Wall clock time and date at job start Mon Mar 30 2020 20:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37095 * 119.99935 * 2 1 4 4 H 1.08000 * 119.99710 * 172.82157 * 3 2 1 5 5 C 1.38953 * 120.00291 * 352.82667 * 3 2 1 6 6 N 1.31412 * 119.99727 * 5.28743 * 5 3 2 7 7 Si 1.86798 * 120.00044 * 185.28917 * 5 3 2 8 8 H 1.48505 * 109.46819 * 59.99856 * 7 5 3 9 9 H 1.48502 * 109.46956 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47293 * 300.00099 * 7 5 3 11 11 C 1.34776 * 119.99865 * 180.02562 * 2 1 3 12 12 O 1.21292 * 119.99964 * 184.63204 * 11 2 1 13 13 C 1.50704 * 120.00225 * 4.62737 * 11 2 1 14 14 H 1.08994 * 109.77100 * 308.51459 * 13 11 2 15 15 C 1.53429 * 109.77294 * 69.31596 * 13 11 2 16 16 N 1.46748 * 108.61047 * 182.82982 * 15 13 11 17 17 C 1.46903 * 110.99675 * 184.98562 * 16 15 13 18 18 C 1.39848 * 112.13344 * 309.77317 * 16 15 13 19 19 C 1.39145 * 118.59853 * 199.78085 * 18 16 15 20 20 C 1.38064 * 120.23962 * 180.51177 * 19 18 16 21 21 C 1.38258 * 120.11980 * 0.24145 * 20 19 18 22 22 C 1.38180 * 120.02411 * 359.39811 * 21 20 19 23 23 C 1.38773 * 120.20145 * 0.52599 * 22 21 20 24 24 O 1.36157 * 118.74362 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.47193 * 183.87233 * 1 2 3 26 26 H 1.08995 * 109.47154 * 303.87515 * 1 2 3 27 27 H 1.09006 * 109.47141 * 63.87696 * 1 2 3 28 28 H 0.96996 * 119.99669 * 179.97438 * 6 5 3 29 29 H 1.09004 * 109.61298 * 302.56998 * 15 13 11 30 30 H 1.09002 * 109.61270 * 63.09178 * 15 13 11 31 31 H 1.09005 * 109.47137 * 191.73172 * 17 16 15 32 32 H 1.08996 * 109.47683 * 311.72944 * 17 16 15 33 33 H 1.09006 * 109.47053 * 71.73579 * 17 16 15 34 34 H 1.08001 * 119.88072 * 0.49998 * 19 18 16 35 35 H 1.08004 * 119.94288 * 179.97438 * 20 19 18 36 36 H 1.07995 * 119.98788 * 179.63530 * 21 20 19 37 37 H 1.08002 * 119.90012 * 180.29538 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.2241 1.1909 0.1169 5 6 1.4639 2.3860 -0.1503 6 7 0.1503 2.3905 -0.1880 7 14 2.4081 3.9909 -0.2986 8 1 3.2962 3.9346 -1.4875 9 1 1.4509 5.1162 -0.4492 10 1 3.2279 4.1976 0.9222 11 6 2.1388 -1.1672 -0.0005 12 8 3.3488 -1.1690 0.0843 13 6 1.3890 -2.4702 -0.1064 14 1 0.5973 -2.5018 0.6420 15 6 0.7842 -2.6084 -1.5096 16 7 0.0048 -3.8507 -1.5634 17 6 -0.5017 -4.0960 -2.9203 18 6 0.7314 -4.9493 -1.0934 19 6 0.3151 -6.2269 -1.4546 20 6 1.0012 -7.3359 -1.0011 21 6 2.1034 -7.1823 -0.1808 22 6 2.5282 -5.9170 0.1768 23 6 1.8449 -4.7972 -0.2762 24 8 2.2896 -3.5647 0.0940 25 1 -0.3633 -1.0253 0.0694 26 1 -0.3633 0.5728 0.8532 27 1 -0.3634 0.4525 -0.9227 28 1 -0.3289 3.2273 -0.2925 29 1 0.1326 -1.7585 -1.7126 30 1 1.5831 -2.6453 -2.2504 31 1 -1.2400 -4.8975 -2.8932 32 1 -0.9657 -3.1877 -3.3047 33 1 0.3246 -4.3849 -3.5699 34 1 -0.5479 -6.3516 -2.0919 35 1 0.6737 -8.3254 -1.2842 36 1 2.6350 -8.0514 0.1775 37 1 3.3923 -5.7991 0.8138 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181967893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:20 Heat of formation + Delta-G solvation = -25.921506 kcal Electronic energy + Delta-G solvation = -21768.886853 eV Core-core repulsion = 18512.030038 eV Total energy + Delta-G solvation = -3256.856815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.30335 -40.37348 -38.34747 -37.69288 -36.77825 -33.90716 -32.06974 -31.34292 -30.01059 -28.38846 -27.19143 -25.87636 -25.35701 -22.99531 -21.99476 -20.73572 -19.37419 -19.05019 -18.45846 -17.76422 -17.14718 -16.43287 -16.32439 -15.97884 -15.76836 -15.63785 -15.28946 -15.12689 -14.96836 -14.61218 -14.22985 -13.76195 -13.51812 -13.18400 -13.03206 -12.93738 -12.79094 -12.74374 -12.50398 -12.38610 -12.15457 -12.09909 -11.68166 -11.09252 -10.95488 -10.47897 -10.00874 -9.48784 -8.65897 -8.32690 -6.00250 0.35415 0.43292 1.33170 1.39808 1.49876 1.72789 1.89039 2.29439 2.44817 2.89521 3.00336 3.09080 3.37791 3.61190 3.70497 3.76481 4.10319 4.17667 4.30830 4.36612 4.40797 4.47651 4.52194 4.57967 4.60148 4.87485 4.94820 5.10867 5.11296 5.29148 5.37861 5.41009 5.58408 5.72942 5.77127 5.87755 6.02933 6.33513 6.45009 7.04847 7.29615 7.83497 8.58686 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.034856 B = 0.004714 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.117628 B = 5937.928888 C = 6487.400759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.444 5.444 3 C -0.347 4.347 4 H 0.077 0.923 5 C 0.004 3.996 6 N -0.888 5.888 7 Si 0.996 3.004 8 H -0.273 1.273 9 H -0.263 1.263 10 H -0.273 1.273 11 C 0.430 3.570 12 O -0.625 6.625 13 C 0.096 3.904 14 H 0.100 0.900 15 C 0.039 3.961 16 N -0.491 5.491 17 C 0.023 3.977 18 C 0.022 3.978 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.107 4.107 22 C -0.142 4.142 23 C 0.050 3.950 24 O -0.321 6.321 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.276 0.724 29 H 0.116 0.884 30 H 0.043 0.957 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.039 0.961 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.602 -15.549 -5.041 17.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.162 5.162 3 C -0.474 4.474 4 H 0.095 0.905 5 C -0.198 4.198 6 N -0.527 5.527 7 Si 0.819 3.181 8 H -0.199 1.199 9 H -0.188 1.188 10 H -0.198 1.198 11 C 0.218 3.782 12 O -0.513 6.513 13 C 0.036 3.964 14 H 0.118 0.882 15 C -0.088 4.088 16 N -0.207 5.207 17 C -0.122 4.122 18 C -0.076 4.076 19 C -0.142 4.142 20 C -0.139 4.139 21 C -0.126 4.126 22 C -0.161 4.161 23 C 0.003 3.997 24 O -0.235 6.235 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.134 0.866 30 H 0.061 0.939 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.174 0.826 35 H 0.181 0.819 36 H 0.177 0.823 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.487 -15.174 -4.678 17.153 hybrid contribution 1.047 1.266 -0.205 1.655 sum -5.440 -13.908 -4.882 15.712 Atomic orbital electron populations 1.21880 0.78081 0.98361 1.03897 1.43812 1.07332 1.04014 1.61061 1.19740 0.93209 0.83631 1.50829 0.90480 1.26071 0.96852 1.02002 0.94887 1.70216 1.06482 1.28831 1.47198 0.84962 0.77877 0.76374 0.78904 1.19857 1.18754 1.19835 1.19837 0.87592 0.84917 0.85885 1.90494 1.15972 1.87245 1.57558 1.22096 0.90565 0.84906 0.98819 0.88218 1.22621 0.97301 0.94245 0.94681 1.58921 1.35220 1.00605 1.25958 1.22701 1.00521 1.04638 0.84354 1.19252 0.94196 0.93139 1.01027 1.21231 1.01631 0.89214 1.02118 1.21361 0.95338 0.99543 0.97678 1.21243 0.97594 0.95613 0.98159 1.20726 1.01771 0.90759 1.02874 1.19345 0.95621 0.85083 0.99646 1.86295 1.42440 1.13880 1.80864 0.92434 0.92160 0.91334 0.91305 0.86571 0.93903 0.87477 0.89350 0.94196 0.82601 0.81892 0.82298 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.36 7.57 127.77 0.97 6.33 16 2 N -0.44 -23.56 3.03 -658.89 -1.99 -25.55 16 3 C -0.35 -19.89 9.56 84.04 0.80 -19.09 16 4 H 0.08 4.76 7.18 -2.91 -0.02 4.74 16 5 C 0.00 0.21 5.46 84.93 0.46 0.67 16 6 N -0.89 -44.72 9.46 21.66 0.20 -44.51 16 7 Si 1.00 41.82 29.56 68.60 2.03 43.85 16 8 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 9 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 11 C 0.43 22.96 7.00 87.66 0.61 23.58 16 12 O -0.63 -39.04 16.13 15.67 0.25 -38.79 16 13 C 0.10 4.15 2.53 29.99 0.08 4.23 16 14 H 0.10 4.04 7.04 -2.39 -0.02 4.02 16 15 C 0.04 1.40 4.61 86.48 0.40 1.80 16 16 N -0.49 -14.40 4.89 -719.15 -3.52 -17.92 16 17 C 0.02 0.46 8.81 127.69 1.13 1.59 16 18 C 0.02 0.66 5.80 38.25 0.22 0.88 16 19 C -0.12 -2.66 9.07 22.45 0.20 -2.46 16 20 C -0.12 -2.22 10.03 22.23 0.22 -2.00 16 21 C -0.11 -2.27 10.04 22.26 0.22 -2.05 16 22 C -0.14 -4.25 9.94 22.38 0.22 -4.03 16 23 C 0.05 1.80 6.47 22.57 0.15 1.94 16 24 O -0.32 -14.44 9.62 -76.60 -0.74 -15.18 16 25 H 0.06 2.16 4.88 -2.39 -0.01 2.15 16 26 H 0.06 2.85 7.09 -2.39 -0.02 2.83 16 27 H 0.07 3.11 7.01 -2.38 -0.02 3.09 16 28 H 0.28 12.97 8.31 -92.71 -0.77 12.20 16 29 H 0.12 3.95 6.26 -2.39 -0.01 3.94 16 30 H 0.04 1.66 8.13 -2.39 -0.02 1.64 16 31 H 0.11 1.56 6.55 -2.38 -0.02 1.55 16 32 H 0.09 1.64 8.06 -2.39 -0.02 1.62 16 33 H 0.04 0.82 8.10 -2.38 -0.02 0.80 16 34 H 0.16 2.43 6.18 -2.91 -0.02 2.41 16 35 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -72.19 299.84 3.02 -69.17 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 1.09 Total: 17.54 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 5.69 Total: 11.39 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -5.30 Total: -87.98 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.48 Total: -53.97 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -72.19 3.02 -69.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181967893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.250 kcal (2) G-P(sol) polarization free energy of solvation -72.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds