Wall clock time and date at job start Mon Mar 30 2020 20:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35676 * 116.99932 * 2 1 4 4 C 1.38916 * 119.68300 * 180.02562 * 3 2 1 5 5 C 1.38385 * 119.11289 * 180.02562 * 4 3 2 6 6 C 1.38825 * 118.48152 * 359.97438 * 5 4 3 7 7 C 1.38050 * 119.29337 * 0.02562 * 6 5 4 8 8 C 1.50695 * 119.58255 * 180.02562 * 7 6 5 9 9 C 1.50697 * 115.55147 * 314.95337 * 8 7 6 10 10 O 1.21296 * 120.00133 * 99.69636 * 9 8 7 11 11 N 1.34780 * 120.00136 * 279.69150 * 9 8 7 12 12 C 1.46500 * 119.99725 * 5.51807 * 11 9 8 13 13 C 1.37098 * 120.00180 * 185.51556 * 11 9 8 14 14 H 1.08004 * 119.99611 * 5.72185 * 13 11 9 15 15 C 1.38944 * 120.00212 * 185.71812 * 13 11 9 16 16 N 1.31417 * 119.99769 * 354.89923 * 15 13 11 17 17 Si 1.86799 * 120.00434 * 174.62285 * 15 13 11 18 18 H 1.48498 * 109.47135 * 89.99991 * 17 15 13 19 19 H 1.48495 * 109.47280 * 210.00260 * 17 15 13 20 20 H 1.48501 * 109.46859 * 330.00626 * 17 15 13 21 21 C 1.53003 * 117.51979 * 100.65726 * 8 7 6 22 22 C 1.52995 * 60.00323 * 107.47940 * 21 8 7 23 23 N 1.31965 * 120.83045 * 0.27256 * 7 6 5 24 24 H 1.08999 * 109.47394 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47155 * 299.99905 * 1 2 3 26 26 H 1.09002 * 109.47469 * 59.99826 * 1 2 3 27 27 H 1.07995 * 120.44907 * 0.03908 * 4 3 2 28 28 H 1.07994 * 120.75692 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.35227 * 180.02562 * 6 5 4 30 30 H 1.09004 * 109.46751 * 235.42004 * 12 11 9 31 31 H 1.08999 * 109.47346 * 355.41186 * 12 11 9 32 32 H 1.08998 * 109.47415 * 115.41955 * 12 11 9 33 33 H 0.96995 * 119.99778 * 179.97438 * 16 15 13 34 34 H 1.08997 * 117.50260 * 214.97117 * 21 8 7 35 35 H 1.09000 * 117.49525 * 359.97438 * 21 8 7 36 36 H 1.08999 * 117.49850 * 252.51254 * 22 21 8 37 37 H 1.09000 * 117.50140 * 107.48647 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5131 0.0000 6 6 3.2505 3.6491 0.0005 7 6 1.8770 3.5097 0.0010 8 6 1.0046 4.7384 0.0010 9 6 1.4118 5.8247 0.9628 10 8 2.0365 6.7849 0.5640 11 7 1.0818 5.7295 2.2661 12 6 0.4344 4.5161 2.7709 13 6 1.3519 6.7680 3.1193 14 1 1.7438 7.6970 2.7321 15 6 1.1216 6.6255 4.4821 16 7 0.5519 5.5340 4.9415 17 14 1.6286 7.9820 5.6621 18 1 0.5067 8.9411 5.8251 19 1 1.9690 7.3895 6.9805 20 1 2.8132 8.6937 5.1184 21 6 0.3902 5.1692 -1.3324 22 6 -0.4918 4.5423 -0.2508 23 7 1.3186 2.3140 0.0064 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 4.0229 0.3696 -0.0016 28 1 5.1254 2.5946 0.0000 29 1 3.6994 4.6314 0.0006 30 1 -0.5009 4.7816 3.2637 31 1 0.2284 3.8415 1.9399 32 1 1.0938 4.0226 3.4848 33 1 0.3915 5.4343 5.8929 34 1 0.2806 6.2383 -1.5140 35 1 0.6174 4.5640 -2.2100 36 1 -0.8451 3.5246 -0.4169 37 1 -1.1817 5.1990 0.2792 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178048559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:11 Heat of formation + Delta-G solvation = -7.141486 kcal Electronic energy + Delta-G solvation = -21857.998208 eV Core-core repulsion = 18601.955756 eV Total energy + Delta-G solvation = -3256.042452 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.94644 -40.64625 -38.89337 -37.34647 -36.64009 -33.53772 -33.32888 -31.63275 -28.58003 -28.22628 -26.83496 -25.40814 -24.11089 -23.44790 -23.02980 -20.44672 -19.26398 -18.88903 -17.88794 -17.51107 -16.99627 -16.94756 -16.74772 -16.13859 -15.96181 -15.28719 -15.18795 -15.00185 -14.47647 -14.27221 -13.86312 -13.62317 -13.41086 -13.09000 -12.79869 -12.75215 -12.62558 -12.46890 -12.43633 -12.21633 -12.13419 -11.67205 -11.41468 -11.06531 -10.78316 -10.62183 -10.37678 -9.94070 -9.39900 -8.28317 -5.95631 0.07735 0.30924 1.33766 1.38592 1.51892 1.85574 2.14212 2.22294 2.53606 2.75522 3.02166 3.08545 3.23589 3.61476 3.85748 4.01477 4.05627 4.17547 4.25071 4.33665 4.49402 4.50343 4.53629 4.65084 4.68301 4.82227 4.83822 4.91922 5.07194 5.12886 5.19812 5.26355 5.39832 5.42598 5.44669 5.98167 6.24339 6.42063 6.83081 7.10599 7.42668 7.96909 8.63124 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.005778 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.906011 B = 4844.888581 C = 5086.887651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.313 6.313 3 C 0.307 3.693 4 C -0.192 4.192 5 C -0.030 4.030 6 C -0.213 4.213 7 C 0.206 3.794 8 C -0.118 4.118 9 C 0.472 3.528 10 O -0.629 6.629 11 N -0.450 5.450 12 C 0.137 3.863 13 C -0.343 4.343 14 H 0.081 0.919 15 C -0.005 4.005 16 N -0.897 5.897 17 Si 0.996 3.004 18 H -0.267 1.267 19 H -0.269 1.269 20 H -0.274 1.274 21 C -0.120 4.120 22 C -0.130 4.130 23 N -0.538 5.538 24 H 0.125 0.875 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.171 0.829 28 H 0.175 0.825 29 H 0.119 0.881 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.272 0.728 34 H 0.096 0.904 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 -11.826 -8.417 14.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.220 6.220 3 C 0.127 3.873 4 C -0.212 4.212 5 C -0.055 4.055 6 C -0.234 4.234 7 C 0.071 3.929 8 C -0.123 4.123 9 C 0.260 3.740 10 O -0.518 6.518 11 N -0.166 5.166 12 C -0.006 4.006 13 C -0.470 4.470 14 H 0.099 0.901 15 C -0.206 4.206 16 N -0.536 5.536 17 Si 0.819 3.181 18 H -0.192 1.192 19 H -0.194 1.194 20 H -0.199 1.199 21 C -0.158 4.158 22 C -0.167 4.167 23 N -0.262 5.262 24 H 0.143 0.857 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.188 0.812 28 H 0.193 0.807 29 H 0.137 0.863 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.535 -11.820 -8.346 14.480 hybrid contribution 0.797 1.056 0.923 1.613 sum 0.262 -10.764 -7.423 13.078 Atomic orbital electron populations 1.23053 0.76052 1.04622 1.02198 1.86222 1.24208 1.23679 1.87941 1.20087 0.90198 0.84522 0.92470 1.21375 0.91663 1.00369 1.07758 1.21720 1.01940 0.89972 0.91906 1.21864 0.94406 1.00796 1.06320 1.19382 0.90984 0.89316 0.93243 1.19706 0.97591 0.93660 1.01296 1.19293 0.84549 0.87593 0.82555 1.90459 1.46271 1.36835 1.78207 1.43861 1.50547 1.15629 1.06580 1.21530 0.97744 0.85096 0.96197 1.19812 1.43379 0.94897 0.88920 0.90122 1.26142 0.95694 1.00338 0.98452 1.70303 1.40858 1.27207 1.15250 0.84901 0.78775 0.77453 0.77017 1.19203 1.19384 1.19866 1.23035 1.00037 1.01915 0.90829 1.23031 0.89378 1.03476 1.00829 1.66824 1.41321 0.97934 1.20136 0.85696 0.93182 0.92228 0.81179 0.80716 0.86314 0.92457 0.92351 0.94414 0.91768 0.88536 0.86267 0.85588 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.38 113.37 1.18 1.90 16 2 O -0.31 -8.09 10.48 -89.93 -0.94 -9.03 16 3 C 0.31 9.05 7.49 84.79 0.63 9.68 16 4 C -0.19 -4.85 10.04 22.47 0.23 -4.62 16 5 C -0.03 -0.81 10.17 22.45 0.23 -0.58 16 6 C -0.21 -7.55 9.38 22.37 0.21 -7.34 16 7 C 0.21 7.63 5.51 42.49 0.23 7.87 16 8 C -0.12 -4.72 1.10 -53.67 -0.06 -4.78 16 9 C 0.47 24.27 6.12 87.66 0.54 24.81 16 10 O -0.63 -36.62 16.61 -3.08 -0.05 -36.67 16 11 N -0.45 -24.50 3.03 -658.88 -1.99 -26.50 16 12 C 0.14 6.78 8.52 127.77 1.09 7.87 16 13 C -0.34 -20.00 9.55 84.04 0.80 -19.20 16 14 H 0.08 4.97 7.21 -2.91 -0.02 4.95 16 15 C -0.01 -0.29 5.45 84.92 0.46 0.17 16 16 N -0.90 -48.11 9.45 21.66 0.20 -47.91 16 17 Si 1.00 43.07 29.56 68.60 2.03 45.10 16 18 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 C -0.12 -3.97 9.86 30.59 0.30 -3.67 16 22 C -0.13 -4.32 8.33 30.59 0.25 -4.07 16 23 N -0.54 -17.81 8.11 -297.00 -2.41 -20.22 16 24 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 26 H 0.06 1.19 8.11 -2.39 -0.02 1.17 16 27 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 28 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.12 4.67 7.80 -2.91 -0.02 4.65 16 30 H 0.06 2.94 6.95 -2.39 -0.02 2.93 16 31 H 0.06 2.55 4.73 -2.39 -0.01 2.54 16 32 H 0.04 1.99 7.14 -2.39 -0.02 1.97 16 33 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 34 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.13 3.67 7.58 -2.39 -0.02 3.65 16 37 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -69.57 315.08 4.02 -65.56 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 1.08 Total: 21.63 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 6.10 Total: 8.05 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -4.20 Total: -94.63 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -0.99 Total: -45.70 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -69.57 4.02 -65.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178048559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.416 kcal (2) G-P(sol) polarization free energy of solvation -69.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds