 4.081 4 C 0.174 3.826 5 H 0.121 0.879 6 N -0.715 5.715 7 C 0.191 3.809 8 C -0.107 4.107 9 N -0.453 5.453 10 C -0.078 4.078 11 C 0.072 3.928 12 C -0.482 4.482 13 H 0.084 0.916 14 C 0.039 3.961 15 N -0.810 5.810 16 Si 0.985 3.015 17 H -0.264 1.264 18 H -0.265 1.265 19 H -0.257 1.257 20 C -0.228 4.228 21 C 0.438 3.562 22 O -0.531 6.531 23 O -0.357 6.357 24 C 0.027 3.973 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.123 0.877 29 H 0.080 0.920 30 H 0.401 0.599 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.291 0.709 34 H 0.116 0.884 35 H 0.139 0.861 36 H 0.060 0.940 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 4.022 -14.092 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.173 4.173 3 C -0.118 4.118 4 C 0.065 3.935 5 H 0.139 0.861 6 N -0.347 5.347 7 C 0.089 3.911 8 C -0.266 4.266 9 N -0.161 5.161 10 C -0.241 4.241 11 C 0.067 3.933 12 C -0.511 4.511 13 H 0.102 0.898 14 C -0.178 4.178 15 N -0.435 5.435 16 Si 0.806 3.194 17 H -0.189 1.189 18 H -0.189 1.189 19 H -0.180 1.180 20 C -0.258 4.258 21 C 0.280 3.720 22 O -0.419 6.419 23 O -0.272 6.272 24 C -0.066 4.066 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.132 0.868 28 H 0.140 0.860 29 H 0.099 0.901 30 H 0.237 0.763 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.157 0.843 36 H 0.079 0.921 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.235 3.911 -14.147 14.679 hybrid contribution -1.360 0.797 1.063 1.901 sum -1.125 4.708 -13.084 13.951 Atomic orbital electron populations 1.23973 0.95920 1.02511 1.00143 1.22780 0.96207 0.97777 1.00535 1.20939 0.97466 0.97205 0.96188 1.20532 0.93813 0.92599 0.86537 0.86123 1.44103 1.15585 1.70064 1.04915 1.18571 0.92862 0.92654 0.87034 1.21514 0.93283 1.15029 0.96808 1.66783 1.37714 1.12105 0.99471 1.22465 0.95259 1.11520 0.94900 1.18596 0.92532 0.87961 0.94216 1.19845 0.92360 1.45441 0.93482 0.89837 1.26798 0.98233 0.91150 1.01643 1.69861 1.09583 1.32284 1.31740 0.85150 0.77619 0.79200 0.77454 1.18928 1.18934 1.18010 1.21040 1.01560 1.11367 0.91872 1.25363 0.78365 0.88954 0.79358 1.90683 1.64321 1.47791 1.39095 1.86501 1.54047 1.43970 1.42708 1.23521 0.94649 0.83624 1.04803 0.87981 0.87963 0.86840 0.85951 0.90108 0.76344 0.85113 0.85225 0.89846 0.86649 0.84320 0.92124 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.89 14.32 67.79 0.97 -2.91 16 2 C -0.15 -3.29 9.24 25.65 0.24 -3.05 16 3 C -0.08 -1.64 5.16 29.85 0.15 -1.48 16 4 C 0.17 4.99 2.18 44.25 0.10 5.09 16 5 H 0.12 3.39 6.50 -2.39 -0.02 3.38 16 6 N -0.71 -26.35 4.48 -322.31 -1.44 -27.79 16 7 C 0.19 9.06 6.56 38.25 0.25 9.31 16 8 C -0.11 -5.16 10.34 84.93 0.88 -4.28 16 9 N -0.45 -23.87 10.33 -193.05 -1.99 -25.86 16 10 C -0.08 -4.22 10.97 85.36 0.94 -3.28 16 11 C 0.07 4.04 5.59 -21.21 -0.12 3.92 16 12 C -0.48 -26.04 9.08 23.47 0.21 -25.83 16 13 H 0.08 4.32 7.90 -2.91 -0.02 4.30 16 14 C 0.04 1.91 5.18 85.26 0.44 2.36 16 15 N -0.81 -41.13 10.92 21.82 0.24 -40.89 16 16 Si 0.99 37.48 29.59 68.60 2.03 39.51 16 17 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 18 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 19 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 20 C -0.23 -12.20 8.67 23.04 0.20 -12.00 16 21 C 0.44 13.80 7.20 71.24 0.51 14.31 16 22 O -0.53 -21.43 16.11 21.96 0.35 -21.07 16 23 O -0.36 -8.89 10.37 -51.40 -0.53 -9.42 16 24 C 0.03 0.54 10.56 113.37 1.20 1.74 16 25 H 0.10 2.00 8.06 -2.91 -0.02 1.98 16 26 H 0.10 1.91 7.84 -2.91 -0.02 1.89 16 27 H 0.11 2.39 8.06 -2.91 -0.02 2.37 16 28 H 0.12 1.89 7.99 -2.39 -0.02 1.87 16 29 H 0.08 1.58 7.79 -2.39 -0.02 1.56 16 30 H 0.40 14.17 8.62 -92.71 -0.80 13.37 16 31 H 0.13 5.58 6.19 -2.91 -0.02 5.56 16 32 H 0.13 6.60 8.06 -2.91 -0.02 6.57 16 33 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 34 H 0.12 6.31 6.20 -2.91 -0.02 6.29 16 35 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 37 H 0.05 1.12 8.13 -2.38 -0.02 1.10 16 Total: -1.00 -67.89 324.09 4.91 -62.98 By element: Atomic # 1 Polarization: 38.37 SS G_CDS: 0.29 Total: 38.66 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 5.97 Total: -16.12 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -3.20 Total: -94.54 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.18 Total: -30.50 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -67.89 4.91 -62.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169841216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.173 kcal (2) G-P(sol) polarization free energy of solvation -67.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds