Wall clock time and date at job start Mon Mar 30 2020 20:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 113.99926 * 2 1 4 4 C 1.53006 * 109.47337 * 149.99896 * 3 2 1 5 5 C 1.52998 * 109.47371 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47482 * 300.00616 * 5 4 3 7 7 C 1.52999 * 109.47110 * 179.97438 * 6 5 4 8 8 O 1.42899 * 109.46889 * 174.99654 * 7 6 5 9 9 C 1.42905 * 113.99778 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46882 * 30.00382 * 9 8 7 11 11 C 1.50701 * 109.46777 * 150.00026 * 9 8 7 12 12 H 1.07995 * 120.00385 * 0.02562 * 11 9 8 13 13 C 1.37882 * 119.99927 * 180.02562 * 11 9 8 14 14 N 1.31512 * 119.99626 * 0.02562 * 13 11 9 15 15 Si 1.86793 * 120.00223 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47161 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47382 * 119.99787 * 15 13 11 18 18 H 1.48496 * 109.47217 * 240.00249 * 15 13 11 19 19 C 1.52998 * 109.47307 * 269.99994 * 9 8 7 20 20 Cl 1.80306 * 109.46760 * 65.00077 * 19 9 8 21 21 C 1.53001 * 109.47019 * 59.99512 * 6 5 4 22 22 C 1.52998 * 109.47348 * 270.00009 * 3 2 1 23 23 H 1.08994 * 109.47245 * 59.99671 * 1 2 3 24 24 H 1.09003 * 109.46901 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47271 * 299.99319 * 1 2 3 26 26 H 1.09003 * 109.47504 * 30.00512 * 3 2 1 27 27 H 1.09000 * 109.46539 * 60.00374 * 4 3 2 28 28 H 1.08993 * 109.47139 * 300.00457 * 4 3 2 29 29 H 1.09000 * 109.47219 * 179.97438 * 5 4 3 30 30 H 1.09007 * 109.46684 * 60.00427 * 5 4 3 31 31 H 1.09002 * 109.46606 * 299.99432 * 6 5 4 32 32 H 1.08997 * 109.47286 * 54.99637 * 7 6 5 33 33 H 1.08997 * 109.46848 * 294.99735 * 7 6 5 34 34 H 0.97006 * 119.99899 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.47009 * 184.99894 * 19 9 8 36 36 H 1.08995 * 109.47158 * 305.00200 * 19 9 8 37 37 H 1.08997 * 109.46949 * 60.00920 * 21 6 5 38 38 H 1.09006 * 109.46667 * 179.97438 * 21 6 5 39 39 H 1.08994 * 109.47113 * 300.00049 * 22 3 2 40 40 H 1.09004 * 109.46765 * 60.00165 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2633 0.7213 5 6 3.9815 2.6609 0.7207 6 6 4.1889 3.1263 -0.7219 7 6 4.8109 4.5241 -0.7224 8 8 5.1120 4.9110 -2.0646 9 6 5.6996 6.2088 -2.1775 10 1 6.2744 6.4268 -1.2774 11 6 6.6113 6.2447 -3.3769 12 1 6.7299 5.3648 -3.9917 13 6 7.2942 7.4010 -3.6893 14 7 7.1503 8.4724 -2.9404 15 14 8.4238 7.4459 -5.1764 16 1 8.4118 6.1210 -5.8473 17 1 7.9520 8.4861 -6.1253 18 1 9.8062 7.7657 -4.7384 19 6 4.5962 7.2555 -2.3441 20 17 3.5930 7.3147 -0.8471 21 6 2.8402 3.1684 -1.4431 22 6 2.2176 1.7714 -1.4425 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8901 26 1 1.3450 1.9994 0.5139 27 1 4.0241 0.5694 0.2074 28 1 3.2111 0.9313 1.7489 29 1 4.9421 2.6309 1.2350 30 1 3.3163 3.3551 1.2344 31 1 4.8541 2.4321 -1.2355 32 1 5.7276 4.5141 -0.1328 33 1 4.1076 5.2348 -0.2884 34 1 7.6304 9.2861 -3.1604 35 1 5.0460 8.2329 -2.5190 36 1 3.9669 6.9881 -3.1929 37 1 2.1751 3.8627 -0.9295 38 1 2.9880 3.5005 -2.4708 39 1 2.8828 1.0775 -1.9563 40 1 1.2567 1.8015 -1.9563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224842270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:05 Heat of formation + Delta-G solvation = -150.644650 kcal Electronic energy + Delta-G solvation = -20060.847848 eV Core-core repulsion = 16899.690126 eV Total energy + Delta-G solvation = -3161.157722 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.38584 -38.96010 -37.39888 -36.41039 -35.15103 -32.21692 -31.75536 -30.55829 -27.62853 -27.20828 -25.69607 -23.66595 -22.74152 -22.13140 -20.81610 -18.64293 -17.63869 -17.54359 -16.77422 -16.51748 -16.21744 -15.96376 -15.59042 -14.90111 -14.81086 -14.71275 -14.14810 -13.95496 -13.78974 -13.43506 -13.17739 -13.07639 -12.92785 -12.76828 -12.62258 -12.44403 -12.19967 -12.05569 -12.00710 -11.77941 -11.44800 -11.30675 -11.21793 -11.18101 -11.04322 -10.57163 -10.34911 -9.79329 -8.31378 -6.45797 1.39503 1.43601 1.56418 1.64175 2.34545 2.81752 2.99509 3.19199 3.73890 3.82642 4.00611 4.15807 4.29813 4.35450 4.44195 4.48340 4.50601 4.55208 4.55612 4.59063 4.62134 4.79052 4.79339 4.86008 4.95836 4.99355 5.01439 5.13290 5.18504 5.22898 5.27563 5.38345 5.48063 5.52994 5.61425 5.98794 6.31592 6.50998 6.86259 7.27798 8.75373 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.004119 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.713522 B = 6796.309864 C = 7281.658649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.090 3.910 4 C -0.107 4.107 5 C -0.103 4.103 6 C -0.080 4.080 7 C 0.049 3.951 8 O -0.398 6.398 9 C 0.220 3.780 10 H 0.003 0.997 11 C -0.541 4.541 12 H 0.061 0.939 13 C 0.021 3.979 14 N -0.913 5.913 15 Si 0.974 3.026 16 H -0.269 1.269 17 H -0.272 1.272 18 H -0.276 1.276 19 C -0.020 4.020 20 Cl -0.226 7.226 21 C -0.100 4.100 22 C -0.132 4.132 23 H 0.044 0.956 24 H 0.097 0.903 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.063 0.937 34 H 0.273 0.727 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.410 -10.851 6.208 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.033 3.967 4 C -0.145 4.145 5 C -0.141 4.141 6 C -0.099 4.099 7 C -0.027 4.027 8 O -0.318 6.318 9 C 0.163 3.837 10 H 0.020 0.980 11 C -0.579 4.579 12 H 0.080 0.920 13 C -0.179 4.179 14 N -0.551 5.551 15 Si 0.798 3.202 16 H -0.193 1.193 17 H -0.197 1.197 18 H -0.201 1.201 19 C -0.083 4.083 20 Cl -0.200 7.200 21 C -0.137 4.137 22 C -0.170 4.170 23 H 0.062 0.938 24 H 0.116 0.884 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.358 -10.941 6.179 16.284 hybrid contribution 0.504 0.826 -0.539 1.108 sum -9.854 -10.115 5.640 15.206 Atomic orbital electron populations 1.22955 0.79978 1.03675 1.00603 1.87865 1.21074 1.28440 1.95181 1.22190 0.95218 0.84116 0.95217 1.21507 0.94997 0.96812 1.01169 1.21433 1.01699 0.96267 0.94662 1.21127 0.96865 0.94543 0.97333 1.22928 0.98360 0.96934 0.84508 1.87803 1.81879 1.35304 1.26849 1.19709 0.88642 0.79026 0.96326 0.97957 1.21357 1.25678 0.98655 1.12216 0.92035 1.25752 0.97748 0.94572 0.99823 1.69913 1.42919 1.02744 1.39504 0.85252 0.78106 0.78414 0.78409 1.19346 1.19749 1.20100 1.25473 0.92841 1.05698 0.84329 1.98588 1.75627 1.98652 1.47176 1.21342 0.95460 0.96406 1.00529 1.21955 1.01117 0.96428 0.97487 0.93758 0.88445 0.93149 0.91349 0.91622 0.90008 0.90597 0.91063 0.91735 0.95498 0.91872 0.91777 0.87380 0.90935 0.91991 0.92864 0.92041 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.61 16 2 O -0.41 -9.14 10.35 -148.98 -1.54 -10.68 16 3 C 0.09 1.97 2.61 30.60 0.08 2.05 16 4 C -0.11 -2.30 5.57 30.60 0.17 -2.13 16 5 C -0.10 -2.44 5.20 30.59 0.16 -2.28 16 6 C -0.08 -2.44 2.43 -10.79 -0.03 -2.46 16 7 C 0.05 1.87 4.92 71.98 0.35 2.23 16 8 O -0.40 -18.58 9.49 -148.98 -1.41 -20.00 16 9 C 0.22 11.21 2.38 29.85 0.07 11.28 16 10 H 0.00 0.15 7.79 -2.39 -0.02 0.13 16 11 C -0.54 -29.57 8.89 25.60 0.23 -29.34 16 12 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 13 C 0.02 1.12 5.29 84.66 0.45 1.57 16 14 N -0.91 -49.23 11.30 21.45 0.24 -48.98 16 15 Si 0.97 41.68 29.54 68.60 2.03 43.70 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 18 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 19 C -0.02 -0.96 6.17 71.98 0.44 -0.52 16 20 Cl -0.23 -9.13 26.09 -2.72 -0.07 -9.20 16 21 C -0.10 -2.88 5.10 30.58 0.16 -2.73 16 22 C -0.13 -3.22 5.53 30.58 0.17 -3.05 16 23 H 0.04 0.66 7.87 -2.39 -0.02 0.64 16 24 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 0.68 8.09 -2.38 -0.02 0.66 16 26 H 0.07 1.37 7.79 -2.39 -0.02 1.35 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.03 1.04 8.09 -2.39 -0.02 1.02 16 33 H 0.06 2.37 5.09 -2.39 -0.01 2.36 16 34 H 0.27 13.79 8.31 -92.70 -0.77 13.02 16 35 H 0.11 5.52 5.96 -2.39 -0.01 5.50 16 36 H 0.07 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.05 1.78 7.82 -2.38 -0.02 1.77 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.52 7.87 -2.38 -0.02 1.51 16 Total: -1.00 -57.16 328.74 3.72 -53.44 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.99 Total: 15.48 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 3.48 Total: -23.77 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.24 Total: -48.98 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -2.96 Total: -30.67 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 17 Polarization: -9.13 SS G_CDS: -0.07 Total: -9.20 kcal Total: -57.16 3.72 -53.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224842270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.200 kcal (2) G-P(sol) polarization free energy of solvation -57.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds