Wall clock time and date at job start Mon Mar 30 2020 20:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36469 * 119.99916 * 2 1 4 4 H 1.07997 * 119.99963 * 190.08295 * 3 2 1 5 5 C 1.39318 * 119.99816 * 10.08410 * 3 2 1 6 6 N 1.31191 * 120.00190 * 27.11413 * 5 3 2 7 7 Si 1.86803 * 119.99509 * 207.11347 * 5 3 2 8 8 H 1.48500 * 109.47118 * 94.99620 * 7 5 3 9 9 H 1.48501 * 109.46796 * 214.99387 * 7 5 3 10 10 H 1.48494 * 109.47142 * 334.99445 * 7 5 3 11 11 C 1.34771 * 119.99706 * 180.02562 * 2 1 3 12 12 O 1.21639 * 119.99623 * 185.42184 * 11 2 1 13 13 C 1.47544 * 120.00324 * 5.42520 * 11 2 1 14 14 C 1.36556 * 119.77777 * 75.22013 * 13 11 2 15 15 C 1.40216 * 119.88032 * 179.74899 * 14 13 11 16 16 C 1.36265 * 119.43269 * 0.25144 * 15 14 13 17 17 C 1.41101 * 119.55469 * 359.97438 * 16 15 14 18 18 O 1.21974 * 119.94274 * 180.02562 * 17 16 15 19 19 N 1.34663 * 120.11312 * 359.97438 * 17 16 15 20 20 C 1.46505 * 119.71302 * 180.02562 * 19 17 16 21 21 C 1.52996 * 109.46782 * 86.57961 * 20 19 17 22 22 C 1.53001 * 117.49791 * 243.62225 * 21 20 19 23 23 C 1.53002 * 60.00064 * 252.50959 * 22 21 20 24 24 H 1.09003 * 109.47217 * 273.81874 * 1 2 3 25 25 H 1.08998 * 109.47333 * 33.81946 * 1 2 3 26 26 H 1.08999 * 109.47565 * 153.81856 * 1 2 3 27 27 H 0.97001 * 120.00020 * 180.02562 * 6 5 3 28 28 H 1.07995 * 120.06501 * 0.02562 * 14 13 11 29 29 H 1.07991 * 120.28642 * 180.27394 * 15 14 13 30 30 H 1.07999 * 120.22135 * 180.02562 * 16 15 14 31 31 H 1.09003 * 109.47088 * 206.57485 * 20 19 17 32 32 H 1.09000 * 109.47205 * 326.57896 * 20 19 17 33 33 H 1.09000 * 115.55296 * 29.33062 * 21 20 19 34 34 H 1.08997 * 117.49984 * 359.97438 * 22 21 20 35 35 H 1.09006 * 117.49939 * 145.02687 * 22 21 20 36 36 H 1.08998 * 117.50209 * 252.50938 * 23 22 21 37 37 H 1.09000 * 117.49793 * 107.48772 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1473 1.1819 0.0000 4 1 3.2148 1.1891 -0.1637 5 6 1.4668 2.3790 0.2113 6 7 0.3559 2.3878 0.9091 7 14 2.1363 3.9717 -0.4991 8 1 1.4853 4.2431 -1.8059 9 1 1.8524 5.0891 0.4369 10 1 3.6034 3.8491 -0.6930 11 6 2.1388 -1.1672 -0.0005 12 8 3.3511 -1.1696 0.0990 13 6 1.4061 -2.4420 -0.1219 14 6 0.9018 -2.8218 -1.3328 15 6 0.2097 -4.0354 -1.4517 16 6 0.0435 -4.8221 -0.3515 17 6 0.5703 -4.4041 0.8889 18 8 0.4260 -5.1030 1.8782 19 7 1.2329 -3.2355 0.9823 20 6 1.7767 -2.8103 2.2745 21 6 3.1711 -3.4110 2.4634 22 6 3.3654 -4.3966 3.6174 23 6 3.9597 -2.9895 3.7050 24 1 -0.3634 0.0684 1.0254 25 1 -0.3634 0.8538 -0.5720 26 1 -0.3634 -0.9222 -0.4534 27 1 -0.1180 3.2213 1.0558 28 1 1.0397 -2.1908 -2.1983 29 1 -0.1880 -4.3443 -2.4070 30 1 -0.4872 -5.7595 -0.4287 31 1 1.8431 -1.7226 2.3006 32 1 1.1217 -3.1538 3.0752 33 1 3.7335 -3.5911 1.5472 34 1 2.4999 -4.6168 4.2423 35 1 4.0556 -5.2255 3.4606 36 1 5.0408 -2.8926 3.6057 37 1 3.4850 -2.2842 4.3872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198789058.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:53 Heat of formation + Delta-G solvation = 5.985909 kcal Electronic energy + Delta-G solvation = -21970.126090 eV Core-core repulsion = 18714.652884 eV Total energy + Delta-G solvation = -3255.473206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.13188 -38.55375 -37.15141 -36.25377 -34.96516 -33.81873 -32.01067 -29.77469 -27.44802 -26.59513 -25.35499 -23.61020 -22.51615 -22.09981 -20.61249 -19.75906 -17.41845 -17.16568 -16.95282 -16.51866 -15.61327 -15.33154 -15.05009 -14.56064 -14.30764 -14.09168 -13.86017 -13.75554 -12.98474 -12.71016 -12.21615 -11.90797 -11.81308 -11.72489 -11.64830 -11.59382 -11.28910 -11.22454 -10.96040 -10.52738 -10.42695 -10.29791 -9.81699 -9.71175 -9.66579 -9.25725 -8.74437 -8.11983 -7.60347 -6.69969 -4.03999 1.04153 2.13523 2.69251 3.03365 3.12724 3.17524 3.61724 3.83879 3.95693 4.06506 4.41882 4.79746 4.93266 4.94849 5.10379 5.20158 5.25459 5.28062 5.49199 5.53171 5.64225 5.82096 5.88680 5.89849 6.07881 6.10067 6.24338 6.33721 6.34733 6.48664 6.53442 6.59205 6.76764 6.92094 7.29224 7.42312 7.74492 8.16433 8.34128 8.85676 9.07713 9.62289 10.33789 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.006350 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.036600 B = 4408.324917 C = 5249.923749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.408 5.408 3 C -0.320 4.320 4 H 0.112 0.888 5 C 0.041 3.959 6 N -0.850 5.850 7 Si 0.923 3.077 8 H -0.274 1.274 9 H -0.282 1.282 10 H -0.265 1.265 11 C 0.446 3.554 12 O -0.570 6.570 13 C 0.182 3.818 14 C -0.226 4.226 15 C -0.010 4.010 16 C -0.258 4.258 17 C 0.516 3.484 18 O -0.559 6.559 19 N -0.475 5.475 20 C 0.126 3.874 21 C -0.155 4.155 22 C -0.173 4.173 23 C -0.167 4.167 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.039 0.961 27 H 0.274 0.726 28 H 0.145 0.855 29 H 0.134 0.866 30 H 0.144 0.856 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.674 -6.672 -1.720 7.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.123 5.123 3 C -0.448 4.448 4 H 0.129 0.871 5 C -0.166 4.166 6 N -0.486 5.486 7 Si 0.749 3.251 8 H -0.200 1.200 9 H -0.208 1.208 10 H -0.189 1.189 11 C 0.233 3.767 12 O -0.456 6.456 13 C 0.069 3.931 14 C -0.250 4.250 15 C -0.031 4.031 16 C -0.280 4.280 17 C 0.318 3.682 18 O -0.443 6.443 19 N -0.186 5.186 20 C 0.004 3.996 21 C -0.174 4.174 22 C -0.210 4.210 23 C -0.205 4.205 24 H 0.078 0.922 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.162 0.838 29 H 0.151 0.849 30 H 0.162 0.838 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.338 -6.924 -0.902 7.109 hybrid contribution 0.031 0.875 -0.458 0.988 sum -1.307 -6.049 -1.359 6.336 Atomic orbital electron populations 1.21742 0.80513 1.00064 1.02491 1.43522 1.05872 1.04509 1.58430 1.19772 0.95274 0.81344 1.48377 0.87056 1.25377 0.96191 0.99959 0.95111 1.70049 1.17907 1.29085 1.31565 0.85960 0.79973 0.80171 0.79040 1.19986 1.20785 1.18891 1.17291 0.87512 0.82168 0.89707 1.90713 1.12532 1.85555 1.56784 1.20953 0.92226 0.92660 0.87232 1.20718 1.07333 1.00300 0.96618 1.21330 0.91440 0.91808 0.98566 1.22107 1.09832 1.03838 0.92189 1.17247 0.79787 0.80210 0.90947 1.90878 1.61568 1.52916 1.38894 1.45758 1.44933 1.18653 1.09261 1.21517 0.93433 1.00847 0.83772 1.22405 0.96534 1.03904 0.94570 1.23025 1.03157 0.92940 1.01911 1.22895 0.99774 0.97834 0.99990 0.92160 0.90483 0.94206 0.91515 0.83769 0.84858 0.83820 0.88241 0.88655 0.87211 0.88609 0.89173 0.88624 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.99 8.70 59.85 0.52 2.51 16 2 N -0.41 -9.60 3.01 -123.41 -0.37 -9.97 16 3 C -0.32 -8.17 9.37 -15.09 -0.14 -8.31 16 4 H 0.11 3.00 7.36 -52.49 -0.39 2.62 16 5 C 0.04 0.99 4.83 -17.42 -0.08 0.91 16 6 N -0.85 -20.64 10.88 55.51 0.60 -20.03 16 7 Si 0.92 18.85 29.63 -169.99 -5.04 13.81 16 8 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 9 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 10 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 11 C 0.45 10.19 5.18 -12.47 -0.06 10.13 16 12 O -0.57 -14.79 16.72 5.24 0.09 -14.70 16 13 C 0.18 3.50 4.98 -82.34 -0.41 3.09 16 14 C -0.23 -3.64 8.54 -39.45 -0.34 -3.97 16 15 C -0.01 -0.13 10.08 -39.55 -0.40 -0.53 16 16 C -0.26 -3.93 10.00 -39.21 -0.39 -4.32 16 17 C 0.52 9.63 7.41 -15.22 -0.11 9.52 16 18 O -0.56 -11.67 16.70 4.94 0.08 -11.59 16 19 N -0.48 -8.98 2.62 -115.48 -0.30 -9.29 16 20 C 0.13 2.33 5.23 -4.04 -0.02 2.31 16 21 C -0.16 -2.72 5.99 -90.62 -0.54 -3.27 16 22 C -0.17 -2.58 10.18 -26.73 -0.27 -2.85 16 23 C -0.17 -2.52 10.25 -26.73 -0.27 -2.79 16 24 H 0.06 1.32 7.74 -51.93 -0.40 0.92 16 25 H 0.08 1.65 6.75 -51.93 -0.35 1.30 16 26 H 0.04 0.72 5.77 -51.93 -0.30 0.42 16 27 H 0.27 6.26 8.30 -40.82 -0.34 5.92 16 28 H 0.14 2.14 8.06 -52.49 -0.42 1.72 16 29 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.10 2.02 6.76 -51.93 -0.35 1.66 16 32 H 0.10 1.69 7.23 -51.93 -0.38 1.32 16 33 H 0.11 2.12 8.14 -51.93 -0.42 1.70 16 34 H 0.10 1.41 8.03 -51.93 -0.42 0.99 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -29.14 316.31 -7.38 -36.52 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.68 Total: 8.05 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.53 Total: 2.43 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.07 Total: -39.29 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: 0.17 Total: -26.29 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.04 Total: 13.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.14 -7.38 -36.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198789058.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.506 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds