Wall clock time and date at job start Mon Mar 30 2020 20:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42104 * 110.53777 * 2 1 4 4 O 1.42100 * 110.54585 * 223.24877 * 2 1 3 5 5 N 1.65595 * 104.44904 * 111.61998 * 2 1 3 6 6 C 1.46500 * 119.99950 * 65.00636 * 5 2 1 7 7 C 1.52996 * 109.47610 * 164.99623 * 6 5 2 8 8 H 1.08999 * 110.64440 * 54.29802 * 7 6 5 9 9 C 1.54600 * 110.72523 * 291.14804 * 7 6 5 10 10 C 1.53995 * 105.13716 * 219.68111 * 9 7 6 11 11 N 1.47895 * 107.06089 * 358.77438 * 10 9 7 12 12 C 1.46903 * 110.99888 * 145.84051 * 11 10 9 13 13 C 1.53004 * 109.46873 * 184.29051 * 12 11 10 14 14 C 1.50703 * 109.46940 * 185.14420 * 13 12 11 15 15 H 1.08002 * 119.99994 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99894 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00324 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99696 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47597 * 59.99969 * 18 16 14 20 20 H 1.48501 * 109.46983 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46992 * 299.99654 * 18 16 14 22 22 C 1.48735 * 105.94443 * 25.20249 * 11 10 9 23 23 H 1.08995 * 109.47346 * 308.37564 * 1 2 3 24 24 H 1.08999 * 109.46935 * 68.38211 * 1 2 3 25 25 H 1.08998 * 109.46551 * 188.37088 * 1 2 3 26 26 H 0.96995 * 120.00713 * 245.00019 * 5 2 1 27 27 H 1.09004 * 109.47205 * 44.99115 * 6 5 2 28 28 H 1.09007 * 109.47057 * 285.00146 * 6 5 2 29 29 H 1.08999 * 110.30647 * 338.60088 * 9 7 6 30 30 H 1.08992 * 110.30717 * 100.66513 * 9 7 6 31 31 H 1.09001 * 109.91222 * 118.13090 * 10 9 7 32 32 H 1.09001 * 109.91285 * 239.21717 * 10 9 7 33 33 H 1.08997 * 109.47662 * 304.29388 * 12 11 10 34 34 H 1.09004 * 109.47119 * 64.29449 * 12 11 10 35 35 H 1.09000 * 109.47186 * 305.13565 * 13 12 11 36 36 H 1.08995 * 109.46947 * 65.14201 * 13 12 11 37 37 H 0.96999 * 120.00726 * 180.02562 * 17 16 14 38 38 H 1.08993 * 110.83696 * 202.57692 * 22 11 10 39 39 H 1.08998 * 110.58740 * 79.38400 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5908 1.4908 6 6 1.8909 -1.9705 1.8508 7 6 2.6876 -2.3829 3.0902 8 1 2.5303 -1.6728 3.9020 9 6 4.1920 -2.5081 2.7568 10 6 4.6735 -3.7493 3.5308 11 7 3.5105 -4.2712 4.2807 12 6 3.5552 -5.7369 4.3683 13 6 2.2862 -6.2457 5.0551 14 6 2.3880 -7.7354 5.2587 15 1 3.2695 -8.2663 4.9306 16 6 1.3555 -8.4208 5.8628 17 7 0.2819 -7.7746 6.2618 18 14 1.4815 -10.2675 6.1145 19 1 2.6601 -10.5720 6.9649 20 1 0.2493 -10.7616 6.7801 21 1 1.6348 -10.9372 4.7979 22 6 2.3063 -3.8173 3.5348 23 1 -0.3634 0.6379 0.8056 24 1 -0.3633 0.3786 -0.9554 25 1 -0.3632 -1.0167 0.1496 26 1 2.6920 -0.0236 2.1256 27 1 2.1394 -2.6333 1.0219 28 1 0.8243 -2.0405 2.0646 29 1 4.3313 -2.6528 1.6854 30 1 4.7287 -1.6203 3.0909 31 1 5.0349 -4.5048 2.8331 32 1 5.4696 -3.4705 4.2212 33 1 3.6198 -6.1591 3.3655 34 1 4.4279 -6.0398 4.9469 35 1 2.1738 -5.7539 6.0213 36 1 1.4209 -6.0226 4.4309 37 1 -0.4444 -8.2567 6.6871 38 1 1.4317 -3.7988 4.1849 39 1 2.1295 -4.4545 2.6683 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175955051.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:06 Heat of formation + Delta-G solvation = -107.582229 kcal Electronic energy + Delta-G solvation = -19589.149433 eV Core-core repulsion = 16464.195495 eV Total energy + Delta-G solvation = -3124.953938 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.16894 -38.12554 -36.99954 -36.70051 -35.28674 -33.27904 -30.74601 -30.22708 -29.73395 -26.65651 -25.47441 -22.99667 -21.48703 -21.24813 -20.25433 -18.64153 -18.37530 -17.54759 -17.07530 -16.91050 -16.49176 -16.13976 -15.71826 -15.38563 -14.80733 -14.61532 -14.25147 -14.00250 -13.89429 -13.65075 -13.57479 -13.29298 -13.16940 -13.09323 -12.98955 -12.76661 -12.50556 -12.38582 -12.09270 -11.95621 -11.77461 -11.74953 -11.47866 -11.28713 -11.21226 -10.54025 -10.32086 -9.26581 -8.19394 -6.30385 -0.61676 1.41097 1.43813 1.51693 1.81814 2.41192 2.92805 3.13954 3.16905 3.32639 3.68180 3.74580 3.91113 4.08981 4.23614 4.30866 4.37901 4.44730 4.52057 4.60077 4.63915 4.79177 4.82831 4.90319 4.99717 5.04075 5.08423 5.14564 5.22208 5.40778 5.46261 5.64523 5.80184 6.06572 6.15614 6.19038 6.33188 6.85726 7.38491 8.92268 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.032292 B = 0.003211 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.890682 B = 8717.098776 C = 9183.846706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.627 3.373 3 O -1.000 7.000 4 O -1.003 7.003 5 N -1.112 6.112 6 C 0.122 3.878 7 C -0.087 4.087 8 H 0.101 0.899 9 C -0.119 4.119 10 C 0.030 3.970 11 N -0.533 5.533 12 C 0.070 3.930 13 C 0.037 3.963 14 C -0.548 4.548 15 H 0.057 0.943 16 C 0.004 3.996 17 N -0.929 5.929 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.267 1.267 22 C 0.043 3.957 23 H 0.150 0.850 24 H 0.143 0.857 25 H 0.143 0.857 26 H 0.424 0.576 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.020 0.980 34 H 0.059 0.941 35 H -0.006 1.006 36 H -0.002 1.002 37 H 0.264 0.736 38 H 0.071 0.929 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.516 16.891 -11.183 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.723 3.277 3 O -0.990 6.990 4 O -0.993 6.993 5 N -0.873 5.873 6 C -0.005 4.005 7 C -0.107 4.107 8 H 0.119 0.881 9 C -0.157 4.157 10 C -0.098 4.098 11 N -0.257 5.257 12 C -0.058 4.058 13 C 0.000 4.000 14 C -0.587 4.587 15 H 0.075 0.925 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.788 3.212 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.085 4.085 23 H 0.168 0.832 24 H 0.161 0.839 25 H 0.162 0.838 26 H 0.260 0.740 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.012 0.988 36 H 0.017 0.983 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.896 17.197 -11.383 20.642 hybrid contribution -0.458 -1.419 0.148 1.498 sum 0.437 15.778 -11.235 19.374 Atomic orbital electron populations 1.30350 1.23701 1.13480 1.13372 1.04064 0.78970 0.72139 0.72510 1.93566 1.79947 1.39288 1.86211 1.93568 1.79135 1.62699 1.63901 1.55280 1.74853 1.21014 1.36140 1.21364 1.00276 0.81603 0.97229 1.22207 0.94857 0.95995 0.97639 0.88074 1.22466 0.95507 0.97791 0.99965 1.22944 0.94147 0.96682 0.96015 1.64761 1.02873 1.10379 1.47661 1.22149 0.99442 0.86316 0.97906 1.18909 0.92343 0.94285 0.94496 1.21606 1.03255 0.94481 1.39345 0.92452 1.25910 0.94879 1.03568 0.95039 1.70075 1.07625 1.37909 1.41241 0.85524 0.77665 0.79273 0.78712 1.19332 1.20682 1.19239 1.23185 0.94149 0.95063 0.96151 0.83165 0.83854 0.83821 0.73990 0.90786 0.89003 0.91056 0.89232 0.94516 0.90137 0.96149 0.92262 0.98781 0.98343 0.92706 0.91091 0.94274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.27 10.89 113.37 1.23 -3.04 16 2 S 2.63 39.03 6.10 -56.49 -0.34 38.68 16 3 O -1.00 -21.83 18.08 -127.65 -2.31 -24.13 16 4 O -1.00 -23.81 17.50 -127.65 -2.23 -26.04 16 5 N -1.11 -14.85 5.75 -187.49 -1.08 -15.93 16 6 C 0.12 1.97 5.47 86.38 0.47 2.44 16 7 C -0.09 -1.82 3.10 -9.59 -0.03 -1.85 16 8 H 0.10 1.92 8.14 -2.39 -0.02 1.91 16 9 C -0.12 -2.56 6.38 31.47 0.20 -2.36 16 10 C 0.03 0.83 6.70 86.45 0.58 1.41 16 11 N -0.53 -18.86 5.35 -882.47 -4.72 -23.58 16 12 C 0.07 2.98 4.78 86.30 0.41 3.40 16 13 C 0.04 1.96 4.65 29.85 0.14 2.10 16 14 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 15 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 16 C 0.00 0.25 5.46 84.66 0.46 0.71 16 17 N -0.93 -55.89 13.28 21.44 0.28 -55.61 16 18 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 C 0.04 1.33 4.82 86.61 0.42 1.75 16 23 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.42 4.69 8.62 -96.75 -0.83 3.86 16 27 H 0.07 1.35 7.57 -2.39 -0.02 1.33 16 28 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.07 1.52 7.76 -2.39 -0.02 1.50 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.05 7.67 -2.39 -0.02 1.03 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.02 0.86 7.97 -2.39 -0.02 0.84 16 34 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.00 -0.10 7.19 -2.39 -0.02 -0.12 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.07 2.40 7.79 -2.39 -0.02 2.38 16 39 H 0.04 1.25 7.93 -2.39 -0.02 1.23 16 Total: -1.00 -77.24 330.10 -4.06 -81.30 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 0.19 Total: 5.83 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 4.12 Total: -26.53 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -5.51 Total: -95.12 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -4.54 Total: -50.18 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 39.03 SS G_CDS: -0.34 Total: 38.68 kcal Total: -77.24 -4.06 -81.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175955051.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.287 kcal (2) G-P(sol) polarization free energy of solvation -77.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds