Wall clock time and date at job start Mon Mar 30 2020 20:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48497 * 109.46985 * 269.99795 * 3 2 1 5 5 H 1.48499 * 109.47154 * 29.99960 * 3 2 1 6 6 H 1.48507 * 109.46880 * 150.00375 * 3 2 1 7 7 C 1.37879 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99861 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99677 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47011 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47038 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46909 * 179.97438 * 11 10 9 13 13 C 1.34778 * 120.00079 * 180.02562 * 12 11 10 14 14 O 1.21286 * 120.00175 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00150 * 180.02562 * 13 12 11 16 16 C 1.53006 * 109.46934 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.46931 * 179.97438 * 16 15 13 18 18 O 1.21484 * 120.00087 * 0.02562 * 17 16 15 19 19 C 1.41037 * 119.99991 * 179.97438 * 17 16 15 20 20 C 1.41077 * 126.18024 * 179.97438 * 19 17 16 21 21 C 1.46306 * 107.88739 * 179.97438 * 20 19 17 22 22 C 1.35896 * 108.29380 * 0.02562 * 21 20 19 23 23 C 1.41070 * 126.18222 * 359.97438 * 19 17 16 24 24 H 1.08005 * 126.05245 * 0.05834 * 23 19 17 25 25 H 0.97001 * 119.99322 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47371 * 60.00267 * 9 7 2 27 27 H 1.09006 * 109.47584 * 299.99980 * 9 7 2 28 28 H 1.09000 * 109.47086 * 59.99786 * 10 9 7 29 29 H 1.08994 * 109.47020 * 300.00030 * 10 9 7 30 30 H 1.09000 * 109.47319 * 59.99975 * 11 10 9 31 31 H 1.08998 * 109.47759 * 299.99979 * 11 10 9 32 32 H 0.96993 * 120.00239 * 359.97438 * 12 11 10 33 33 H 1.08996 * 109.47352 * 60.00005 * 15 13 12 34 34 H 1.09002 * 109.46858 * 299.99467 * 15 13 12 35 35 H 1.09004 * 109.46710 * 60.00275 * 16 15 13 36 36 H 1.08994 * 109.47298 * 299.99850 * 16 15 13 37 37 H 1.08000 * 126.04920 * 0.25203 * 20 19 17 38 38 H 1.08002 * 125.84903 * 180.02562 * 21 20 19 39 39 H 1.07999 * 125.85394 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 -0.0012 12 7 6.0398 -4.0179 -0.0004 13 6 7.3649 -4.2642 -0.0008 14 8 8.1531 -3.3424 -0.0022 15 6 7.8672 -5.6850 -0.0006 16 6 9.3972 -5.6850 -0.0017 17 6 9.8995 -7.1058 -0.0009 18 8 9.1101 -8.0292 0.0000 19 6 11.2862 -7.3636 -0.0022 20 6 11.8969 -8.6353 -0.0012 21 6 13.3465 -8.4377 -0.0039 22 6 13.5949 -7.1016 -0.0059 23 6 12.3130 -6.3963 -0.0049 24 1 12.1770 -5.3248 -0.0053 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.6797 0.8895 27 1 3.8746 -0.6808 -0.8905 28 1 3.6578 -3.1507 -0.8896 29 1 3.6585 -3.1502 0.8903 30 1 5.9156 -2.1225 0.8883 31 1 5.9142 -2.1231 -0.8916 32 1 5.4095 -4.7551 0.0011 33 1 7.5036 -6.1991 -0.8903 34 1 7.5041 -6.1986 0.8897 35 1 9.7611 -5.1708 0.8879 36 1 9.7599 -5.1716 -0.8921 37 1 11.3849 -9.5862 -0.0031 38 1 14.0915 -9.2196 -0.0042 39 1 14.5711 -6.6397 -0.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184243769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:24 Heat of formation + Delta-G solvation = -95.987116 kcal Electronic energy + Delta-G solvation = -19412.483571 eV Core-core repulsion = 16204.358655 eV Total energy + Delta-G solvation = -3208.124916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.139 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.59315 -37.34505 -34.83322 -34.63957 -32.56742 -31.44713 -30.60817 -27.42562 -26.35175 -24.47846 -23.55331 -21.76901 -19.91235 -19.43766 -18.59096 -16.49390 -16.35890 -16.09316 -15.13085 -14.79887 -14.64823 -14.11714 -13.85630 -13.53421 -12.91644 -12.73583 -12.17599 -11.92780 -11.50804 -11.29982 -11.07484 -10.97829 -10.37543 -10.30415 -10.29229 -9.75890 -9.53168 -9.50140 -9.26357 -9.25843 -9.23216 -9.15192 -9.10269 -8.64498 -8.51349 -8.00970 -7.87031 -7.52665 -5.52529 -5.35754 -4.61360 -3.48960 3.62474 3.82659 3.86351 3.87792 3.97860 4.42236 4.98327 5.48192 5.82255 5.87345 5.93967 6.21634 6.37343 6.41559 6.48728 6.68482 6.80189 6.91207 7.19966 7.20954 7.30235 7.40320 7.46007 7.59887 7.67128 7.71013 7.85860 7.88847 7.95379 8.01665 8.10736 8.32320 8.68791 8.73345 8.93302 9.07523 9.22709 9.42888 9.53420 9.85199 9.94218 10.06425 10.10970 11.60968 Molecular weight = 276.14amu Principal moments of inertia in cm(-1) A = 0.053519 B = 0.002236 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.057827 B =12521.234426 C =13007.939755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.063 3.937 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.514 4.514 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.113 4.113 11 C 0.115 3.885 12 N -0.732 5.732 13 C 0.509 3.491 14 O -0.548 6.548 15 C -0.127 4.127 16 C -0.142 4.142 17 C 0.416 3.584 18 O -0.534 6.534 19 C -0.271 4.271 20 C -0.222 4.222 21 C -0.244 4.244 22 C -0.236 4.236 23 C -0.241 4.241 24 H 0.086 0.914 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.399 0.601 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 0.654 0.031 1.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.552 4.552 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.151 4.151 11 C -0.009 4.009 12 N -0.384 5.384 13 C 0.296 3.704 14 O -0.425 6.425 15 C -0.167 4.167 16 C -0.180 4.180 17 C 0.306 3.694 18 O -0.421 6.421 19 C -0.272 4.272 20 C -0.241 4.241 21 C -0.262 4.262 22 C -0.254 4.254 23 C -0.260 4.260 24 H 0.104 0.896 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.233 0.767 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.857 1.021 0.033 2.120 hybrid contribution 0.175 0.720 -0.024 0.741 sum 2.033 1.741 0.008 2.676 Atomic orbital electron populations 1.69938 1.06280 1.26621 1.51912 1.25031 0.94752 0.99200 0.94698 0.86761 0.80538 0.83441 0.78533 1.20310 1.21591 1.18725 1.21175 0.89525 0.94488 1.50046 0.90960 1.19529 0.97017 0.91926 0.96644 1.21690 0.91172 1.00576 1.01683 1.21551 0.95642 0.82064 1.01596 1.46184 1.07062 1.09397 1.75774 1.20953 0.82127 0.91947 0.75396 1.90656 1.55400 1.46812 1.49678 1.21452 0.97776 0.92665 1.04794 1.21692 0.93063 0.98595 1.04639 1.20269 0.89325 0.88757 0.71040 1.90368 1.59593 1.47808 1.44282 1.18635 0.91619 0.95658 1.21315 1.22510 0.92287 0.93548 1.15722 1.21456 0.93539 0.94425 1.16817 1.21470 0.93925 0.94128 1.15912 1.22591 0.92168 0.93948 1.17297 0.89597 0.92986 0.96266 0.96716 0.92181 0.92149 0.92139 0.92134 0.76711 0.88912 0.88911 0.89235 0.89226 0.89880 0.90456 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -33.59 13.96 55.43 0.77 -32.82 16 2 C 0.06 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.88 27.48 27.47 -169.99 -4.67 22.81 16 4 H -0.28 -8.51 7.11 56.52 0.40 -8.11 16 5 H -0.29 -8.84 7.11 56.52 0.40 -8.44 16 6 H -0.26 -8.09 6.54 56.52 0.37 -7.72 16 7 C -0.51 -18.26 9.66 -34.44 -0.33 -18.60 16 8 H 0.07 2.70 7.99 -52.49 -0.42 2.28 16 9 C -0.01 -0.42 4.04 -27.88 -0.11 -0.53 16 10 C -0.11 -3.15 5.27 -26.73 -0.14 -3.29 16 11 C 0.11 3.10 5.67 -4.04 -0.02 3.08 16 12 N -0.73 -18.82 5.56 -60.29 -0.33 -19.16 16 13 C 0.51 14.22 7.83 -10.98 -0.09 14.13 16 14 O -0.55 -17.21 15.98 5.55 0.09 -17.12 16 15 C -0.13 -3.46 4.99 -27.88 -0.14 -3.60 16 16 C -0.14 -4.30 4.25 -27.88 -0.12 -4.41 16 17 C 0.42 14.22 6.93 -33.25 -0.23 13.99 16 18 O -0.53 -18.80 16.44 5.38 0.09 -18.71 16 19 C -0.27 -10.00 5.94 -106.69 -0.63 -10.63 16 20 C -0.22 -8.29 10.89 -35.26 -0.38 -8.68 16 21 C -0.24 -8.77 11.04 -37.18 -0.41 -9.18 16 22 C -0.24 -8.43 11.04 -37.18 -0.41 -8.84 16 23 C -0.24 -8.74 10.60 -35.27 -0.37 -9.11 16 24 H 0.09 2.94 7.94 -52.48 -0.42 2.52 16 25 H 0.26 9.05 8.31 -40.82 -0.34 8.71 16 26 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 27 H 0.01 0.46 7.57 -51.93 -0.39 0.06 16 28 H 0.06 1.64 8.14 -51.93 -0.42 1.21 16 29 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 30 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 31 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 32 H 0.40 9.14 8.47 -40.82 -0.35 8.80 16 33 H 0.09 2.43 8.10 -51.93 -0.42 2.01 16 34 H 0.09 2.43 8.10 -51.93 -0.42 2.01 16 35 H 0.09 2.72 8.10 -51.93 -0.42 2.30 16 36 H 0.09 2.73 8.10 -51.93 -0.42 2.31 16 37 H 0.08 3.02 8.06 -52.49 -0.42 2.59 16 38 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 39 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -2.00 -76.45 340.40 -8.17 -84.62 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -5.76 Total: 18.75 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: -3.49 Total: -43.51 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.44 Total: -51.97 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: 0.18 Total: -35.84 kcal Atomic # 14 Polarization: 27.48 SS G_CDS: -4.67 Total: 22.81 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -76.45 -8.17 -84.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184243769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.365 kcal (2) G-P(sol) polarization free energy of solvation -76.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds