Wall clock time and date at job start Mon Mar 30 2020 20:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42104 * 110.53777 * 2 1 4 4 O 1.42100 * 110.54585 * 223.24877 * 2 1 3 5 5 N 1.65595 * 104.44904 * 111.61998 * 2 1 3 6 6 C 1.46500 * 119.99950 * 65.00636 * 5 2 1 7 7 C 1.52996 * 109.47610 * 164.99623 * 6 5 2 8 8 H 1.08999 * 110.64440 * 54.29802 * 7 6 5 9 9 C 1.54600 * 110.72523 * 291.14804 * 7 6 5 10 10 C 1.53995 * 105.13716 * 219.68111 * 9 7 6 11 11 N 1.47895 * 107.06089 * 358.77438 * 10 9 7 12 12 C 1.46903 * 110.99888 * 145.84051 * 11 10 9 13 13 C 1.53004 * 109.46873 * 184.29051 * 12 11 10 14 14 C 1.50703 * 109.46940 * 185.14420 * 13 12 11 15 15 H 1.08002 * 119.99994 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99894 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00324 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99696 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47597 * 59.99969 * 18 16 14 20 20 H 1.48501 * 109.46983 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46992 * 299.99654 * 18 16 14 22 22 C 1.48735 * 105.94443 * 25.20249 * 11 10 9 23 23 H 1.08995 * 109.47346 * 308.37564 * 1 2 3 24 24 H 1.08999 * 109.46935 * 68.38211 * 1 2 3 25 25 H 1.08998 * 109.46551 * 188.37088 * 1 2 3 26 26 H 0.96995 * 120.00713 * 245.00019 * 5 2 1 27 27 H 1.09004 * 109.47205 * 44.99115 * 6 5 2 28 28 H 1.09007 * 109.47057 * 285.00146 * 6 5 2 29 29 H 1.08999 * 110.30647 * 338.60088 * 9 7 6 30 30 H 1.08992 * 110.30717 * 100.66513 * 9 7 6 31 31 H 1.09001 * 109.91222 * 118.13090 * 10 9 7 32 32 H 1.09001 * 109.91285 * 239.21717 * 10 9 7 33 33 H 1.08997 * 109.47662 * 304.29388 * 12 11 10 34 34 H 1.09004 * 109.47119 * 64.29449 * 12 11 10 35 35 H 1.09000 * 109.47186 * 305.13565 * 13 12 11 36 36 H 1.08995 * 109.46947 * 65.14201 * 13 12 11 37 37 H 0.96999 * 120.00726 * 180.02562 * 17 16 14 38 38 H 1.08993 * 110.83696 * 202.57692 * 22 11 10 39 39 H 1.08998 * 110.58740 * 79.38400 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5908 1.4908 6 6 1.8909 -1.9705 1.8508 7 6 2.6876 -2.3829 3.0902 8 1 2.5303 -1.6728 3.9020 9 6 4.1920 -2.5081 2.7568 10 6 4.6735 -3.7493 3.5308 11 7 3.5105 -4.2712 4.2807 12 6 3.5552 -5.7369 4.3683 13 6 2.2862 -6.2457 5.0551 14 6 2.3880 -7.7354 5.2587 15 1 3.2695 -8.2663 4.9306 16 6 1.3555 -8.4208 5.8628 17 7 0.2819 -7.7746 6.2618 18 14 1.4815 -10.2675 6.1145 19 1 2.6601 -10.5720 6.9649 20 1 0.2493 -10.7616 6.7801 21 1 1.6348 -10.9372 4.7979 22 6 2.3063 -3.8173 3.5348 23 1 -0.3634 0.6379 0.8056 24 1 -0.3633 0.3786 -0.9554 25 1 -0.3632 -1.0167 0.1496 26 1 2.6920 -0.0236 2.1256 27 1 2.1394 -2.6333 1.0219 28 1 0.8243 -2.0405 2.0646 29 1 4.3313 -2.6528 1.6854 30 1 4.7287 -1.6203 3.0909 31 1 5.0349 -4.5048 2.8331 32 1 5.4696 -3.4705 4.2212 33 1 3.6198 -6.1591 3.3655 34 1 4.4279 -6.0398 4.9469 35 1 2.1738 -5.7539 6.0213 36 1 1.4209 -6.0226 4.4309 37 1 -0.4444 -8.2567 6.6871 38 1 1.4317 -3.7988 4.1849 39 1 2.1295 -4.4545 2.6683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175955051.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:06 Heat of formation + Delta-G solvation = -78.746290 kcal Electronic energy + Delta-G solvation = -19587.899013 eV Core-core repulsion = 16464.195495 eV Total energy + Delta-G solvation = -3123.703518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.99376 -37.34809 -36.21519 -35.69268 -33.44827 -31.73219 -29.80278 -29.46873 -28.23090 -25.27558 -23.97618 -21.53373 -20.28983 -19.96621 -19.46373 -17.80052 -16.79214 -16.47287 -16.36592 -15.76863 -15.11672 -14.62963 -14.44789 -14.32562 -13.63644 -13.51991 -13.47688 -13.30115 -12.66957 -12.54023 -12.35535 -12.23647 -12.04705 -11.93137 -11.50740 -11.36441 -11.07674 -11.00879 -10.88382 -10.70832 -10.56854 -10.42937 -9.91758 -9.68010 -9.36374 -9.15664 -8.36409 -7.84453 -6.01683 -4.03994 -0.00695 2.44930 3.32496 3.36786 3.39352 3.52357 3.91244 4.32810 4.40789 4.47322 4.61985 4.72572 4.80639 4.87794 5.17744 5.31116 5.34455 5.35413 5.41675 5.52776 5.70354 5.85940 5.97772 5.99971 6.14392 6.19640 6.34535 6.42232 6.45650 6.72400 6.92144 7.41224 7.46355 7.71048 7.86164 8.04502 8.41217 9.02659 9.59810 11.09686 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.003211 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.890682 B = 8717.098776 C = 9183.846706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.616 3.384 3 O -0.964 6.964 4 O -0.957 6.957 5 N -1.117 6.117 6 C 0.121 3.879 7 C -0.099 4.099 8 H 0.089 0.911 9 C -0.125 4.125 10 C 0.033 3.967 11 N -0.518 5.518 12 C 0.054 3.946 13 C 0.027 3.973 14 C -0.523 4.523 15 H 0.053 0.947 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.048 3.952 23 H 0.129 0.871 24 H 0.126 0.874 25 H 0.129 0.871 26 H 0.418 0.582 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.021 0.979 34 H 0.063 0.937 35 H 0.025 0.975 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.088 0.912 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 16.509 -10.724 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.708 3.292 3 O -0.954 6.954 4 O -0.947 6.947 5 N -0.877 5.877 6 C -0.006 4.006 7 C -0.120 4.120 8 H 0.107 0.893 9 C -0.163 4.163 10 C -0.096 4.096 11 N -0.242 5.242 12 C -0.073 4.073 13 C -0.011 4.011 14 C -0.562 4.562 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.081 4.081 23 H 0.148 0.852 24 H 0.145 0.855 25 H 0.148 0.852 26 H 0.253 0.747 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.149 16.797 -10.918 20.067 hybrid contribution -0.496 -1.340 -0.014 1.429 sum 0.653 15.457 -10.932 18.944 Atomic orbital electron populations 1.30530 1.28578 1.11832 1.11448 1.04626 0.77516 0.73726 0.73348 1.93614 1.78054 1.37892 1.85875 1.93625 1.76932 1.61742 1.62391 1.55514 1.74194 1.21564 1.36432 1.21415 0.99262 0.81192 0.98717 1.22303 0.94861 0.98580 0.96222 0.89254 1.22471 0.95244 0.98382 1.00207 1.22853 0.95175 0.95668 0.95858 1.64848 1.00694 1.12840 1.45821 1.22517 1.02236 0.83841 0.98755 1.19103 0.90667 0.95223 0.96070 1.21160 1.02905 0.93062 1.39045 0.92827 1.24982 0.95369 0.98346 0.95556 1.69946 1.06871 1.35839 1.40661 0.86653 0.77364 0.85571 0.78368 1.20213 1.21278 1.20289 1.23178 0.95457 0.92412 0.97034 0.85233 0.85502 0.85221 0.74713 0.90001 0.91369 0.91339 0.91371 0.94176 0.90958 0.96092 0.91836 0.95650 0.96607 0.92944 0.89344 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.30 10.89 101.05 1.10 -2.20 16 2 S 2.62 21.26 6.10 -107.50 -0.66 20.61 16 3 O -0.96 -10.95 18.08 -57.54 -1.04 -11.99 16 4 O -0.96 -11.61 17.50 -57.54 -1.01 -12.62 16 5 N -1.12 -8.54 5.75 -10.61 -0.06 -8.60 16 6 C 0.12 1.09 5.47 -4.04 -0.02 1.06 16 7 C -0.10 -1.12 3.10 -88.76 -0.28 -1.39 16 8 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 9 C -0.12 -1.45 6.38 -25.37 -0.16 -1.62 16 10 C 0.03 0.47 6.70 -2.76 -0.02 0.45 16 11 N -0.52 -9.13 5.35 -230.28 -1.23 -10.36 16 12 C 0.05 1.12 4.78 -3.82 -0.02 1.11 16 13 C 0.03 0.68 4.65 -27.88 -0.13 0.55 16 14 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.50 13.28 55.43 0.74 -25.76 16 18 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.05 0.74 4.82 -1.78 -0.01 0.73 16 23 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 25 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.42 2.75 8.62 -34.47 -0.30 2.45 16 27 H 0.08 0.80 7.57 -51.93 -0.39 0.40 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.79 7.76 -51.93 -0.40 0.39 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.59 7.67 -51.93 -0.40 0.19 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.02 0.43 7.97 -51.93 -0.41 0.02 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.02 0.42 7.19 -51.93 -0.37 0.04 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.09 1.45 7.79 -51.93 -0.40 1.05 16 39 H 0.05 0.73 7.93 -51.93 -0.41 0.32 16 LS Contribution 330.10 15.07 4.97 4.97 Total: -1.00 -35.33 330.10 -9.69 -45.02 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -6.44 Total: -3.00 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 0.05 Total: -14.74 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.56 Total: -44.72 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -2.05 Total: -24.61 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 21.26 SS G_CDS: -0.66 Total: 20.61 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.33 -9.69 -45.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175955051.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.722 kcal (2) G-P(sol) polarization free energy of solvation -35.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds