Wall clock time and date at job start Mon Mar 30 2020 20:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 O 1.42104 * 110.54664 * 2 1 4 4 O 1.42103 * 110.54220 * 223.24434 * 2 1 3 5 5 N 1.65608 * 104.45110 * 111.62552 * 2 1 3 6 6 C 1.46499 * 119.99916 * 64.99460 * 5 2 1 7 7 C 1.53002 * 109.46858 * 165.00470 * 6 5 2 8 8 H 1.09002 * 110.62955 * 305.70026 * 7 6 5 9 9 C 1.55137 * 110.85664 * 68.91139 * 7 6 5 10 10 C 1.54906 * 101.65340 * 154.10308 * 9 7 6 11 11 N 1.47840 * 104.79740 * 322.92990 * 10 9 7 12 12 C 1.46900 * 110.99992 * 146.36180 * 11 10 9 13 13 C 1.52997 * 109.47398 * 69.15716 * 12 11 10 14 14 C 1.50696 * 109.47525 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00264 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00356 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99779 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47061 * 90.00603 * 18 16 14 20 20 H 1.48499 * 109.47024 * 210.00395 * 18 16 14 21 21 H 1.48495 * 109.47158 * 330.00177 * 18 16 14 22 22 C 1.47441 * 108.56515 * 24.09695 * 11 10 9 23 23 H 1.09006 * 109.46923 * 308.37802 * 1 2 3 24 24 H 1.09003 * 109.47320 * 68.37638 * 1 2 3 25 25 H 1.08994 * 109.47657 * 188.37652 * 1 2 3 26 26 H 0.97000 * 119.99615 * 245.00093 * 5 2 1 27 27 H 1.08991 * 109.47165 * 45.00400 * 6 5 2 28 28 H 1.09002 * 109.47074 * 285.00524 * 6 5 2 29 29 H 1.09002 * 110.99327 * 272.19931 * 9 7 6 30 30 H 1.08999 * 110.99116 * 36.01394 * 9 7 6 31 31 H 1.09005 * 110.37603 * 204.09846 * 10 9 7 32 32 H 1.09003 * 110.37054 * 81.75849 * 10 9 7 33 33 H 1.09000 * 109.47426 * 189.16128 * 12 11 10 34 34 H 1.09007 * 109.47368 * 309.15820 * 12 11 10 35 35 H 1.09000 * 109.47168 * 300.00570 * 13 12 11 36 36 H 1.09007 * 109.46776 * 59.99742 * 13 12 11 37 37 H 0.96999 * 119.99847 * 179.97438 * 17 16 14 38 38 H 1.09008 * 109.88448 * 239.60068 * 22 11 10 39 39 H 1.08999 * 110.02918 * 118.49222 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9693 -0.9117 5 7 2.2272 -0.5910 1.4908 6 6 1.8906 -1.9706 1.8508 7 6 2.6874 -2.3830 3.0902 8 1 3.7541 -2.2246 2.9313 9 6 2.1987 -1.6100 4.3434 10 6 2.5839 -2.5861 5.4830 11 7 2.3328 -3.9329 4.9275 12 6 3.3009 -4.9066 5.4498 13 6 3.0330 -5.1448 6.9371 14 6 4.0265 -6.1432 7.4730 15 1 4.7740 -6.5659 6.8181 16 6 3.9805 -6.5177 8.7991 17 7 4.8472 -7.3894 9.2667 18 14 2.6871 -5.7870 9.9317 19 1 1.4700 -6.6374 9.9068 20 1 3.2197 -5.7255 11.3166 21 1 2.3436 -4.4173 9.4723 22 6 2.4030 -3.8548 3.4569 23 1 -0.3633 0.6381 0.8057 24 1 -0.3634 0.3787 -0.9554 25 1 -0.3634 -1.0166 0.1497 26 1 2.6920 -0.0237 2.1256 27 1 2.1392 -2.6333 1.0220 28 1 0.8241 -2.0405 2.0647 29 1 2.7255 -0.6614 4.4471 30 1 1.1204 -1.4545 4.3104 31 1 1.9575 -2.4137 6.3583 32 1 3.6369 -2.4720 5.7405 33 1 3.1996 -5.8466 4.9073 34 1 4.3116 -4.5195 5.3201 35 1 3.1343 -4.2048 7.4796 36 1 2.0223 -5.5319 7.0668 37 1 4.8151 -7.6525 10.1998 38 1 1.4533 -4.1682 3.0232 39 1 3.2072 -4.4910 3.0872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175955060.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:09 Heat of formation + Delta-G solvation = -75.628434 kcal Electronic energy + Delta-G solvation = -19490.708169 eV Core-core repulsion = 16367.139852 eV Total energy + Delta-G solvation = -3123.568318 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.19629 -37.44188 -36.30564 -35.82559 -33.43793 -31.82849 -29.90405 -29.35388 -29.16498 -25.27209 -23.95069 -21.49770 -20.55513 -19.93254 -19.61342 -17.90655 -16.98090 -16.84252 -16.62562 -15.67459 -15.30302 -14.65855 -14.38393 -14.09957 -13.97639 -13.65931 -13.60212 -13.25405 -12.93698 -12.67769 -12.44487 -12.35047 -12.32815 -12.29593 -11.63942 -11.43685 -11.30750 -11.14157 -10.94962 -10.85219 -10.72195 -10.10732 -9.84479 -9.75351 -9.69825 -9.21577 -8.53975 -7.90106 -6.05007 -4.03313 -0.10226 2.35220 3.31938 3.38782 3.43358 3.43770 3.81341 4.27539 4.33434 4.44037 4.45545 4.49458 4.56213 4.80480 5.00617 5.14570 5.24220 5.29727 5.32755 5.42553 5.57277 5.64088 5.79023 5.88115 6.01261 6.02326 6.22027 6.24062 6.32938 6.61632 6.75581 7.13813 7.25286 7.51136 7.58728 7.84082 8.52293 8.99060 9.57539 11.08407 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.050960 B = 0.002968 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.321564 B = 9432.551092 C = 9625.967813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.616 3.384 3 O -0.962 6.962 4 O -0.957 6.957 5 N -1.118 6.118 6 C 0.125 3.875 7 C -0.118 4.118 8 H 0.084 0.916 9 C -0.125 4.125 10 C 0.044 3.956 11 N -0.532 5.532 12 C 0.065 3.935 13 C -0.006 4.006 14 C -0.522 4.522 15 H 0.070 0.930 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.265 1.265 22 C 0.048 3.952 23 H 0.129 0.871 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.418 0.582 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.028 0.972 35 H 0.014 0.986 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.384 16.105 -17.257 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.708 3.292 3 O -0.953 6.953 4 O -0.947 6.947 5 N -0.878 5.878 6 C -0.001 4.001 7 C -0.138 4.138 8 H 0.103 0.897 9 C -0.164 4.164 10 C -0.084 4.084 11 N -0.257 5.257 12 C -0.062 4.062 13 C -0.044 4.044 14 C -0.561 4.561 15 H 0.088 0.912 16 C -0.134 4.134 17 N -0.543 5.543 18 Si 0.710 3.290 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.081 4.081 23 H 0.148 0.852 24 H 0.146 0.854 25 H 0.147 0.853 26 H 0.253 0.747 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.032 0.968 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.329 15.959 -17.759 26.015 hybrid contribution -0.260 0.577 1.128 1.293 sum -10.589 16.536 -16.631 25.733 Atomic orbital electron populations 1.30528 1.28566 1.11734 1.11512 1.04638 0.77504 0.73762 0.73305 1.93622 1.77993 1.37851 1.85811 1.93625 1.76944 1.61788 1.62359 1.55543 1.74255 1.21621 1.36424 1.21353 0.99068 0.81262 0.98415 1.22613 1.00377 0.96910 0.93945 0.89733 1.22822 1.01494 0.97989 0.94052 1.23017 1.00103 0.87837 0.97404 1.63684 1.51279 1.06758 1.03931 1.22352 0.91434 0.93821 0.98579 1.19523 0.97319 0.96803 0.90708 1.21096 1.15481 1.23935 0.95562 0.91171 1.25005 0.95684 0.94625 0.98110 1.69916 1.36429 1.32787 1.15195 0.86732 0.82035 0.80433 0.79799 1.20245 1.21524 1.18992 1.22810 1.01456 0.93929 0.89901 0.85229 0.85446 0.85306 0.74682 0.89937 0.91398 0.91154 0.90614 0.90379 0.93321 0.91514 0.95377 0.96758 0.96216 0.92728 0.90688 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.50 10.89 101.05 1.10 -1.40 16 2 S 2.62 18.73 6.10 -107.50 -0.66 18.08 16 3 O -0.96 -10.31 18.08 -57.54 -1.04 -11.35 16 4 O -0.96 -10.60 17.50 -57.54 -1.01 -11.61 16 5 N -1.12 -7.46 5.82 -10.61 -0.06 -7.52 16 6 C 0.13 0.92 5.43 -4.04 -0.02 0.90 16 7 C -0.12 -1.14 3.03 -88.80 -0.27 -1.41 16 8 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 9 C -0.13 -1.25 6.17 -24.59 -0.15 -1.40 16 10 C 0.04 0.63 5.78 -2.30 -0.01 0.62 16 11 N -0.53 -8.58 5.16 -231.25 -1.19 -9.77 16 12 C 0.07 1.29 4.51 -3.83 -0.02 1.27 16 13 C -0.01 -0.14 4.08 -27.89 -0.11 -0.25 16 14 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 15 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 18 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.27 -6.29 6.54 56.52 0.37 -5.93 16 22 C 0.05 0.60 6.45 -2.84 -0.02 0.58 16 23 H 0.13 0.34 8.14 -51.92 -0.42 -0.09 16 24 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 25 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.42 2.50 8.35 -34.47 -0.29 2.22 16 27 H 0.08 0.61 7.69 -51.93 -0.40 0.21 16 28 H 0.07 0.37 8.06 -51.93 -0.42 -0.05 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.69 7.99 -51.93 -0.42 0.27 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.74 7.62 -51.93 -0.40 0.35 16 33 H 0.07 1.32 8.03 -51.93 -0.42 0.91 16 34 H 0.03 0.56 7.85 -51.93 -0.41 0.15 16 35 H 0.01 0.34 6.55 -51.93 -0.34 0.00 16 36 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.07 0.83 7.82 -51.92 -0.41 0.42 16 39 H 0.06 0.73 7.56 -51.93 -0.39 0.34 16 LS Contribution 326.57 15.07 4.92 4.92 Total: -1.00 -36.42 326.57 -9.26 -45.68 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -6.40 Total: -3.94 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 0.06 Total: -14.46 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.48 Total: -44.46 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -2.05 Total: -22.96 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 16 Polarization: 18.73 SS G_CDS: -0.66 Total: 18.08 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.42 -9.26 -45.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175955060.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.949 kcal (2) G-P(sol) polarization free energy of solvation -36.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds