Wall clock time and date at job start Mon Mar 30 2020 20:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00252 * 2 1 4 4 C 1.53002 * 109.47035 * 125.00160 * 3 2 1 5 5 H 1.08999 * 109.46888 * 55.00490 * 4 3 2 6 6 N 1.46500 * 109.47142 * 295.00477 * 4 3 2 7 7 C 1.32212 * 119.99642 * 126.91496 * 6 4 3 8 8 C 1.46913 * 120.83680 * 6.18273 * 7 6 4 9 9 C 1.34377 * 119.37222 * 179.97438 * 8 7 6 10 10 N 1.36423 * 121.21913 * 359.97438 * 9 8 7 11 11 H 0.96998 * 119.09165 * 180.02562 * 10 9 8 12 12 C 1.37776 * 121.82296 * 0.02941 * 10 9 8 13 13 C 1.40174 * 119.74275 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99360 * 202.45219 * 13 12 10 15 15 C 1.40346 * 120.00519 * 22.44614 * 13 12 10 16 16 N 1.30587 * 119.99677 * 17.39316 * 15 13 12 17 17 Si 1.86803 * 120.00322 * 197.39187 * 15 13 12 18 18 H 1.48499 * 109.46953 * 59.99953 * 17 15 13 19 19 H 1.48494 * 109.47315 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46703 * 300.00075 * 17 15 13 21 21 C 1.39065 * 120.50513 * 359.69155 * 12 10 9 22 22 C 1.50692 * 109.46935 * 175.00144 * 4 3 2 23 23 O 1.20830 * 120.00016 * 120.00461 * 22 4 3 24 24 O 1.34234 * 120.00603 * 300.00298 * 22 4 3 25 25 C 1.45195 * 117.00462 * 180.02562 * 24 22 4 26 26 H 1.07999 * 120.00067 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.99946 * 359.71514 * 1 2 3 28 28 H 1.08003 * 119.99783 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47379 * 245.01097 * 3 2 1 30 30 H 1.09005 * 109.46561 * 5.00956 * 3 2 1 31 31 H 1.08005 * 120.31664 * 359.97438 * 8 7 6 32 32 H 1.07998 * 119.39335 * 180.02562 * 9 8 7 33 33 H 0.97005 * 119.99559 * 179.97438 * 16 15 13 34 34 H 1.08007 * 120.62760 * 180.28774 * 21 12 10 35 35 H 1.09008 * 109.46748 * 300.00276 * 25 24 22 36 36 H 1.09007 * 109.47149 * 59.99621 * 25 24 22 37 37 H 1.08999 * 109.47119 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 1 3.6827 0.4572 1.1402 6 7 2.2787 1.3221 2.4362 7 6 2.5469 0.4170 3.3619 8 6 3.6853 -0.4993 3.2117 9 6 3.9313 -1.4076 4.1710 10 7 3.1438 -1.4940 5.2816 11 1 3.3497 -2.1611 5.9551 12 6 2.0639 -0.6601 5.4732 13 6 1.2843 -0.7867 6.6312 14 1 0.2675 -0.4228 6.6400 15 6 1.8250 -1.3864 7.7792 16 7 3.1187 -1.5173 7.8997 17 14 0.6941 -1.9974 9.1347 18 1 -0.2212 -3.0307 8.5874 19 1 1.5066 -2.5851 10.2299 20 1 -0.1021 -0.8613 9.6645 21 6 1.7457 0.3108 4.5298 22 6 3.8748 2.5823 1.1121 23 8 3.8446 3.3817 2.0176 24 8 4.6564 2.8072 0.0442 25 6 5.4381 4.0308 0.0453 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0047 28 1 1.8500 -0.9354 -0.0004 29 1 2.6212 1.4027 -0.9314 30 1 1.3586 2.1316 0.0897 31 1 4.3186 -0.4435 2.3386 32 1 4.7684 -2.0811 4.0612 33 1 3.4924 -1.9314 8.6933 34 1 0.9024 0.9686 4.6802 35 1 4.7690 4.8893 0.1047 36 1 6.1087 4.0328 0.9047 37 1 6.0230 4.0891 -0.8726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169843863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:04 Heat of formation + Delta-G solvation = -28.424993 kcal Electronic energy + Delta-G solvation = -20865.276703 eV Core-core repulsion = 17608.311329 eV Total energy + Delta-G solvation = -3256.965374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.86308 -38.62358 -36.26517 -35.48327 -34.21946 -33.07143 -30.78520 -30.26222 -27.85072 -27.07788 -25.98267 -23.69220 -21.68439 -21.13776 -19.63964 -19.25333 -18.11709 -16.95182 -16.69787 -16.18229 -15.90160 -15.39753 -15.07234 -14.58634 -14.21876 -13.84395 -13.37573 -13.00749 -12.88842 -12.77114 -12.56585 -12.01768 -11.95410 -11.68228 -11.59261 -11.20083 -11.02314 -10.89922 -10.70758 -10.59639 -10.38847 -10.31817 -9.99471 -9.73376 -9.37168 -8.80564 -8.30391 -7.61306 -7.34245 -6.07884 -4.84047 2.53989 2.61597 2.70271 2.85417 2.88250 2.95590 3.04928 3.39593 3.61431 4.23424 4.56310 5.19615 5.27112 5.31695 5.37458 5.47348 5.53625 5.55839 5.69380 5.76404 5.92569 6.05662 6.25336 6.32458 6.35166 6.55598 6.64508 6.71166 6.80558 6.88074 7.09025 7.27100 7.32624 7.57430 7.69837 7.93237 8.15094 8.23237 8.45948 8.73370 8.85567 9.61161 9.65472 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.004404 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.999723 B = 6356.041363 C = 6935.696308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 C -0.072 4.072 4 C 0.107 3.893 5 H 0.068 0.932 6 N -0.641 5.641 7 C 0.295 3.705 8 C -0.308 4.308 9 C 0.131 3.869 10 N -0.600 5.600 11 H 0.414 0.586 12 C 0.331 3.669 13 C -0.464 4.464 14 H 0.104 0.896 15 C 0.077 3.923 16 N -0.811 5.811 17 Si 0.925 3.075 18 H -0.259 1.259 19 H -0.276 1.276 20 H -0.259 1.259 21 C -0.350 4.350 22 C 0.451 3.549 23 O -0.491 6.491 24 O -0.373 6.373 25 C 0.035 3.965 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.294 0.706 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.626 -2.482 -7.517 8.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.149 4.149 3 C -0.110 4.110 4 C -0.007 4.007 5 H 0.086 0.914 6 N -0.371 5.371 7 C 0.135 3.865 8 C -0.338 4.338 9 C 0.001 3.999 10 N -0.210 5.210 11 H 0.254 0.746 12 C 0.222 3.778 13 C -0.497 4.497 14 H 0.122 0.878 15 C -0.142 4.142 16 N -0.439 5.439 17 Si 0.748 3.252 18 H -0.183 1.183 19 H -0.201 1.201 20 H -0.183 1.183 21 C -0.378 4.378 22 C 0.292 3.708 23 O -0.375 6.375 24 O -0.290 6.290 25 C -0.060 4.060 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.150 0.850 33 H 0.105 0.895 34 H 0.134 0.866 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.291 -1.507 -7.371 7.865 hybrid contribution 0.803 -0.857 0.907 1.484 sum 3.094 -2.364 -6.464 7.547 Atomic orbital electron populations 1.23644 0.95896 1.01133 1.02199 1.22646 0.95955 0.97573 0.98728 1.20653 0.98002 0.96395 0.95912 1.20978 0.92814 0.90317 0.96548 0.91415 1.73677 1.32777 1.28671 1.01955 1.20270 0.87897 0.86369 0.91922 1.22257 1.05417 1.04470 1.01696 1.21244 0.93724 0.97338 0.87570 1.42110 1.26358 1.33160 1.19375 0.74560 1.17638 0.82141 0.85209 0.92786 1.19514 1.01191 1.34907 0.94043 0.87762 1.26221 0.95615 0.92237 1.00116 1.69333 1.12204 1.32519 1.29806 0.86047 0.80308 0.80207 0.78597 1.18327 1.20075 1.18287 1.20196 1.10322 1.08598 0.98722 1.25048 0.77535 0.89244 0.78933 1.90602 1.62646 1.46377 1.37907 1.86566 1.54805 1.42294 1.45346 1.23102 0.94821 0.85525 1.02523 0.89160 0.88883 0.88124 0.91107 0.91135 0.86738 0.85021 0.89495 0.86635 0.92471 0.92522 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.01 14.32 29.01 0.42 -2.59 16 2 C -0.13 -2.16 9.25 -36.03 -0.33 -2.49 16 3 C -0.07 -1.24 5.30 -27.88 -0.15 -1.39 16 4 C 0.11 2.19 2.68 -69.08 -0.19 2.00 16 5 H 0.07 1.32 5.34 -51.93 -0.28 1.04 16 6 N -0.64 -15.60 9.42 -51.91 -0.49 -16.09 16 7 C 0.29 7.23 6.80 -82.74 -0.56 6.67 16 8 C -0.31 -6.53 9.34 -37.43 -0.35 -6.88 16 9 C 0.13 2.54 11.15 -16.87 -0.19 2.35 16 10 N -0.60 -12.86 4.89 -10.83 -0.05 -12.91 16 11 H 0.41 8.44 6.33 -40.82 -0.26 8.18 16 12 C 0.33 8.01 6.37 -84.16 -0.54 7.47 16 13 C -0.46 -10.87 9.03 -38.06 -0.34 -11.21 16 14 H 0.10 2.38 7.91 -52.48 -0.42 1.96 16 15 C 0.08 1.65 5.18 -17.29 -0.09 1.56 16 16 N -0.81 -17.50 11.12 55.57 0.62 -16.89 16 17 Si 0.93 16.16 29.60 -169.99 -5.03 11.13 16 18 H -0.26 -4.48 7.11 56.52 0.40 -4.08 16 19 H -0.28 -4.69 7.11 56.52 0.40 -4.29 16 20 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 21 C -0.35 -8.92 9.83 -37.82 -0.37 -9.30 16 22 C 0.45 9.37 7.32 36.00 0.26 9.63 16 23 O -0.49 -11.96 16.18 -18.75 -0.30 -12.26 16 24 O -0.37 -6.36 10.37 -39.27 -0.41 -6.77 16 25 C 0.03 0.46 10.56 101.05 1.07 1.53 16 26 H 0.09 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.09 1.44 7.84 -52.49 -0.41 1.03 16 28 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 29 H 0.07 1.06 7.99 -51.93 -0.42 0.64 16 30 H 0.07 1.28 7.79 -51.93 -0.40 0.88 16 31 H 0.11 2.19 6.01 -52.48 -0.32 1.88 16 32 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.29 5.72 8.29 -40.82 -0.34 5.38 16 34 H 0.12 3.04 8.06 -52.48 -0.42 2.62 16 35 H 0.06 0.76 8.13 -51.92 -0.42 0.33 16 36 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 324.16 15.07 4.89 4.89 Total: -1.00 -29.13 324.16 -6.73 -35.86 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -4.59 Total: 15.69 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.36 Total: -2.65 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.08 Total: -45.89 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.71 Total: -19.03 kcal Atomic # 14 Polarization: 16.16 SS G_CDS: -5.03 Total: 11.13 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.13 -6.73 -35.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169843863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.438 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds