Wall clock time and date at job start Mon Mar 30 2020 20:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00112 * 2 1 4 4 H 1.09000 * 109.62864 * 330.39402 * 3 2 1 5 5 C 1.53015 * 109.79102 * 90.87572 * 3 2 1 6 6 C 1.50095 * 110.19168 * 169.36348 * 5 3 2 7 7 C 1.31675 * 123.77423 * 343.32018 * 6 5 3 8 8 C 1.47242 * 118.11003 * 180.13973 * 7 6 5 9 9 C 1.40199 * 119.91602 * 104.75741 * 8 7 6 10 10 C 1.36132 * 120.11543 * 180.02562 * 9 8 7 11 11 C 1.41029 * 119.95455 * 359.97438 * 10 9 8 12 12 C 1.40933 * 120.08089 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00286 * 204.81837 * 12 11 10 14 14 C 1.40020 * 119.99925 * 24.82624 * 12 11 10 15 15 N 1.30791 * 120.00069 * 18.02368 * 14 12 11 16 16 Si 1.86797 * 119.99754 * 198.03040 * 14 12 11 17 17 H 1.48496 * 109.47371 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47171 * 119.99966 * 16 14 12 19 19 H 1.48507 * 109.46975 * 239.99505 * 16 14 12 20 20 C 1.40910 * 119.84055 * 0.02562 * 11 10 9 21 21 C 1.36404 * 119.87605 * 359.97438 * 20 11 10 22 22 F 1.35105 * 119.97079 * 180.02562 * 21 20 11 23 23 C 1.50096 * 123.77864 * 359.85954 * 7 6 5 24 24 C 1.53009 * 110.13313 * 343.11198 * 23 7 6 25 25 H 1.09001 * 109.47068 * 59.99764 * 1 2 3 26 26 H 1.09003 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47375 * 300.00062 * 1 2 3 28 28 H 1.08998 * 109.36299 * 289.77773 * 5 3 2 29 29 H 1.09004 * 109.35713 * 49.50823 * 5 3 2 30 30 H 1.07993 * 118.11058 * 163.04141 * 6 5 3 31 31 H 1.07995 * 119.94044 * 0.02562 * 9 8 7 32 32 H 1.07999 * 120.01868 * 180.25649 * 10 9 8 33 33 H 0.96999 * 120.00275 * 180.02562 * 15 14 12 34 34 H 1.07998 * 120.06321 * 180.02562 * 20 11 10 35 35 H 1.09004 * 109.35796 * 103.31249 * 23 7 6 36 36 H 1.08993 * 109.36307 * 222.90511 * 23 7 6 37 37 H 1.08998 * 109.63184 * 169.47261 * 24 23 7 38 38 H 1.08997 * 109.63078 * 289.85899 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3437 2.0031 -0.5072 5 6 2.2411 1.7698 1.4396 6 6 3.0801 3.0143 1.4543 7 6 3.7964 3.4264 0.4292 8 6 4.5771 4.6654 0.5816 9 6 5.9671 4.5995 0.7525 10 6 6.6928 5.7424 0.8944 11 6 6.0456 6.9952 0.8689 12 6 6.7943 8.1801 1.0161 13 1 6.3208 9.0748 1.3926 14 6 8.1520 8.1975 0.6741 15 7 8.6447 7.2611 -0.0947 16 14 9.2594 9.5579 1.3159 17 1 8.4645 10.4874 2.1581 18 1 10.3521 8.9649 2.1281 19 1 9.8421 10.3033 0.1712 20 6 4.6485 7.0593 0.6971 21 6 3.9279 5.9098 0.5556 22 9 2.5883 5.9691 0.3902 23 6 3.8676 2.7026 -0.8838 24 6 3.3626 1.2674 -0.7222 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.2801 1.9732 1.9122 29 1 2.7575 0.9859 1.9936 30 1 3.0936 3.6082 2.3562 31 1 6.4629 3.6402 0.7716 32 1 7.7640 5.6900 1.0218 33 1 9.5853 7.2729 -0.3314 34 1 4.1493 8.0167 0.6767 35 1 3.2506 3.2224 -1.6169 36 1 4.9006 2.6852 -1.2313 37 1 3.2408 0.8093 -1.7037 38 1 4.0781 0.6913 -0.1355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243804635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:24 Heat of formation + Delta-G solvation = -80.469682 kcal Electronic energy + Delta-G solvation = -20798.857029 eV Core-core repulsion = 17519.714866 eV Total energy + Delta-G solvation = -3279.142163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.73695 -39.11580 -37.59967 -36.13479 -33.76387 -31.23436 -30.49375 -29.23759 -28.45120 -26.63041 -24.93897 -22.89257 -21.97952 -21.06513 -20.57505 -17.72807 -17.63733 -16.68739 -15.81875 -15.41548 -15.16900 -15.08104 -14.79659 -14.49811 -14.34778 -13.60939 -13.24462 -13.09907 -12.92049 -12.60571 -12.35310 -12.14598 -12.09096 -11.93790 -11.60154 -11.29434 -11.13492 -10.99469 -10.83049 -10.50704 -10.39589 -10.34833 -10.05017 -9.54942 -9.40594 -9.29707 -8.21947 -7.63454 -7.29860 -6.97665 -4.55231 2.44493 2.76337 2.85572 2.98222 3.03309 3.06707 3.74426 3.79089 4.38748 4.91400 4.94559 5.19196 5.26307 5.30627 5.40970 5.51155 5.57595 5.59369 5.64646 5.68143 5.77875 5.98100 6.02329 6.11398 6.18690 6.23294 6.40328 6.44573 6.79567 6.82309 6.88076 7.05304 7.10605 7.22131 7.47685 7.50098 7.63880 7.87131 7.89261 8.07715 8.44186 8.66984 8.75496 9.96062 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.042191 B = 0.003755 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.495734 B = 7455.103966 C = 7794.654839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.088 3.912 4 H 0.062 0.938 5 C -0.099 4.099 6 C -0.175 4.175 7 C -0.034 4.034 8 C -0.236 4.236 9 C -0.060 4.060 10 C -0.176 4.176 11 C 0.134 3.866 12 C -0.450 4.450 13 H 0.083 0.917 14 C 0.076 3.924 15 N -0.779 5.779 16 Si 0.912 3.088 17 H -0.258 1.258 18 H -0.269 1.269 19 H -0.272 1.272 20 C -0.268 4.268 21 C 0.136 3.864 22 F -0.165 7.165 23 C -0.078 4.078 24 C -0.112 4.112 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.284 0.716 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.121 -8.474 -0.030 11.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.031 3.969 4 H 0.080 0.920 5 C -0.136 4.136 6 C -0.193 4.193 7 C -0.034 4.034 8 C -0.238 4.238 9 C -0.078 4.078 10 C -0.195 4.195 11 C 0.131 3.869 12 C -0.478 4.478 13 H 0.101 0.899 14 C -0.144 4.144 15 N -0.403 5.403 16 Si 0.736 3.264 17 H -0.182 1.182 18 H -0.194 1.194 19 H -0.198 1.198 20 C -0.289 4.289 21 C 0.117 3.883 22 F -0.144 7.144 23 C -0.115 4.115 24 C -0.150 4.150 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.832 -8.695 -0.164 11.059 hybrid contribution 0.117 0.958 0.208 0.988 sum -6.715 -7.737 0.044 10.244 Atomic orbital electron populations 1.22746 0.81594 1.02266 0.99937 1.87885 1.19261 1.28446 1.95110 1.22242 0.95050 0.83718 0.95934 0.91959 1.20799 0.99363 0.96618 0.96801 1.22263 1.00362 0.97654 0.99030 1.19493 0.95733 0.94257 0.93924 1.18142 0.93678 0.89899 1.22127 1.20306 0.91465 0.97394 0.98674 1.21032 1.00075 0.91267 1.07118 1.17425 0.89895 0.93415 0.86181 1.19644 0.93672 0.97522 1.36977 0.89899 1.26011 0.98841 0.97065 0.92524 1.69811 1.15583 1.31295 1.23568 0.86191 0.79728 0.80822 0.79683 1.18176 1.19446 1.19767 1.20603 0.95471 0.95299 1.17500 1.17276 0.75318 0.94192 1.01532 1.91332 1.32142 1.97474 1.93485 1.20431 1.02040 0.93131 0.95936 1.21662 0.95377 0.97462 1.00457 0.94201 0.89981 0.94159 0.91795 0.90637 0.87809 0.88532 0.85996 0.90451 0.87843 0.91068 0.90231 0.91344 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.83 101.05 1.09 1.41 16 2 O -0.39 -5.17 10.37 -35.23 -0.37 -5.54 16 3 C 0.09 1.21 2.65 -26.54 -0.07 1.14 16 4 H 0.06 0.86 7.77 -51.93 -0.40 0.45 16 5 C -0.10 -1.41 5.76 -28.17 -0.16 -1.57 16 6 C -0.17 -3.03 9.49 -36.47 -0.35 -3.38 16 7 C -0.03 -0.64 4.83 -103.13 -0.50 -1.13 16 8 C -0.24 -5.23 5.06 -104.70 -0.53 -5.76 16 9 C -0.06 -1.35 9.71 -39.60 -0.38 -1.74 16 10 C -0.18 -4.36 8.63 -39.28 -0.34 -4.70 16 11 C 0.13 3.45 5.57 -106.81 -0.60 2.86 16 12 C -0.45 -11.40 9.02 -37.89 -0.34 -11.75 16 13 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 14 C 0.08 1.80 5.13 -17.33 -0.09 1.71 16 15 N -0.78 -18.98 10.96 55.55 0.61 -18.37 16 16 Si 0.91 17.62 29.60 -169.99 -5.03 12.59 16 17 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 18 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 20 C -0.27 -6.64 9.70 -39.23 -0.38 -7.03 16 21 C 0.14 3.20 7.22 -39.44 -0.28 2.92 16 22 F -0.17 -3.74 16.81 2.25 0.04 -3.70 16 23 C -0.08 -1.26 5.79 -28.17 -0.16 -1.42 16 24 C -0.11 -1.56 5.65 -26.54 -0.15 -1.71 16 25 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.10 1.90 7.95 -52.49 -0.42 1.48 16 31 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 32 H 0.12 3.08 6.15 -52.49 -0.32 2.76 16 33 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 34 H 0.10 2.45 8.06 -52.49 -0.42 2.03 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 LS Contribution 321.50 15.07 4.84 4.84 Total: -1.00 -26.38 321.50 -8.48 -34.87 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.34 Total: 5.46 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -3.24 Total: -30.15 kcal Atomic # 7 Polarization: -18.98 SS G_CDS: 0.61 Total: -18.37 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.37 Total: -5.54 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.04 Total: -3.70 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.38 -8.48 -34.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243804635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.602 kcal (2) G-P(sol) polarization free energy of solvation -26.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds