Wall clock time and date at job start Mon Mar 30 2020 20:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00252 * 2 1 4 4 C 1.53002 * 109.47035 * 125.00160 * 3 2 1 5 5 H 1.08999 * 109.46888 * 55.00490 * 4 3 2 6 6 N 1.46500 * 109.47142 * 295.00477 * 4 3 2 7 7 C 1.32212 * 119.99642 * 126.91496 * 6 4 3 8 8 C 1.46913 * 120.83680 * 6.18273 * 7 6 4 9 9 C 1.34377 * 119.37222 * 179.97438 * 8 7 6 10 10 N 1.36423 * 121.21913 * 359.97438 * 9 8 7 11 11 H 0.96998 * 119.09165 * 180.02562 * 10 9 8 12 12 C 1.37776 * 121.82296 * 0.02941 * 10 9 8 13 13 C 1.40174 * 119.74275 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99360 * 202.45219 * 13 12 10 15 15 C 1.40346 * 120.00519 * 22.44614 * 13 12 10 16 16 N 1.30587 * 119.99677 * 17.39316 * 15 13 12 17 17 Si 1.86803 * 120.00322 * 197.39187 * 15 13 12 18 18 H 1.48499 * 109.46953 * 59.99953 * 17 15 13 19 19 H 1.48494 * 109.47315 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46703 * 300.00075 * 17 15 13 21 21 C 1.39065 * 120.50513 * 359.69155 * 12 10 9 22 22 C 1.50692 * 109.46935 * 175.00144 * 4 3 2 23 23 O 1.20830 * 120.00016 * 120.00461 * 22 4 3 24 24 O 1.34234 * 120.00603 * 300.00298 * 22 4 3 25 25 C 1.45195 * 117.00462 * 180.02562 * 24 22 4 26 26 H 1.07999 * 120.00067 * 180.02562 * 1 2 3 27 27 H 1.08001 * 119.99946 * 359.71514 * 1 2 3 28 28 H 1.08003 * 119.99783 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47379 * 245.01097 * 3 2 1 30 30 H 1.09005 * 109.46561 * 5.00956 * 3 2 1 31 31 H 1.08005 * 120.31664 * 359.97438 * 8 7 6 32 32 H 1.07998 * 119.39335 * 180.02562 * 9 8 7 33 33 H 0.97005 * 119.99559 * 179.97438 * 16 15 13 34 34 H 1.08007 * 120.62760 * 180.28774 * 21 12 10 35 35 H 1.09008 * 109.46748 * 300.00276 * 25 24 22 36 36 H 1.09007 * 109.47149 * 59.99621 * 25 24 22 37 37 H 1.08999 * 109.47119 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 1 3.6827 0.4572 1.1402 6 7 2.2787 1.3221 2.4362 7 6 2.5469 0.4170 3.3619 8 6 3.6853 -0.4993 3.2117 9 6 3.9313 -1.4076 4.1710 10 7 3.1438 -1.4940 5.2816 11 1 3.3497 -2.1611 5.9551 12 6 2.0639 -0.6601 5.4732 13 6 1.2843 -0.7867 6.6312 14 1 0.2675 -0.4228 6.6400 15 6 1.8250 -1.3864 7.7792 16 7 3.1187 -1.5173 7.8997 17 14 0.6941 -1.9974 9.1347 18 1 -0.2212 -3.0307 8.5874 19 1 1.5066 -2.5851 10.2299 20 1 -0.1021 -0.8613 9.6645 21 6 1.7457 0.3108 4.5298 22 6 3.8748 2.5823 1.1121 23 8 3.8446 3.3817 2.0176 24 8 4.6564 2.8072 0.0442 25 6 5.4381 4.0308 0.0453 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0047 28 1 1.8500 -0.9354 -0.0004 29 1 2.6212 1.4027 -0.9314 30 1 1.3586 2.1316 0.0897 31 1 4.3186 -0.4435 2.3386 32 1 4.7684 -2.0811 4.0612 33 1 3.4924 -1.9314 8.6933 34 1 0.9024 0.9686 4.6802 35 1 4.7690 4.8893 0.1047 36 1 6.1087 4.0328 0.9047 37 1 6.0230 4.0891 -0.8726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169843863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:04 Heat of formation + Delta-G solvation = -46.142266 kcal Electronic energy + Delta-G solvation = -20866.044982 eV Core-core repulsion = 17608.311329 eV Total energy + Delta-G solvation = -3257.733653 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.42785 -40.30982 -37.77136 -37.07403 -35.84031 -34.66005 -32.48377 -31.81053 -29.39418 -28.40008 -27.67153 -25.17445 -23.35463 -22.77830 -21.17189 -20.63255 -19.81824 -18.51749 -18.41241 -17.71144 -17.37757 -16.93682 -16.58446 -16.19925 -15.57763 -15.43236 -14.76521 -14.53709 -14.49574 -14.28962 -13.95729 -13.56465 -13.35759 -13.20547 -12.95455 -12.81239 -12.66651 -12.42227 -12.18076 -12.05656 -11.90073 -11.77752 -11.67101 -11.33206 -11.01777 -10.11322 -10.01651 -9.32532 -8.99981 -7.81328 -6.67411 0.91289 1.00097 1.21176 1.41830 1.51752 1.53938 1.60404 1.95484 2.15665 2.56834 2.90595 3.48593 3.86659 3.95585 4.10809 4.21396 4.28358 4.31551 4.33668 4.44381 4.57971 4.68976 4.70329 4.87965 4.92447 5.01585 5.03959 5.13099 5.18744 5.37664 5.61136 5.76626 5.80470 5.96331 6.00451 6.07596 6.39861 6.48861 6.88442 6.97983 7.16769 7.88807 8.01515 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.004404 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.999723 B = 6356.041363 C = 6935.696308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C -0.064 4.064 4 C 0.102 3.898 5 H 0.081 0.919 6 N -0.675 5.675 7 C 0.278 3.722 8 C -0.327 4.327 9 C 0.144 3.856 10 N -0.600 5.600 11 H 0.419 0.581 12 C 0.322 3.678 13 C -0.493 4.493 14 H 0.096 0.904 15 C 0.051 3.949 16 N -0.821 5.821 17 Si 0.995 3.005 18 H -0.254 1.254 19 H -0.260 1.260 20 H -0.266 1.266 21 C -0.396 4.396 22 C 0.456 3.544 23 O -0.538 6.538 24 O -0.364 6.364 25 C 0.027 3.973 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.135 0.865 32 H 0.187 0.813 33 H 0.307 0.693 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.982 -4.286 -7.679 9.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.162 4.162 3 C -0.102 4.102 4 C -0.012 4.012 5 H 0.098 0.902 6 N -0.405 5.405 7 C 0.118 3.882 8 C -0.356 4.356 9 C 0.015 3.985 10 N -0.211 5.211 11 H 0.260 0.740 12 C 0.213 3.787 13 C -0.524 4.524 14 H 0.114 0.886 15 C -0.168 4.168 16 N -0.447 5.447 17 Si 0.815 3.185 18 H -0.178 1.178 19 H -0.184 1.184 20 H -0.190 1.190 21 C -0.425 4.425 22 C 0.299 3.701 23 O -0.426 6.426 24 O -0.280 6.280 25 C -0.067 4.067 26 H 0.125 0.875 27 H 0.108 0.892 28 H 0.130 0.870 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.204 0.796 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.683 -3.313 -7.582 9.057 hybrid contribution 0.454 -0.236 0.945 1.074 sum 4.136 -3.549 -6.638 8.589 Atomic orbital electron populations 1.23823 0.95929 1.01853 1.01241 1.22729 0.96284 0.97568 0.99572 1.20613 0.97398 0.96409 0.95762 1.21111 0.93536 0.90629 0.95899 0.90204 1.73535 1.34490 1.29048 1.03393 1.20411 0.88926 0.87340 0.91519 1.22351 1.05082 1.04799 1.03385 1.21954 0.93861 0.96961 0.85766 1.42115 1.26004 1.32721 1.20250 0.73967 1.17711 0.83067 0.85245 0.92702 1.19730 1.01195 1.36358 0.95165 0.88584 1.26933 0.96997 0.91352 1.01476 1.69313 1.13221 1.31303 1.30904 0.85013 0.78330 0.79322 0.75827 1.17823 1.18407 1.19005 1.20113 1.11175 1.10194 1.01037 1.25069 0.77356 0.88750 0.78900 1.90583 1.64319 1.47940 1.39752 1.86528 1.54233 1.43923 1.43298 1.23502 0.94560 0.83794 1.04820 0.87460 0.89240 0.87008 0.88379 0.92743 0.84708 0.79596 0.88075 0.89744 0.92668 0.92924 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.95 14.32 67.78 0.97 -4.98 16 2 C -0.14 -4.64 9.25 25.64 0.24 -4.40 16 3 C -0.06 -2.19 5.30 29.85 0.16 -2.03 16 4 C 0.10 4.16 2.68 44.24 0.12 4.28 16 5 H 0.08 3.04 5.34 -2.39 -0.01 3.03 16 6 N -0.68 -34.04 9.42 -318.15 -3.00 -37.04 16 7 C 0.28 14.09 6.80 42.30 0.29 14.38 16 8 C -0.33 -13.63 9.34 23.66 0.22 -13.40 16 9 C 0.14 5.30 11.15 83.10 0.93 6.23 16 10 N -0.60 -25.35 4.89 -188.19 -0.92 -26.27 16 11 H 0.42 16.51 6.33 -92.71 -0.59 15.92 16 12 C 0.32 16.05 6.37 38.88 0.25 16.29 16 13 C -0.49 -23.66 9.03 23.25 0.21 -23.45 16 14 H 0.10 4.61 7.91 -2.91 -0.02 4.59 16 15 C 0.05 2.13 5.18 85.39 0.44 2.57 16 16 N -0.82 -34.22 11.12 21.89 0.24 -33.97 16 17 Si 1.00 31.96 29.60 68.60 2.03 33.99 16 18 H -0.25 -7.97 7.11 99.48 0.71 -7.26 16 19 H -0.26 -7.68 7.11 99.48 0.71 -6.97 16 20 H -0.27 -8.80 7.11 99.48 0.71 -8.09 16 21 C -0.40 -21.45 9.83 23.41 0.23 -21.22 16 22 C 0.46 18.97 7.32 71.23 0.52 19.49 16 23 O -0.54 -26.88 16.18 21.95 0.36 -26.53 16 24 O -0.36 -11.86 10.37 -51.46 -0.53 -12.40 16 25 C 0.03 0.66 10.56 113.37 1.20 1.85 16 26 H 0.11 2.91 8.06 -2.91 -0.02 2.89 16 27 H 0.09 2.80 7.84 -2.91 -0.02 2.78 16 28 H 0.11 3.34 8.06 -2.91 -0.02 3.32 16 29 H 0.10 2.76 7.99 -2.39 -0.02 2.74 16 30 H 0.05 2.01 7.79 -2.38 -0.02 1.99 16 31 H 0.14 4.94 6.01 -2.91 -0.02 4.92 16 32 H 0.19 4.72 8.06 -2.91 -0.02 4.69 16 33 H 0.31 11.25 8.29 -92.70 -0.77 10.48 16 34 H 0.08 4.89 8.06 -2.91 -0.02 4.86 16 35 H 0.05 1.40 8.13 -2.38 -0.02 1.38 16 36 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -66.31 324.16 4.45 -61.86 By element: Atomic # 1 Polarization: 44.25 SS G_CDS: 0.50 Total: 44.74 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.77 Total: -4.39 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -3.67 Total: -97.28 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.18 Total: -38.92 kcal Atomic # 14 Polarization: 31.96 SS G_CDS: 2.03 Total: 33.99 kcal Total: -66.31 4.45 -61.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169843863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.719 kcal (2) G-P(sol) polarization free energy of solvation -66.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds