Wall clock time and date at job start Mon Mar 30 2020 20:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35676 * 116.99932 * 2 1 4 4 C 1.38916 * 119.68300 * 180.02562 * 3 2 1 5 5 C 1.38385 * 119.11289 * 180.02562 * 4 3 2 6 6 C 1.38825 * 118.48152 * 359.97438 * 5 4 3 7 7 C 1.38050 * 119.29337 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.58255 * 180.02562 * 7 6 5 9 9 C 1.50697 * 115.55147 * 314.95337 * 8 7 6 10 10 O 1.21296 * 120.00133 * 99.69636 * 9 8 7 11 11 N 1.34780 * 120.00136 * 279.69150 * 9 8 7 12 12 C 1.46500 * 119.99725 * 5.51807 * 11 9 8 13 13 C 1.37098 * 120.00180 * 185.51556 * 11 9 8 14 14 H 1.08004 * 119.99611 * 5.72185 * 13 11 9 15 15 C 1.38944 * 120.00212 * 185.71812 * 13 11 9 16 16 N 1.31417 * 119.99769 * 354.89923 * 15 13 11 17 17 Si 1.86799 * 120.00434 * 174.62285 * 15 13 11 18 18 H 1.48498 * 109.47135 * 89.99991 * 17 15 13 19 19 H 1.48495 * 109.47280 * 210.00260 * 17 15 13 20 20 H 1.48501 * 109.46859 * 330.00626 * 17 15 13 21 21 C 1.53003 * 117.51979 * 100.65726 * 8 7 6 22 22 C 1.52995 * 60.00323 * 107.47940 * 21 8 7 23 23 N 1.31965 * 120.83045 * 0.27256 * 7 6 5 24 24 H 1.08999 * 109.47394 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47155 * 299.99905 * 1 2 3 26 26 H 1.09002 * 109.47469 * 59.99826 * 1 2 3 27 27 H 1.07995 * 120.44907 * 0.03908 * 4 3 2 28 28 H 1.07994 * 120.75692 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.35227 * 180.02562 * 6 5 4 30 30 H 1.09004 * 109.46751 * 235.42004 * 12 11 9 31 31 H 1.08999 * 109.47346 * 355.41186 * 12 11 9 32 32 H 1.08998 * 109.47415 * 115.41955 * 12 11 9 33 33 H 0.96995 * 119.99778 * 179.97438 * 16 15 13 34 34 H 1.08997 * 117.50260 * 214.97117 * 21 8 7 35 35 H 1.09000 * 117.49525 * 359.97438 * 21 8 7 36 36 H 1.08999 * 117.49850 * 252.51254 * 22 21 8 37 37 H 1.09000 * 117.50140 * 107.48647 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2505 3.6491 0.0005 7 6 1.8770 3.5097 0.0010 8 6 1.0046 4.7384 0.0010 9 6 1.4118 5.8247 0.9628 10 8 2.0365 6.7849 0.5640 11 7 1.0818 5.7295 2.2661 12 6 0.4344 4.5161 2.7709 13 6 1.3519 6.7680 3.1193 14 1 1.7438 7.6970 2.7321 15 6 1.1216 6.6255 4.4821 16 7 0.5519 5.5340 4.9415 17 14 1.6286 7.9820 5.6621 18 1 0.5067 8.9411 5.8251 19 1 1.9690 7.3895 6.9805 20 1 2.8132 8.6937 5.1184 21 6 0.3902 5.1692 -1.3324 22 6 -0.4918 4.5423 -0.2508 23 7 1.3186 2.3140 0.0064 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 4.0229 0.3696 -0.0016 28 1 5.1254 2.5946 0.0000 29 1 3.6994 4.6314 0.0006 30 1 -0.5009 4.7816 3.2637 31 1 0.2284 3.8415 1.9399 32 1 1.0938 4.0226 3.4848 33 1 0.3915 5.4343 5.8929 34 1 0.2806 6.2383 -1.5140 35 1 0.6174 4.5640 -2.2100 36 1 -0.8451 3.5246 -0.4169 37 1 -1.1817 5.1990 0.2792 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178048559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:11 Heat of formation + Delta-G solvation = 13.411979 kcal Electronic energy + Delta-G solvation = -21857.106943 eV Core-core repulsion = 18601.955756 eV Total energy + Delta-G solvation = -3255.151187 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63790 -39.02918 -37.57587 -35.79165 -34.61559 -32.10667 -31.47535 -30.41864 -27.29494 -26.47470 -25.02233 -23.89258 -22.85634 -21.95284 -21.58483 -18.91177 -17.79216 -16.91169 -16.52633 -15.90833 -15.84231 -15.70482 -15.00410 -14.54947 -14.12175 -14.01885 -13.51690 -13.45357 -13.23899 -12.91390 -12.24901 -11.98053 -11.72803 -11.52667 -11.42673 -11.19578 -11.09822 -10.96405 -10.77983 -10.40800 -10.35157 -10.24800 -9.91219 -9.53580 -9.33095 -9.02849 -8.45739 -8.11468 -7.86509 -6.24786 -3.82038 1.32277 1.52579 3.13115 3.19957 3.23320 3.29682 3.69875 3.84433 4.04541 4.28827 4.42585 4.86775 4.91416 5.15166 5.20456 5.26311 5.35447 5.38982 5.41510 5.52246 5.57634 5.63272 5.72967 5.85313 6.00192 6.21012 6.26929 6.32597 6.48244 6.54896 6.59472 6.65182 7.16375 7.37960 7.45396 7.55238 8.04200 8.11179 8.47607 9.16792 9.43944 9.97851 10.68181 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.005778 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.906011 B = 4844.888581 C = 5086.887651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.312 6.312 3 C 0.317 3.683 4 C -0.201 4.201 5 C -0.041 4.041 6 C -0.189 4.189 7 C 0.224 3.776 8 C -0.097 4.097 9 C 0.473 3.527 10 O -0.591 6.591 11 N -0.433 5.433 12 C 0.114 3.886 13 C -0.301 4.301 14 H 0.105 0.895 15 C 0.027 3.973 16 N -0.883 5.883 17 Si 0.931 3.069 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.269 1.269 21 C -0.136 4.136 22 C -0.146 4.146 23 N -0.532 5.532 24 H 0.091 0.909 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.266 0.734 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.031 -9.884 -8.208 12.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.219 6.219 3 C 0.138 3.862 4 C -0.221 4.221 5 C -0.066 4.066 6 C -0.209 4.209 7 C 0.088 3.912 8 C -0.101 4.101 9 C 0.259 3.741 10 O -0.476 6.476 11 N -0.149 5.149 12 C -0.029 4.029 13 C -0.429 4.429 14 H 0.122 0.878 15 C -0.175 4.175 16 N -0.524 5.524 17 Si 0.758 3.242 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.174 4.174 22 C -0.184 4.184 23 N -0.255 5.255 24 H 0.110 0.890 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.160 0.840 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.592 -9.850 -8.134 12.788 hybrid contribution 0.819 0.536 0.894 1.326 sum 0.227 -9.314 -7.240 11.799 Atomic orbital electron populations 1.22819 0.77495 1.02491 1.02676 1.86204 1.22764 1.24720 1.88248 1.19701 0.89254 0.84447 0.92782 1.20961 0.91991 0.99329 1.09829 1.21363 1.00431 0.91073 0.93773 1.21864 0.94091 1.00500 1.04418 1.19612 0.90942 0.89330 0.91335 1.19933 0.95521 0.93946 1.00738 1.18487 0.86136 0.87045 0.82427 1.90509 1.44916 1.34783 1.77441 1.43651 1.49918 1.15453 1.05925 1.21811 0.99402 0.85638 0.96088 1.19827 1.40885 0.94600 0.87555 0.87753 1.25350 0.96481 0.97960 0.97697 1.70214 1.41413 1.26211 1.14581 0.85846 0.79220 0.80096 0.79073 1.20302 1.20805 1.19329 1.22945 1.01718 1.01852 0.90920 1.22992 0.91292 1.02538 1.01533 1.66924 1.40949 0.98097 1.19561 0.89037 0.92026 0.92474 0.84515 0.84199 0.84026 0.91056 0.94730 0.92223 0.92364 0.87776 0.88893 0.87636 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 101.05 1.05 1.51 16 2 O -0.31 -4.47 10.48 -18.73 -0.20 -4.66 16 3 C 0.32 5.05 7.49 -17.12 -0.13 4.92 16 4 C -0.20 -2.84 10.04 -39.28 -0.39 -3.24 16 5 C -0.04 -0.59 10.17 -39.31 -0.40 -0.99 16 6 C -0.19 -3.34 9.38 -39.43 -0.37 -3.71 16 7 C 0.22 4.19 5.51 -82.61 -0.46 3.73 16 8 C -0.10 -1.92 1.10 -156.81 -0.17 -2.10 16 9 C 0.47 11.72 6.12 -10.99 -0.07 11.66 16 10 O -0.59 -16.38 16.61 5.54 0.09 -16.28 16 11 N -0.43 -11.39 3.03 -122.19 -0.37 -11.76 16 12 C 0.11 2.75 8.52 59.85 0.51 3.26 16 13 C -0.30 -8.45 9.55 -14.94 -0.14 -8.60 16 14 H 0.10 3.04 7.21 -52.48 -0.38 2.67 16 15 C 0.03 0.72 5.45 -17.47 -0.10 0.63 16 16 N -0.88 -23.53 9.45 55.50 0.52 -23.00 16 17 Si 0.93 20.87 29.56 -169.99 -5.02 15.84 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 21 C -0.14 -2.29 9.86 -26.73 -0.26 -2.56 16 22 C -0.15 -2.49 8.33 -26.73 -0.22 -2.71 16 23 N -0.53 -9.20 8.11 -9.55 -0.08 -9.28 16 24 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 26 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 27 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 28 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 29 H 0.14 2.66 7.80 -52.49 -0.41 2.25 16 30 H 0.07 1.79 6.95 -51.93 -0.36 1.43 16 31 H 0.03 0.75 4.73 -51.93 -0.25 0.50 16 32 H 0.06 1.55 7.14 -51.93 -0.37 1.17 16 33 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 35 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.11 1.64 7.58 -51.93 -0.39 1.24 16 37 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 LS Contribution 315.08 15.07 4.75 4.75 Total: -1.00 -31.19 315.08 -6.13 -37.32 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.67 Total: 5.25 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.15 Total: 1.82 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.08 Total: -44.03 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.10 Total: -20.95 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.19 -6.13 -37.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178048559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.732 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds