Wall clock time and date at job start Mon Mar 30 2020 20:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99768 * 2 1 4 4 H 1.48501 * 109.47092 * 270.00053 * 3 2 1 5 5 H 1.48501 * 109.47275 * 29.99763 * 3 2 1 6 6 H 1.48496 * 109.47125 * 149.99957 * 3 2 1 7 7 C 1.38809 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99605 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00163 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00090 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.52653 * 324.91289 * 10 9 7 12 12 C 1.53040 * 109.49822 * 84.99734 * 10 9 7 13 13 C 1.53044 * 109.53662 * 181.31643 * 12 10 9 14 14 C 1.53191 * 109.31440 * 298.63203 * 13 12 10 15 15 N 1.46926 * 108.89109 * 54.56430 * 14 13 12 16 16 C 1.34780 * 120.63278 * 126.46534 * 15 14 13 17 17 O 1.21271 * 120.00661 * 179.97438 * 16 15 14 18 18 C 1.50705 * 119.99400 * 0.02562 * 16 15 14 19 19 C 1.52999 * 109.46814 * 179.97438 * 18 16 15 20 20 C 1.53005 * 109.47318 * 179.97438 * 19 18 16 21 21 F 1.39897 * 109.47062 * 175.00093 * 20 19 18 22 22 F 1.39901 * 109.46944 * 295.00527 * 20 19 18 23 23 C 1.46957 * 118.71783 * 306.64359 * 15 14 13 24 24 H 0.96993 * 120.00461 * 0.02562 * 1 2 3 25 25 H 0.97003 * 119.99517 * 359.97438 * 9 7 2 26 26 H 1.08994 * 109.45892 * 61.29782 * 12 10 9 27 27 H 1.09001 * 109.45142 * 301.33010 * 12 10 9 28 28 H 1.09003 * 109.49852 * 178.68467 * 13 12 10 29 29 H 1.08997 * 109.49691 * 58.58900 * 13 12 10 30 30 H 1.09002 * 109.58786 * 174.42474 * 14 13 12 31 31 H 1.08996 * 109.58870 * 294.70753 * 14 13 12 32 32 H 1.08994 * 109.47621 * 299.99921 * 18 16 15 33 33 H 1.09004 * 109.46918 * 60.00053 * 18 16 15 34 34 H 1.08998 * 109.47835 * 300.00152 * 19 18 16 35 35 H 1.09004 * 109.47091 * 60.00458 * 19 18 16 36 36 H 1.08999 * 109.46412 * 55.00337 * 20 19 18 37 37 H 1.09001 * 109.46843 * 293.57352 * 23 15 14 38 38 H 1.08997 * 109.71602 * 173.28846 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9683 -3.5518 -0.5900 12 6 2.4226 -4.0361 1.4377 13 6 3.2163 -5.3446 1.4359 14 6 2.3502 -6.4619 0.8457 15 7 1.8729 -6.0440 -0.4795 16 6 2.0711 -6.8265 -1.5589 17 8 1.6719 -6.4707 -2.6474 18 6 2.7877 -8.1442 -1.4130 19 6 2.8785 -8.8292 -2.7780 20 6 3.6066 -10.1668 -2.6300 21 9 3.5898 -10.8447 -3.8536 22 9 4.9310 -9.9364 -2.2426 23 6 1.1790 -4.7548 -0.6060 24 1 -0.4850 0.8399 -0.0004 25 1 0.3557 -2.3880 0.0005 26 1 1.5112 -4.1651 2.0214 27 1 3.0280 -3.2448 1.8797 28 1 3.4956 -5.6021 2.4576 29 1 4.1156 -5.2238 0.8320 30 1 2.9426 -7.3719 0.7506 31 1 1.4979 -6.6474 1.4993 32 1 3.7916 -7.9709 -1.0255 33 1 2.2369 -8.7827 -0.7223 34 1 1.8745 -9.0026 -3.1652 35 1 3.4291 -8.1908 -3.4690 36 1 3.1064 -10.7708 -1.8731 37 1 0.2297 -4.7993 -0.0721 38 1 0.9964 -4.5372 -1.6583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208576360.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:03 Heat of formation + Delta-G solvation = -141.397833 kcal Electronic energy + Delta-G solvation = -21610.779012 eV Core-core repulsion = 17930.518332 eV Total energy + Delta-G solvation = -3680.260679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.139 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.20387 -47.21692 -40.12905 -37.48770 -34.57284 -33.99648 -32.22658 -31.27634 -28.77604 -27.21045 -25.00403 -23.82928 -22.41648 -22.09667 -20.11896 -18.92125 -17.88724 -17.59005 -17.25080 -17.18948 -16.02234 -15.68872 -15.51139 -14.81408 -14.22056 -14.10940 -14.07686 -13.74391 -13.57315 -13.43074 -13.33092 -12.96977 -12.80718 -12.49059 -12.40573 -12.17028 -11.56065 -11.17744 -11.11440 -10.97788 -10.92863 -10.68565 -10.45103 -10.39683 -10.11101 -9.81289 -9.65111 -8.93942 -8.47083 -7.01791 -5.80154 -3.10020 2.63960 2.95065 3.42211 3.47381 3.48732 3.57639 3.92666 4.16887 4.28118 4.56369 4.59225 4.79297 4.85748 4.95953 5.09428 5.15164 5.25892 5.47709 5.52168 5.54044 5.65812 5.71354 5.73613 5.76926 5.99450 6.11320 6.19830 6.35027 6.50482 6.64351 6.83760 7.00611 7.49641 7.66972 8.20998 8.37846 9.49013 10.03902 10.38872 11.42319 Molecular weight = 276.14amu Principal moments of inertia in cm(-1) A = 0.032000 B = 0.003375 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.782874 B = 8294.289301 C = 8514.606925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.168 3.832 11 H 0.050 0.950 12 C -0.138 4.138 13 C -0.134 4.134 14 C 0.107 3.893 15 N -0.604 5.604 16 C 0.514 3.486 17 O -0.541 6.541 18 C -0.140 4.140 19 C -0.157 4.157 20 C 0.262 3.738 21 F -0.206 7.206 22 F -0.207 7.207 23 C 0.105 3.895 24 H 0.256 0.744 25 H 0.384 0.616 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.844 -21.465 1.545 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.362 5.362 10 C 0.057 3.943 11 H 0.068 0.932 12 C -0.178 4.178 13 C -0.173 4.173 14 C -0.016 4.016 15 N -0.338 5.338 16 C 0.301 3.699 17 O -0.419 6.419 18 C -0.180 4.180 19 C -0.195 4.195 20 C 0.208 3.792 21 F -0.188 7.188 22 F -0.188 7.188 23 C -0.017 4.017 24 H 0.066 0.934 25 H 0.218 0.782 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.128 0.872 37 H 0.083 0.917 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.763 -21.116 0.936 21.908 hybrid contribution 0.272 0.965 0.165 1.016 sum 6.035 -20.151 1.101 21.065 Atomic orbital electron populations 1.69659 1.05119 1.25777 1.57421 1.24752 0.95528 0.97730 1.02773 0.86182 0.78623 0.83745 0.77580 1.21646 1.21748 1.20743 1.19204 0.90980 0.83882 1.43050 0.91149 1.42306 1.05804 0.99519 1.88590 1.20470 0.94630 0.85996 0.93172 0.93239 1.22289 0.99614 0.95282 1.00649 1.21939 0.98823 0.96011 1.00527 1.21792 0.98368 0.97722 0.83761 1.48129 1.57403 1.20468 1.07766 1.20351 0.79762 0.85771 0.84009 1.90723 1.51304 1.73987 1.25857 1.21599 1.02876 0.95377 0.98184 1.22428 1.03604 0.94493 0.99017 1.21957 0.79912 0.94348 0.82943 1.92991 1.96564 1.81701 1.47506 1.92992 1.39133 1.95591 1.91098 1.22017 0.95036 0.81291 1.03374 0.93429 0.78186 0.92453 0.91519 0.91252 0.91802 0.90255 0.91257 0.87963 0.88377 0.87863 0.88508 0.87208 0.91674 0.88890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.82 5.12 -53.31 -0.27 -18.09 16 10 C 0.17 3.28 2.92 -67.81 -0.20 3.08 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.14 -2.27 5.47 -26.69 -0.15 -2.41 16 13 C -0.13 -1.59 6.08 -26.61 -0.16 -1.75 16 14 C 0.11 1.09 6.34 -3.71 -0.02 1.06 16 15 N -0.60 -8.27 2.98 -172.74 -0.51 -8.78 16 16 C 0.51 7.00 7.70 -10.98 -0.08 6.92 16 17 O -0.54 -9.67 15.40 5.56 0.09 -9.58 16 18 C -0.14 -1.19 3.96 -27.88 -0.11 -1.30 16 19 C -0.16 -1.37 4.73 -26.73 -0.13 -1.50 16 20 C 0.26 1.95 5.29 37.16 0.20 2.15 16 21 F -0.21 -2.02 17.34 2.25 0.04 -1.99 16 22 F -0.21 -1.95 17.02 2.25 0.04 -1.91 16 23 C 0.11 1.82 5.89 -3.69 -0.02 1.80 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.56 5.93 -51.93 -0.31 0.25 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.77 7.48 -51.93 -0.39 0.38 16 33 H 0.10 0.54 7.94 -51.93 -0.41 0.13 16 34 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 36 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.83 7.02 -51.93 -0.36 1.47 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -32.75 319.19 -6.59 -39.34 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.56 Total: 5.26 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.92 Total: 0.87 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.06 Total: -54.10 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.08 Total: -3.89 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.75 -6.59 -39.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208576360.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.059 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds