Wall clock time and date at job start Mon Mar 30 2020 20:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46512 * 1 3 3 C 1.36547 * 120.00127 * 2 1 4 4 H 1.07998 * 119.99883 * 174.12908 * 3 2 1 5 5 C 1.39279 * 119.99862 * 354.12485 * 3 2 1 6 6 N 1.31213 * 120.00095 * 5.12639 * 5 3 2 7 7 Si 1.86802 * 120.00040 * 185.12317 * 5 3 2 8 8 H 1.48501 * 109.47058 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47290 * 120.00196 * 7 5 3 10 10 H 1.48499 * 109.47034 * 240.00141 * 7 5 3 11 11 C 1.34769 * 119.99632 * 180.02562 * 2 1 3 12 12 O 1.21553 * 119.99929 * 185.46588 * 11 2 1 13 13 C 1.48173 * 120.00446 * 5.46624 * 11 2 1 14 14 C 1.41279 * 120.55423 * 255.28982 * 13 11 2 15 15 C 1.35182 * 119.84127 * 179.78827 * 14 13 11 16 16 N 1.35791 * 121.00415 * 0.49143 * 15 14 13 17 17 C 1.46502 * 119.42060 * 179.75867 * 16 15 14 18 18 C 1.53782 * 113.61213 * 59.72841 * 17 16 15 19 19 C 1.53780 * 87.07592 * 220.01432 * 18 17 16 20 20 C 1.53781 * 87.17577 * 25.38926 * 19 18 17 21 21 C 1.34588 * 121.15473 * 359.47913 * 16 15 14 22 22 O 1.22024 * 119.95181 * 180.26222 * 21 16 15 23 23 C 1.38523 * 120.55712 * 75.30642 * 13 11 2 24 24 H 1.08994 * 109.47190 * 184.76544 * 1 2 3 25 25 H 1.08996 * 109.46484 * 304.76782 * 1 2 3 26 26 H 1.08996 * 109.46963 * 64.76588 * 1 2 3 27 27 H 0.97010 * 119.99733 * 180.02562 * 6 5 3 28 28 H 1.08005 * 120.08438 * 0.04177 * 14 13 11 29 29 H 1.08004 * 119.49993 * 180.22910 * 15 14 13 30 30 H 1.08999 * 112.84484 * 190.92085 * 17 16 15 31 31 H 1.08996 * 113.61487 * 105.47224 * 18 17 16 32 32 H 1.08997 * 113.69227 * 334.57475 * 18 17 16 33 33 H 1.09001 * 113.61429 * 139.98059 * 19 18 17 34 34 H 1.08999 * 113.62035 * 270.79756 * 19 18 17 35 35 H 1.09010 * 113.61241 * 89.15513 * 20 19 18 36 36 H 1.08994 * 113.62125 * 220.05491 * 20 19 18 37 37 H 1.08008 * 120.49115 * 0.02562 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1479 1.1825 0.0000 4 1 3.2236 1.1849 0.0957 5 6 1.4570 2.3855 -0.1235 6 7 0.1449 2.3900 -0.1386 7 14 2.3982 3.9927 -0.2675 8 1 3.8569 3.7175 -0.2253 9 1 2.0565 4.6530 -1.5530 10 1 2.0294 4.8851 0.8607 11 6 2.1389 -1.1672 -0.0005 12 8 3.3503 -1.1697 0.0997 13 6 1.4031 -2.4474 -0.1233 14 6 1.2163 -3.2794 1.0032 15 6 0.5390 -4.4423 0.8756 16 7 0.0400 -4.8330 -0.3253 17 6 -0.6840 -6.1028 -0.4250 18 6 -1.9301 -6.1735 0.4733 19 6 -1.5352 -7.6294 0.7721 20 6 -0.0882 -7.2239 0.4456 21 6 0.1940 -4.0716 -1.4243 22 8 -0.2676 -4.4418 -2.4915 23 6 0.8871 -2.8488 -1.3446 24 1 -0.3633 -1.0240 0.0854 25 1 -0.3632 0.5860 0.8442 26 1 -0.3633 0.4381 -0.9296 27 1 -0.3362 3.2280 -0.2249 28 1 1.6101 -2.9850 1.9648 29 1 0.3963 -5.0723 1.7412 30 1 -0.8712 -6.4033 -1.4559 31 1 -2.8683 -6.0791 -0.0734 32 1 -1.8799 -5.5200 1.3441 33 1 -1.6838 -7.9173 1.8128 34 1 -1.9560 -8.3490 0.0698 35 1 0.4679 -6.8577 1.3087 36 1 0.4584 -7.9761 -0.1231 37 1 1.0154 -2.2332 -2.2227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198750488.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:48 Heat of formation + Delta-G solvation = 6.980247 kcal Electronic energy + Delta-G solvation = -21292.023133 eV Core-core repulsion = 18036.593046 eV Total energy + Delta-G solvation = -3255.430088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.44804 -38.85599 -38.11645 -36.34455 -34.80437 -33.12451 -31.53349 -29.67190 -26.84889 -26.08926 -26.04412 -24.58641 -23.71160 -22.65278 -19.90642 -19.34667 -17.85704 -17.13186 -17.06169 -16.43403 -15.70067 -15.39965 -15.31815 -14.75414 -14.24646 -14.12160 -13.67925 -13.53389 -13.04027 -12.87615 -12.81065 -12.32157 -11.92940 -11.77347 -11.62778 -11.56888 -11.35662 -11.03927 -11.00117 -10.79119 -10.73395 -10.37280 -10.32012 -9.87212 -9.49979 -9.12736 -8.52765 -7.99435 -7.72438 -6.35134 -3.89225 0.98802 2.09092 2.74746 3.09087 3.21332 3.28653 3.65089 3.81904 4.03941 4.10382 4.28495 4.49708 4.53517 4.58153 4.71858 5.01386 5.10650 5.29256 5.29725 5.43649 5.45877 5.51349 5.55273 5.57321 5.61809 5.75687 5.98617 6.12908 6.31676 6.36220 6.63996 6.73916 7.06191 7.27784 7.34594 7.47527 7.94389 8.25319 8.37766 9.06629 9.31335 9.84135 10.58543 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.036745 B = 0.004135 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.828843 B = 6770.208694 C = 6882.513159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.426 5.426 3 C -0.305 4.305 4 H 0.109 0.891 5 C 0.030 3.970 6 N -0.879 5.879 7 Si 0.934 3.066 8 H -0.266 1.266 9 H -0.279 1.279 10 H -0.280 1.280 11 C 0.458 3.542 12 O -0.586 6.586 13 C 0.025 3.975 14 C -0.192 4.192 15 C 0.115 3.885 16 N -0.488 5.488 17 C 0.095 3.905 18 C -0.149 4.149 19 C -0.136 4.136 20 C -0.151 4.151 21 C 0.520 3.480 22 O -0.563 6.563 23 C -0.224 4.224 24 H 0.022 0.978 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.268 0.732 28 H 0.147 0.853 29 H 0.160 0.840 30 H 0.132 0.868 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 -15.423 4.801 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.141 5.141 3 C -0.433 4.433 4 H 0.126 0.874 5 C -0.173 4.173 6 N -0.519 5.519 7 Si 0.760 3.240 8 H -0.190 1.190 9 H -0.205 1.205 10 H -0.206 1.206 11 C 0.245 3.755 12 O -0.473 6.473 13 C 0.017 3.983 14 C -0.216 4.216 15 C -0.010 4.010 16 N -0.199 5.199 17 C -0.008 4.008 18 C -0.188 4.188 19 C -0.174 4.174 20 C -0.188 4.188 21 C 0.323 3.677 22 O -0.447 6.447 23 C -0.247 4.247 24 H 0.040 0.960 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.165 0.835 29 H 0.177 0.823 30 H 0.150 0.850 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.843 -15.473 4.143 17.051 hybrid contribution 0.220 0.950 0.002 0.976 sum -5.622 -14.523 4.145 16.116 Atomic orbital electron populations 1.21845 0.79800 0.96582 1.04690 1.43579 1.06339 1.04571 1.59660 1.19893 0.93771 0.81952 1.47692 0.87363 1.25421 0.95768 0.99928 0.96201 1.70107 1.06083 1.27479 1.48244 0.85733 0.79820 0.80515 0.77932 1.19031 1.20475 1.20576 1.17806 0.87289 0.82849 0.87544 1.90640 1.13156 1.86218 1.57252 1.20778 0.89251 0.95113 0.93116 1.20692 1.05752 0.95072 1.00050 1.21589 0.94500 0.96208 0.88722 1.45371 1.46006 1.19770 1.08766 1.23251 0.92991 0.82254 1.02273 1.23441 0.98125 0.97301 0.99893 1.22688 0.95781 0.96451 1.02496 1.23512 0.97560 0.97764 1.00012 1.17059 0.82223 0.85349 0.83076 1.90892 1.53070 1.73710 1.26993 1.22532 1.05029 0.97824 0.99298 0.95954 0.90424 0.91344 0.92096 0.83528 0.82293 0.84991 0.90302 0.89204 0.90417 0.89534 0.89037 0.90224 0.83241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.64 8.67 59.85 0.52 3.16 16 2 N -0.43 -10.99 3.01 -123.18 -0.37 -11.36 16 3 C -0.31 -8.42 9.56 -15.07 -0.14 -8.57 16 4 H 0.11 3.12 7.17 -52.49 -0.38 2.74 16 5 C 0.03 0.78 5.46 -17.43 -0.10 0.68 16 6 N -0.88 -22.67 9.43 55.51 0.52 -22.15 16 7 Si 0.93 20.40 29.56 -169.99 -5.02 15.38 16 8 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 11 C 0.46 11.38 7.09 -12.18 -0.09 11.30 16 12 O -0.59 -16.54 16.69 5.32 0.09 -16.45 16 13 C 0.02 0.49 3.78 -104.56 -0.40 0.10 16 14 C -0.19 -3.00 9.78 -39.51 -0.39 -3.38 16 15 C 0.12 1.42 8.94 -16.89 -0.15 1.26 16 16 N -0.49 -6.85 2.83 -111.67 -0.32 -7.16 16 17 C 0.09 1.02 4.18 -67.03 -0.28 0.74 16 18 C -0.15 -1.24 7.67 -25.92 -0.20 -1.44 16 19 C -0.14 -0.85 8.08 -25.92 -0.21 -1.06 16 20 C -0.15 -1.15 7.49 -25.83 -0.19 -1.34 16 21 C 0.52 9.51 7.41 -15.38 -0.11 9.40 16 22 O -0.56 -11.67 16.51 4.90 0.08 -11.59 16 23 C -0.22 -4.42 9.34 -38.51 -0.36 -4.78 16 24 H 0.02 0.45 6.00 -51.93 -0.31 0.14 16 25 H 0.08 1.87 6.94 -51.93 -0.36 1.50 16 26 H 0.07 1.67 7.14 -51.93 -0.37 1.30 16 27 H 0.27 6.52 8.30 -40.82 -0.34 6.18 16 28 H 0.15 2.09 8.06 -52.48 -0.42 1.67 16 29 H 0.16 1.25 6.37 -52.48 -0.33 0.92 16 30 H 0.13 1.61 7.17 -51.93 -0.37 1.23 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.72 7.55 -51.93 -0.39 0.32 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.62 6.18 -51.92 -0.32 0.30 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.15 3.07 8.06 -52.48 -0.42 2.65 16 LS Contribution 308.31 15.07 4.65 4.65 Total: -1.00 -32.92 308.31 -6.98 -39.89 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.51 Total: 2.73 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -2.09 Total: 6.06 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.16 Total: -40.67 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: 0.17 Total: -28.04 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.92 -6.98 -39.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198750488.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.875 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds