Wall clock time and date at job start Mon Mar 30 2020 20:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99926 * 2 1 4 4 C 1.53006 * 109.47337 * 149.99896 * 3 2 1 5 5 C 1.52998 * 109.47371 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47482 * 300.00616 * 5 4 3 7 7 C 1.52999 * 109.47110 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.46889 * 174.99654 * 7 6 5 9 9 C 1.42905 * 113.99778 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46882 * 30.00382 * 9 8 7 11 11 C 1.50701 * 109.46777 * 150.00026 * 9 8 7 12 12 H 1.07995 * 120.00385 * 0.02562 * 11 9 8 13 13 C 1.37882 * 119.99927 * 180.02562 * 11 9 8 14 14 N 1.31512 * 119.99626 * 0.02562 * 13 11 9 15 15 Si 1.86793 * 120.00223 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47161 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47382 * 119.99787 * 15 13 11 18 18 H 1.48496 * 109.47217 * 240.00249 * 15 13 11 19 19 C 1.52998 * 109.47307 * 269.99994 * 9 8 7 20 20 Cl 1.80306 * 109.46760 * 65.00077 * 19 9 8 21 21 C 1.53001 * 109.47019 * 59.99512 * 6 5 4 22 22 C 1.52998 * 109.47348 * 270.00009 * 3 2 1 23 23 H 1.08994 * 109.47245 * 59.99671 * 1 2 3 24 24 H 1.09003 * 109.46901 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47271 * 299.99319 * 1 2 3 26 26 H 1.09003 * 109.47504 * 30.00512 * 3 2 1 27 27 H 1.09000 * 109.46539 * 60.00374 * 4 3 2 28 28 H 1.08993 * 109.47139 * 300.00457 * 4 3 2 29 29 H 1.09000 * 109.47219 * 179.97438 * 5 4 3 30 30 H 1.09007 * 109.46684 * 60.00427 * 5 4 3 31 31 H 1.09002 * 109.46606 * 299.99432 * 6 5 4 32 32 H 1.08997 * 109.47286 * 54.99637 * 7 6 5 33 33 H 1.08997 * 109.46848 * 294.99735 * 7 6 5 34 34 H 0.97006 * 119.99899 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.47009 * 184.99894 * 19 9 8 36 36 H 1.08995 * 109.47158 * 305.00200 * 19 9 8 37 37 H 1.08997 * 109.46949 * 60.00920 * 21 6 5 38 38 H 1.09006 * 109.46667 * 179.97438 * 21 6 5 39 39 H 1.08994 * 109.47113 * 300.00049 * 22 3 2 40 40 H 1.09004 * 109.46765 * 60.00165 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2633 0.7213 5 6 3.9815 2.6609 0.7207 6 6 4.1889 3.1263 -0.7219 7 6 4.8109 4.5241 -0.7224 8 8 5.1120 4.9110 -2.0646 9 6 5.6996 6.2088 -2.1775 10 1 6.2744 6.4268 -1.2774 11 6 6.6113 6.2447 -3.3769 12 1 6.7299 5.3648 -3.9917 13 6 7.2942 7.4010 -3.6893 14 7 7.1503 8.4724 -2.9404 15 14 8.4238 7.4459 -5.1764 16 1 8.4118 6.1210 -5.8473 17 1 7.9520 8.4861 -6.1253 18 1 9.8062 7.7657 -4.7384 19 6 4.5962 7.2555 -2.3441 20 17 3.5930 7.3147 -0.8471 21 6 2.8402 3.1684 -1.4431 22 6 2.2176 1.7714 -1.4425 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8901 26 1 1.3450 1.9994 0.5139 27 1 4.0241 0.5694 0.2074 28 1 3.2111 0.9313 1.7489 29 1 4.9421 2.6309 1.2350 30 1 3.3163 3.3551 1.2344 31 1 4.8541 2.4321 -1.2355 32 1 5.7276 4.5141 -0.1328 33 1 4.1076 5.2348 -0.2884 34 1 7.6304 9.2861 -3.1604 35 1 5.0460 8.2329 -2.5190 36 1 3.9669 6.9881 -3.1929 37 1 2.1751 3.8627 -0.9295 38 1 2.9880 3.5005 -2.4708 39 1 2.8828 1.0775 -1.9563 40 1 1.2567 1.8015 -1.9563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224842270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:06 Heat of formation + Delta-G solvation = -136.525577 kcal Electronic energy + Delta-G solvation = -20060.235599 eV Core-core repulsion = 16899.690126 eV Total energy + Delta-G solvation = -3160.545474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.128 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.31486 -37.44588 -36.13026 -34.65617 -33.22508 -30.86771 -30.69765 -28.81156 -26.76618 -25.22604 -24.40346 -22.57055 -21.06010 -20.78277 -19.67629 -16.71324 -16.59846 -15.96437 -15.53985 -15.20883 -14.80296 -14.51512 -14.15296 -13.68169 -13.49576 -13.34519 -12.85466 -12.47400 -12.13520 -12.09064 -11.92468 -11.89244 -11.35752 -11.23226 -11.06130 -11.00787 -10.82512 -10.66616 -10.47718 -10.40433 -10.29736 -10.11219 -9.62493 -9.43262 -9.37297 -9.22727 -8.59487 -8.01504 -6.31043 -4.36824 3.17056 3.26294 3.32046 3.48733 3.66546 4.20421 4.66521 4.75075 4.90888 5.04356 5.11358 5.16584 5.21687 5.33624 5.39773 5.44001 5.52271 5.60197 5.68284 5.74292 5.98138 6.03888 6.10507 6.16724 6.24605 6.28574 6.36568 6.41185 6.45760 6.54441 6.67725 6.78399 6.95870 7.15411 7.33798 7.66079 7.98003 8.42688 8.83391 9.31327 10.76145 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.004119 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.713522 B = 6796.309864 C = 7281.658649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.088 3.912 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.085 4.085 7 C 0.053 3.947 8 O -0.386 6.386 9 C 0.214 3.786 10 H 0.030 0.970 11 C -0.513 4.513 12 H 0.073 0.927 13 C 0.059 3.941 14 N -0.892 5.892 15 Si 0.911 3.089 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.029 4.029 20 Cl -0.252 7.252 21 C -0.105 4.105 22 C -0.139 4.139 23 H 0.040 0.960 24 H 0.082 0.918 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.268 0.732 35 H 0.126 0.874 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.645 -10.205 5.831 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C 0.031 3.969 4 C -0.149 4.149 5 C -0.147 4.147 6 C -0.103 4.103 7 C -0.024 4.024 8 O -0.306 6.306 9 C 0.157 3.843 10 H 0.047 0.953 11 C -0.551 4.551 12 H 0.091 0.909 13 C -0.143 4.143 14 N -0.530 5.530 15 Si 0.738 3.262 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.092 4.092 20 Cl -0.227 7.227 21 C -0.143 4.143 22 C -0.176 4.176 23 H 0.059 0.941 24 H 0.100 0.900 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.144 0.856 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.575 -10.288 5.786 15.199 hybrid contribution 0.328 0.642 -0.497 0.875 sum -9.248 -9.646 5.289 14.372 Atomic orbital electron populations 1.22743 0.81569 1.02323 0.99873 1.87888 1.19261 1.28534 1.95133 1.22236 0.94845 0.83754 0.96077 1.21548 0.95256 0.97852 1.00250 1.21483 1.00932 0.95455 0.96879 1.21138 0.96995 0.97066 0.95138 1.22725 0.98406 0.94879 0.86391 1.87824 1.82065 1.36256 1.24408 1.19954 0.88445 0.77719 0.98138 0.95254 1.21148 1.24055 0.98520 1.11338 0.90869 1.25008 0.96742 0.95175 0.97374 1.69826 1.42509 1.02340 1.38354 0.86217 0.79968 0.78388 0.81654 1.19375 1.20702 1.20689 1.25887 0.92868 1.07367 0.83045 1.98595 1.76580 1.98680 1.48830 1.21434 0.95687 0.94992 1.02145 1.22033 1.01099 0.98104 0.96405 0.94115 0.89979 0.94280 0.92348 0.91085 0.91628 0.91262 0.91829 0.90750 0.94915 0.91944 0.92197 0.85595 0.91130 0.92279 0.90450 0.91216 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.38 16 2 O -0.39 -4.80 10.35 -35.23 -0.36 -5.16 16 3 C 0.09 1.06 2.61 -26.73 -0.07 0.99 16 4 C -0.11 -1.31 5.57 -26.73 -0.15 -1.46 16 5 C -0.11 -1.39 5.20 -26.73 -0.14 -1.53 16 6 C -0.08 -1.31 2.43 -90.62 -0.22 -1.53 16 7 C 0.05 1.00 4.92 37.16 0.18 1.19 16 8 O -0.39 -8.80 9.49 -35.23 -0.33 -9.13 16 9 C 0.21 5.33 2.38 -27.88 -0.07 5.26 16 10 H 0.03 0.79 7.79 -51.93 -0.40 0.39 16 11 C -0.51 -13.72 8.89 -34.44 -0.31 -14.03 16 12 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 13 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 14 N -0.89 -23.93 11.30 55.43 0.63 -23.31 16 15 Si 0.91 20.38 29.54 -169.99 -5.02 15.36 16 16 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.03 -0.68 6.17 37.16 0.23 -0.45 16 20 Cl -0.25 -5.16 26.09 -51.86 -1.35 -6.51 16 21 C -0.11 -1.54 5.10 -26.76 -0.14 -1.68 16 22 C -0.14 -1.77 5.53 -26.76 -0.15 -1.92 16 23 H 0.04 0.35 7.87 -51.93 -0.41 -0.06 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 26 H 0.06 0.67 7.79 -51.93 -0.40 0.26 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.03 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.06 1.18 5.09 -51.93 -0.26 0.92 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.13 3.17 5.96 -51.93 -0.31 2.86 16 36 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.28 7.82 -51.93 -0.41 0.88 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 LS Contribution 328.74 15.07 4.95 4.95 Total: -1.00 -27.00 328.74 -8.11 -35.12 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.79 Total: 0.99 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 0.18 Total: -12.31 kcal Atomic # 7 Polarization: -23.93 SS G_CDS: 0.63 Total: -23.31 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.70 Total: -14.30 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -5.16 SS G_CDS: -1.35 Total: -6.51 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.00 -8.11 -35.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224842270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.410 kcal (2) G-P(sol) polarization free energy of solvation -27.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds