Wall clock time and date at job start Mon Mar 30 2020 20:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36549 * 119.99775 * 2 1 4 4 H 1.08000 * 119.99452 * 174.12198 * 3 2 1 5 5 C 1.39275 * 119.99992 * 354.12770 * 3 2 1 6 6 N 1.31210 * 120.00069 * 5.12035 * 5 3 2 7 7 Si 1.86804 * 119.99864 * 185.12162 * 5 3 2 8 8 H 1.48505 * 109.47097 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.47235 * 119.99588 * 7 5 3 10 10 H 1.48496 * 109.47163 * 240.00017 * 7 5 3 11 11 C 1.34781 * 120.00084 * 180.02562 * 2 1 3 12 12 O 1.21549 * 120.00014 * 185.47090 * 11 2 1 13 13 C 1.48172 * 119.99908 * 5.46647 * 11 2 1 14 14 C 1.41285 * 120.55235 * 255.28575 * 13 11 2 15 15 C 1.35178 * 119.83664 * 180.02562 * 14 13 11 16 16 N 1.35789 * 121.00693 * 0.02562 * 15 14 13 17 17 C 1.46505 * 119.42051 * 180.02562 * 16 15 14 18 18 C 1.52994 * 109.47194 * 90.00237 * 17 16 15 19 19 C 1.52998 * 117.49425 * 243.74355 * 18 17 16 20 20 C 1.53004 * 117.49550 * 175.08652 * 18 17 16 21 21 C 1.34590 * 121.15704 * 359.95395 * 16 15 14 22 22 O 1.22028 * 119.94857 * 180.02562 * 21 16 15 23 23 C 1.38523 * 120.55600 * 75.31204 * 13 11 2 24 24 H 1.09001 * 109.46989 * 184.76397 * 1 2 3 25 25 H 1.08998 * 109.47002 * 304.76300 * 1 2 3 26 26 H 1.08999 * 109.47016 * 64.76957 * 1 2 3 27 27 H 0.96997 * 119.99733 * 180.02562 * 6 5 3 28 28 H 1.07992 * 120.08250 * 0.05068 * 14 13 11 29 29 H 1.07998 * 119.49672 * 180.02562 * 15 14 13 30 30 H 1.09007 * 109.46740 * 210.00049 * 17 16 15 31 31 H 1.08993 * 109.47037 * 329.99147 * 17 16 15 32 32 H 1.08994 * 115.55531 * 29.41756 * 18 17 16 33 33 H 1.08997 * 117.50254 * 0.02562 * 19 18 17 34 34 H 1.09000 * 117.49904 * 145.02293 * 19 18 17 35 35 H 1.09008 * 117.49808 * 214.97306 * 20 18 17 36 36 H 1.08997 * 117.50117 * 359.96969 * 20 18 17 37 37 H 1.08007 * 120.49202 * 359.69698 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1477 1.1826 0.0000 4 1 3.2235 1.1850 0.0958 5 6 1.4568 2.3855 -0.1234 6 7 0.1448 2.3900 -0.1385 7 14 2.3980 3.9927 -0.2674 8 1 3.8567 3.7176 -0.2252 9 1 2.0564 4.6530 -1.5529 10 1 2.0293 4.8851 0.8608 11 6 2.1390 -1.1672 -0.0005 12 8 3.3503 -1.1697 0.0998 13 6 1.4031 -2.4475 -0.1233 14 6 1.2164 -3.2794 1.0032 15 6 0.5433 -4.4446 0.8746 16 7 0.0403 -4.8331 -0.3254 17 6 -0.6840 -6.1027 -0.4251 18 6 -2.1721 -5.8628 -0.1626 19 6 -2.7893 -6.5322 1.0670 20 6 -3.1203 -7.0512 -0.3345 21 6 0.1943 -4.0717 -1.4244 22 8 -0.2672 -4.4420 -2.4917 23 6 0.8873 -2.8489 -1.3447 24 1 -0.3633 -1.0241 0.0854 25 1 -0.3633 0.5860 0.8442 26 1 -0.3633 0.4381 -0.9296 27 1 -0.3364 3.2278 -0.2249 28 1 1.6102 -2.9851 1.9647 29 1 0.4034 -5.0762 1.7394 30 1 -0.5537 -6.5178 -1.4246 31 1 -0.2930 -6.8030 0.3129 32 1 -2.5455 -4.8770 -0.4395 33 1 -2.1352 -7.1430 1.6891 34 1 -3.5690 -5.9868 1.5988 35 1 -4.1176 -6.8471 -0.7242 36 1 -2.6840 -8.0038 -0.6351 37 1 1.0111 -2.2308 -2.2217 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198769277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:50 Heat of formation + Delta-G solvation = -10.343200 kcal Electronic energy + Delta-G solvation = -21092.875336 eV Core-core repulsion = 17836.694047 eV Total energy + Delta-G solvation = -3256.181289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.44845 -40.46124 -38.41978 -37.81067 -36.84656 -35.13365 -33.57977 -30.98858 -29.20662 -28.27897 -26.70298 -25.05893 -24.30631 -23.17342 -21.79882 -21.14088 -19.14990 -18.66526 -18.48786 -18.19444 -17.13772 -16.83922 -16.42898 -16.01879 -15.92196 -15.69875 -15.10100 -15.01145 -14.78061 -13.96205 -13.91488 -13.70946 -13.57179 -13.29937 -12.90067 -12.86543 -12.79377 -12.55459 -12.31187 -12.25597 -12.12719 -11.60438 -11.26609 -11.11773 -10.96209 -10.88280 -10.44458 -10.03977 -9.03505 -8.35246 -6.00159 -0.35490 0.78088 1.31488 1.40243 1.54694 1.58851 1.83040 2.20107 2.50325 2.86554 2.88455 3.03626 3.59675 3.67655 3.79242 3.82259 3.99890 4.07042 4.15720 4.26159 4.28797 4.49395 4.62364 4.66111 4.78452 4.84059 4.96131 5.05788 5.08401 5.22351 5.30266 5.32180 5.36074 5.39200 5.52395 5.90382 6.00032 6.34528 6.90372 7.02610 7.30944 7.83780 8.57080 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.030801 B = 0.004135 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.833652 B = 6769.781736 C = 7018.333470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.439 5.439 3 C -0.350 4.350 4 H 0.083 0.917 5 C 0.000 4.000 6 N -0.889 5.889 7 Si 0.999 3.001 8 H -0.273 1.273 9 H -0.270 1.270 10 H -0.264 1.264 11 C 0.451 3.549 12 O -0.630 6.630 13 C 0.026 3.974 14 C -0.225 4.225 15 C 0.173 3.827 16 N -0.485 5.485 17 C 0.122 3.878 18 C -0.193 4.193 19 C -0.155 4.155 20 C -0.169 4.169 21 C 0.517 3.483 22 O -0.594 6.594 23 C -0.256 4.256 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.276 0.724 28 H 0.162 0.838 29 H 0.231 0.769 30 H 0.087 0.913 31 H 0.141 0.859 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.119 -17.105 6.623 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.154 5.154 3 C -0.478 4.478 4 H 0.101 0.899 5 C -0.202 4.202 6 N -0.528 5.528 7 Si 0.821 3.179 8 H -0.198 1.198 9 H -0.195 1.195 10 H -0.189 1.189 11 C 0.240 3.760 12 O -0.520 6.520 13 C 0.019 3.981 14 C -0.247 4.247 15 C 0.046 3.954 16 N -0.193 5.193 17 C 0.002 3.998 18 C -0.212 4.212 19 C -0.192 4.192 20 C -0.206 4.206 21 C 0.321 3.679 22 O -0.481 6.481 23 C -0.279 4.279 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.179 0.821 29 H 0.247 0.753 30 H 0.105 0.895 31 H 0.159 0.841 32 H 0.096 0.904 33 H 0.143 0.857 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.062 -17.186 5.985 19.904 hybrid contribution 0.439 1.540 -0.627 1.719 sum -7.622 -15.646 5.358 18.210 Atomic orbital electron populations 1.21640 0.78487 0.97820 1.03132 1.43797 1.07229 1.04680 1.59692 1.19867 0.93210 0.83672 1.51010 0.89857 1.26209 0.96754 1.02419 0.94807 1.70177 1.06848 1.28754 1.47000 0.84798 0.78037 0.76449 0.78588 1.19762 1.19507 1.18895 1.18604 0.87169 0.84274 0.85944 1.90583 1.15234 1.87294 1.58842 1.20531 0.89272 0.93331 0.94982 1.20845 1.08547 0.96247 0.99088 1.22610 0.89003 0.94930 0.88831 1.45541 1.44633 1.20774 1.08392 1.21833 0.89633 0.82631 1.05718 1.22446 0.93585 0.98353 1.06832 1.23246 1.03264 1.02394 0.90281 1.23058 0.99659 0.97375 1.00540 1.16734 0.82094 0.85218 0.83879 1.90881 1.54489 1.74196 1.28532 1.22278 1.07743 0.99376 0.98501 0.93355 0.91368 0.93166 0.91310 0.82053 0.75287 0.89489 0.84105 0.90441 0.85714 0.88502 0.88892 0.86938 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.29 8.67 127.77 1.11 7.40 16 2 N -0.44 -23.68 3.01 -661.90 -1.99 -25.67 16 3 C -0.35 -20.21 9.56 84.21 0.80 -19.40 16 4 H 0.08 5.11 7.17 -2.91 -0.02 5.09 16 5 C 0.00 0.02 5.46 85.04 0.46 0.49 16 6 N -0.89 -46.30 9.43 21.72 0.20 -46.09 16 7 Si 1.00 42.20 29.56 68.60 2.03 44.23 16 8 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 9 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 11 C 0.45 23.44 7.09 86.88 0.62 24.06 16 12 O -0.63 -37.40 16.69 -3.87 -0.06 -37.46 16 13 C 0.03 1.07 3.78 -19.82 -0.07 0.99 16 14 C -0.22 -6.44 9.78 22.31 0.22 -6.22 16 15 C 0.17 3.31 10.25 83.38 0.85 4.17 16 16 N -0.48 -11.80 2.58 -651.00 -1.68 -13.48 16 17 C 0.12 2.04 5.59 86.38 0.48 2.52 16 18 C -0.19 -3.23 6.01 -10.79 -0.06 -3.30 16 19 C -0.16 -1.54 10.18 30.62 0.31 -1.23 16 20 C -0.17 -2.10 10.25 30.62 0.31 -1.79 16 21 C 0.52 18.62 7.41 84.89 0.63 19.25 16 22 O -0.59 -24.93 16.61 -5.41 -0.09 -25.01 16 23 C -0.26 -10.45 9.34 22.96 0.21 -10.23 16 24 H 0.05 2.01 6.00 -2.39 -0.01 1.99 16 25 H 0.07 3.34 6.94 -2.39 -0.02 3.33 16 26 H 0.05 2.54 7.14 -2.39 -0.02 2.53 16 27 H 0.28 13.33 8.30 -92.71 -0.77 12.56 16 28 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 29 H 0.23 1.34 8.02 -2.91 -0.02 1.32 16 30 H 0.09 1.80 7.37 -2.38 -0.02 1.79 16 31 H 0.14 0.98 7.73 -2.39 -0.02 0.96 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.12 0.58 8.03 -2.39 -0.02 0.56 16 34 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.12 5.47 8.06 -2.91 -0.02 5.45 16 Total: -1.00 -78.50 317.98 5.36 -73.14 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.08 Total: 13.63 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 5.88 Total: 16.72 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -3.47 Total: -85.24 kcal Atomic # 8 Polarization: -62.32 SS G_CDS: -0.15 Total: -62.48 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -78.50 5.36 -73.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198769277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.796 kcal (2) G-P(sol) polarization free energy of solvation -78.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds