Wall clock time and date at job start Mon Mar 30 2020 20:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 O 1.42104 * 110.54664 * 2 1 4 4 O 1.42103 * 110.54220 * 223.24434 * 2 1 3 5 5 N 1.65608 * 104.45110 * 111.62552 * 2 1 3 6 6 C 1.46499 * 119.99916 * 64.99460 * 5 2 1 7 7 C 1.53002 * 109.46858 * 165.00470 * 6 5 2 8 8 H 1.09002 * 110.62955 * 305.70026 * 7 6 5 9 9 C 1.55137 * 110.85664 * 68.91139 * 7 6 5 10 10 C 1.54906 * 101.65340 * 154.10308 * 9 7 6 11 11 N 1.47840 * 104.79740 * 322.92990 * 10 9 7 12 12 C 1.46900 * 110.99992 * 146.36180 * 11 10 9 13 13 C 1.52997 * 109.47398 * 69.15716 * 12 11 10 14 14 C 1.50696 * 109.47525 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00264 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00356 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99779 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47061 * 90.00603 * 18 16 14 20 20 H 1.48499 * 109.47024 * 210.00395 * 18 16 14 21 21 H 1.48495 * 109.47158 * 330.00177 * 18 16 14 22 22 C 1.47441 * 108.56515 * 24.09695 * 11 10 9 23 23 H 1.09006 * 109.46923 * 308.37802 * 1 2 3 24 24 H 1.09003 * 109.47320 * 68.37638 * 1 2 3 25 25 H 1.08994 * 109.47657 * 188.37652 * 1 2 3 26 26 H 0.97000 * 119.99615 * 245.00093 * 5 2 1 27 27 H 1.08991 * 109.47165 * 45.00400 * 6 5 2 28 28 H 1.09002 * 109.47074 * 285.00524 * 6 5 2 29 29 H 1.09002 * 110.99327 * 272.19931 * 9 7 6 30 30 H 1.08999 * 110.99116 * 36.01394 * 9 7 6 31 31 H 1.09005 * 110.37603 * 204.09846 * 10 9 7 32 32 H 1.09003 * 110.37054 * 81.75849 * 10 9 7 33 33 H 1.09000 * 109.47426 * 189.16128 * 12 11 10 34 34 H 1.09007 * 109.47368 * 309.15820 * 12 11 10 35 35 H 1.09000 * 109.47168 * 300.00570 * 13 12 11 36 36 H 1.09007 * 109.46776 * 59.99742 * 13 12 11 37 37 H 0.96999 * 119.99847 * 179.97438 * 17 16 14 38 38 H 1.09008 * 109.88448 * 239.60068 * 22 11 10 39 39 H 1.08999 * 110.02918 * 118.49222 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9693 -0.9117 5 7 2.2272 -0.5910 1.4908 6 6 1.8906 -1.9706 1.8508 7 6 2.6874 -2.3830 3.0902 8 1 3.7541 -2.2246 2.9313 9 6 2.1987 -1.6100 4.3434 10 6 2.5839 -2.5861 5.4830 11 7 2.3328 -3.9329 4.9275 12 6 3.3009 -4.9066 5.4498 13 6 3.0330 -5.1448 6.9371 14 6 4.0265 -6.1432 7.4730 15 1 4.7740 -6.5659 6.8181 16 6 3.9805 -6.5177 8.7991 17 7 4.8472 -7.3894 9.2667 18 14 2.6871 -5.7870 9.9317 19 1 1.4700 -6.6374 9.9068 20 1 3.2197 -5.7255 11.3166 21 1 2.3436 -4.4173 9.4723 22 6 2.4030 -3.8548 3.4569 23 1 -0.3633 0.6381 0.8057 24 1 -0.3634 0.3787 -0.9554 25 1 -0.3634 -1.0166 0.1497 26 1 2.6920 -0.0237 2.1256 27 1 2.1392 -2.6333 1.0220 28 1 0.8241 -2.0405 2.0647 29 1 2.7255 -0.6614 4.4471 30 1 1.1204 -1.4545 4.3104 31 1 1.9575 -2.4137 6.3583 32 1 3.6369 -2.4720 5.7405 33 1 3.1996 -5.8466 4.9073 34 1 4.3116 -4.5195 5.3201 35 1 3.1343 -4.2048 7.4796 36 1 2.0223 -5.5319 7.0668 37 1 4.8151 -7.6525 10.1998 38 1 1.4533 -4.1682 3.0232 39 1 3.2072 -4.4910 3.0872 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175955060.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:08 Heat of formation + Delta-G solvation = -106.289172 kcal Electronic energy + Delta-G solvation = -19492.037719 eV Core-core repulsion = 16367.139852 eV Total energy + Delta-G solvation = -3124.897867 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.22300 -38.12663 -36.99495 -36.71697 -35.23061 -33.41328 -30.75556 -30.25615 -30.20271 -26.65929 -25.10340 -22.99571 -21.39707 -21.35482 -20.24499 -18.99406 -18.49606 -17.62306 -17.20642 -16.61455 -16.49807 -16.02601 -15.75594 -15.17215 -14.95740 -14.73052 -14.34132 -14.07217 -13.90651 -13.88912 -13.55989 -13.43123 -13.15679 -13.04947 -12.96001 -12.90982 -12.57169 -12.05025 -11.99843 -11.91221 -11.70263 -11.66668 -11.59484 -11.44284 -11.32909 -10.77173 -10.32115 -9.18547 -8.30589 -6.35271 -0.60901 1.36867 1.38201 1.51042 1.83631 2.36410 2.95157 3.05082 3.15400 3.32976 3.64331 3.67669 3.92951 4.09351 4.25869 4.30827 4.36077 4.45223 4.49598 4.55409 4.64122 4.78679 4.89677 4.96318 4.97325 5.02136 5.08121 5.15539 5.18480 5.29965 5.41485 5.48165 5.62077 6.12013 6.14246 6.22553 6.30457 6.72827 7.29891 8.86259 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.050960 B = 0.002968 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.321564 B = 9432.551092 C = 9625.967813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.624 3.376 3 O -1.004 7.004 4 O -1.005 7.005 5 N -1.117 6.117 6 C 0.126 3.874 7 C -0.110 4.110 8 H 0.075 0.925 9 C -0.112 4.112 10 C 0.034 3.966 11 N -0.540 5.540 12 C 0.078 3.922 13 C 0.003 3.997 14 C -0.535 4.535 15 H 0.030 0.970 16 C 0.005 3.995 17 N -0.952 5.952 18 Si 0.955 3.045 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.247 1.247 22 C 0.042 3.958 23 H 0.150 0.850 24 H 0.142 0.858 25 H 0.148 0.852 26 H 0.422 0.578 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.059 0.941 34 H 0.016 0.984 35 H 0.017 0.983 36 H 0.020 0.980 37 H 0.267 0.733 38 H 0.096 0.904 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.519 18.072 -17.633 28.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.721 3.279 3 O -0.995 6.995 4 O -0.995 6.995 5 N -0.877 5.877 6 C 0.000 4.000 7 C -0.131 4.131 8 H 0.094 0.906 9 C -0.150 4.150 10 C -0.094 4.094 11 N -0.264 5.264 12 C -0.050 4.050 13 C -0.035 4.035 14 C -0.574 4.574 15 H 0.048 0.952 16 C -0.192 4.192 17 N -0.592 5.592 18 Si 0.778 3.222 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.171 1.171 22 C -0.086 4.086 23 H 0.168 0.832 24 H 0.161 0.839 25 H 0.167 0.833 26 H 0.257 0.743 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.421 17.940 -18.160 28.840 hybrid contribution 0.735 -0.088 1.195 1.405 sum -12.687 17.853 -16.965 27.703 Atomic orbital electron populations 1.30318 1.23102 1.13733 1.13364 1.04134 0.79198 0.72075 0.72510 1.93565 1.80113 1.39549 1.86230 1.93566 1.79288 1.62691 1.63920 1.55343 1.74936 1.21430 1.36001 1.21378 1.00305 0.81344 0.96964 1.22505 1.00457 0.94967 0.95166 0.90647 1.22797 1.02946 0.97515 0.91732 1.23116 0.99072 0.88147 0.99021 1.63617 1.49454 1.06997 1.06296 1.22017 0.91897 0.94876 0.96246 1.19382 0.95643 0.95250 0.93253 1.21450 1.15652 1.24796 0.95496 0.95177 1.26019 0.98171 0.95004 1.00028 1.70070 1.38681 1.34567 1.15923 0.85584 0.78920 0.80407 0.77258 1.19095 1.20934 1.17069 1.22927 1.02309 0.95881 0.87485 0.83163 0.83932 0.83339 0.74263 0.90192 0.88355 0.89227 0.88623 0.90956 0.95060 0.92262 0.96585 0.96496 0.96154 0.92423 0.88601 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.05 10.89 113.37 1.23 -0.82 16 2 S 2.62 32.90 6.10 -56.49 -0.34 32.56 16 3 O -1.00 -20.65 18.08 -127.65 -2.31 -22.96 16 4 O -1.00 -21.50 17.50 -127.65 -2.23 -23.74 16 5 N -1.12 -12.08 5.82 -187.50 -1.09 -13.17 16 6 C 0.13 1.44 5.43 86.38 0.47 1.91 16 7 C -0.11 -1.88 3.03 -9.61 -0.03 -1.91 16 8 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 9 C -0.11 -1.88 6.17 31.98 0.20 -1.68 16 10 C 0.03 0.92 5.78 86.77 0.50 1.42 16 11 N -0.54 -16.73 5.16 -885.54 -4.57 -21.30 16 12 C 0.08 3.11 4.51 86.30 0.39 3.50 16 13 C 0.00 0.12 4.08 29.85 0.12 0.24 16 14 C -0.54 -31.44 9.66 25.60 0.25 -31.19 16 15 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 16 C 0.00 0.27 5.47 84.65 0.46 0.73 16 17 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 18 Si 0.96 44.76 27.47 68.60 1.88 46.65 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 22 C 0.04 0.97 6.45 86.65 0.56 1.53 16 23 H 0.15 0.00 8.14 -2.39 -0.02 -0.02 16 24 H 0.14 0.16 8.14 -2.39 -0.02 0.15 16 25 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 26 H 0.42 4.07 8.35 -96.74 -0.81 3.26 16 27 H 0.08 0.99 7.69 -2.39 -0.02 0.98 16 28 H 0.10 0.57 8.06 -2.39 -0.02 0.55 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.10 1.28 7.99 -2.39 -0.02 1.26 16 31 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.03 0.94 7.62 -2.39 -0.02 0.92 16 33 H 0.06 2.41 8.03 -2.39 -0.02 2.39 16 34 H 0.02 0.66 7.85 -2.38 -0.02 0.64 16 35 H 0.02 0.79 6.55 -2.39 -0.02 0.78 16 36 H 0.02 0.96 7.57 -2.38 -0.02 0.94 16 37 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.10 1.83 7.82 -2.38 -0.02 1.81 16 39 H 0.05 1.19 7.56 -2.39 -0.02 1.18 16 Total: -1.00 -81.55 326.57 -4.05 -85.60 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 0.16 Total: 2.68 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 4.15 Total: -26.26 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -5.36 Total: -94.53 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -4.54 Total: -46.69 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.65 kcal Atomic # 16 Polarization: 32.90 SS G_CDS: -0.34 Total: 32.56 kcal Total: -81.55 -4.05 -85.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175955060.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.688 kcal (2) G-P(sol) polarization free energy of solvation -81.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds