Wall clock time and date at job start Mon Mar 30 2020 20:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00112 * 2 1 4 4 H 1.09000 * 109.62864 * 330.39402 * 3 2 1 5 5 C 1.53015 * 109.79102 * 90.87572 * 3 2 1 6 6 C 1.50095 * 110.19168 * 169.36348 * 5 3 2 7 7 C 1.31675 * 123.77423 * 343.32018 * 6 5 3 8 8 C 1.47242 * 118.11003 * 180.13973 * 7 6 5 9 9 C 1.40199 * 119.91602 * 104.75741 * 8 7 6 10 10 C 1.36132 * 120.11543 * 180.02562 * 9 8 7 11 11 C 1.41029 * 119.95455 * 359.97438 * 10 9 8 12 12 C 1.40933 * 120.08089 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00286 * 204.81837 * 12 11 10 14 14 C 1.40020 * 119.99925 * 24.82624 * 12 11 10 15 15 N 1.30791 * 120.00069 * 18.02368 * 14 12 11 16 16 Si 1.86797 * 119.99754 * 198.03040 * 14 12 11 17 17 H 1.48496 * 109.47371 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47171 * 119.99966 * 16 14 12 19 19 H 1.48507 * 109.46975 * 239.99505 * 16 14 12 20 20 C 1.40910 * 119.84055 * 0.02562 * 11 10 9 21 21 C 1.36404 * 119.87605 * 359.97438 * 20 11 10 22 22 F 1.35105 * 119.97079 * 180.02562 * 21 20 11 23 23 C 1.50096 * 123.77864 * 359.85954 * 7 6 5 24 24 C 1.53009 * 110.13313 * 343.11198 * 23 7 6 25 25 H 1.09001 * 109.47068 * 59.99764 * 1 2 3 26 26 H 1.09003 * 109.47318 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47375 * 300.00062 * 1 2 3 28 28 H 1.08998 * 109.36299 * 289.77773 * 5 3 2 29 29 H 1.09004 * 109.35713 * 49.50823 * 5 3 2 30 30 H 1.07993 * 118.11058 * 163.04141 * 6 5 3 31 31 H 1.07995 * 119.94044 * 0.02562 * 9 8 7 32 32 H 1.07999 * 120.01868 * 180.25649 * 10 9 8 33 33 H 0.96999 * 120.00275 * 180.02562 * 15 14 12 34 34 H 1.07998 * 120.06321 * 180.02562 * 20 11 10 35 35 H 1.09004 * 109.35796 * 103.31249 * 23 7 6 36 36 H 1.08993 * 109.36307 * 222.90511 * 23 7 6 37 37 H 1.08998 * 109.63184 * 169.47261 * 24 23 7 38 38 H 1.08997 * 109.63078 * 289.85899 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3437 2.0031 -0.5072 5 6 2.2411 1.7698 1.4396 6 6 3.0801 3.0143 1.4543 7 6 3.7964 3.4264 0.4292 8 6 4.5771 4.6654 0.5816 9 6 5.9671 4.5995 0.7525 10 6 6.6928 5.7424 0.8944 11 6 6.0456 6.9952 0.8689 12 6 6.7943 8.1801 1.0161 13 1 6.3208 9.0748 1.3926 14 6 8.1520 8.1975 0.6741 15 7 8.6447 7.2611 -0.0947 16 14 9.2594 9.5579 1.3159 17 1 8.4645 10.4874 2.1581 18 1 10.3521 8.9649 2.1281 19 1 9.8421 10.3033 0.1712 20 6 4.6485 7.0593 0.6971 21 6 3.9279 5.9098 0.5556 22 9 2.5883 5.9691 0.3902 23 6 3.8676 2.7026 -0.8838 24 6 3.3626 1.2674 -0.7222 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.2801 1.9732 1.9122 29 1 2.7575 0.9859 1.9936 30 1 3.0936 3.6082 2.3562 31 1 6.4629 3.6402 0.7716 32 1 7.7640 5.6900 1.0218 33 1 9.5853 7.2729 -0.3314 34 1 4.1493 8.0167 0.6767 35 1 3.2506 3.2224 -1.6169 36 1 4.9006 2.6852 -1.2313 37 1 3.2408 0.8093 -1.7037 38 1 4.0781 0.6913 -0.1355 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243804635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:23 Heat of formation + Delta-G solvation = -91.828671 kcal Electronic energy + Delta-G solvation = -20799.349592 eV Core-core repulsion = 17519.714866 eV Total energy + Delta-G solvation = -3279.634726 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.59262 -40.33591 -39.24203 -37.42965 -35.51463 -32.78915 -31.75056 -31.02233 -30.07276 -27.66093 -26.51842 -24.12761 -23.42277 -22.93457 -22.10317 -19.59498 -18.96687 -17.83875 -17.39805 -16.96947 -16.85940 -16.49982 -16.34036 -16.07356 -15.58322 -15.05408 -14.74740 -14.39173 -14.20879 -14.13808 -14.02604 -13.72124 -13.31175 -13.21233 -13.02343 -12.82780 -12.81345 -12.34720 -12.31587 -11.95914 -11.86475 -11.68896 -11.57286 -11.22621 -11.07256 -10.44009 -9.71878 -9.46601 -9.15571 -8.76737 -6.46033 0.69433 0.92730 1.29337 1.39307 1.49284 1.54745 2.17523 2.57816 2.79678 3.51942 3.76195 3.78890 3.83433 4.01438 4.26836 4.33518 4.36797 4.41287 4.52714 4.55348 4.61321 4.75516 4.83421 4.89407 4.91258 4.92938 4.95892 5.03920 5.05405 5.14465 5.22609 5.27504 5.55617 5.61649 5.78643 5.98021 6.01889 6.12005 6.22301 6.28800 6.55239 6.78458 6.86122 8.20297 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.042191 B = 0.003755 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.495734 B = 7455.103966 C = 7794.654839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.400 6.400 3 C 0.091 3.909 4 H 0.063 0.937 5 C -0.095 4.095 6 C -0.159 4.159 7 C -0.059 4.059 8 C -0.226 4.226 9 C -0.060 4.060 10 C -0.191 4.191 11 C 0.108 3.892 12 C -0.485 4.485 13 H 0.080 0.920 14 C 0.039 3.961 15 N -0.807 5.807 16 Si 0.987 3.013 17 H -0.259 1.259 18 H -0.260 1.260 19 H -0.264 1.264 20 C -0.288 4.288 21 C 0.124 3.876 22 F -0.161 7.161 23 C -0.073 4.073 24 C -0.106 4.106 25 H 0.047 0.953 26 H 0.101 0.899 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.295 0.705 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 -9.728 0.025 12.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.034 3.966 4 H 0.081 0.919 5 C -0.132 4.132 6 C -0.177 4.177 7 C -0.059 4.059 8 C -0.227 4.227 9 C -0.079 4.079 10 C -0.211 4.211 11 C 0.105 3.895 12 C -0.512 4.512 13 H 0.098 0.902 14 C -0.179 4.179 15 N -0.431 5.431 16 Si 0.807 3.193 17 H -0.182 1.182 18 H -0.185 1.185 19 H -0.188 1.188 20 C -0.308 4.308 21 C 0.105 3.895 22 F -0.140 7.140 23 C -0.110 4.110 24 C -0.143 4.143 25 H 0.065 0.935 26 H 0.119 0.881 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.215 -9.967 -0.116 12.305 hybrid contribution 0.115 1.258 0.204 1.279 sum -7.100 -8.709 0.088 11.237 Atomic orbital electron populations 1.22981 0.79864 1.03845 1.00617 1.87864 1.21155 1.27779 1.95147 1.22130 0.95062 0.84218 0.95216 0.91916 1.20809 0.99481 0.95110 0.97811 1.22404 0.99286 0.98238 0.97796 1.19565 0.96749 0.93701 0.95912 1.18501 0.93804 0.90940 1.19502 1.20564 0.91874 0.97718 0.97703 1.21041 0.99841 0.91826 1.08375 1.17723 0.90484 0.94233 0.87065 1.19878 0.95173 0.97522 1.38668 0.90164 1.26840 0.99482 0.99538 0.92034 1.69831 1.16542 1.32824 1.23912 0.85082 0.77520 0.77575 0.79140 1.18218 1.18463 1.18818 1.20720 0.95588 0.95899 1.18600 1.17436 0.75607 0.94599 1.01882 1.91329 1.31691 1.97491 1.93466 1.20366 1.02050 0.94341 0.94245 1.21595 0.95477 0.95735 1.01499 0.93461 0.88054 0.93551 0.90269 0.89779 0.89185 0.86263 0.86921 0.89407 0.87932 0.91151 0.90579 0.89740 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.83 113.37 1.23 1.62 16 2 O -0.40 -9.46 10.37 -148.98 -1.55 -11.00 16 3 C 0.09 2.28 2.65 30.72 0.08 2.36 16 4 H 0.06 1.56 7.77 -2.39 -0.02 1.54 16 5 C -0.10 -2.48 5.76 29.66 0.17 -2.31 16 6 C -0.16 -5.27 9.49 24.83 0.24 -5.04 16 7 C -0.06 -2.15 4.83 -18.35 -0.09 -2.24 16 8 C -0.23 -9.98 5.06 -19.91 -0.10 -10.08 16 9 C -0.06 -2.74 9.71 22.26 0.22 -2.52 16 10 C -0.19 -9.76 8.63 22.46 0.19 -9.56 16 11 C 0.11 5.76 5.57 -21.28 -0.12 5.64 16 12 C -0.48 -25.35 9.02 23.36 0.21 -25.14 16 13 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 14 C 0.04 1.86 5.13 85.28 0.44 2.29 16 15 N -0.81 -39.81 10.96 21.84 0.24 -39.58 16 16 Si 0.99 36.06 29.60 68.60 2.03 38.10 16 17 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 18 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 19 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 20 C -0.29 -14.75 9.70 22.50 0.22 -14.53 16 21 C 0.12 5.93 7.22 22.36 0.16 6.09 16 22 F -0.16 -7.29 16.81 44.97 0.76 -6.54 16 23 C -0.07 -2.24 5.79 29.66 0.17 -2.07 16 24 C -0.11 -2.68 5.65 30.72 0.17 -2.50 16 25 H 0.05 0.73 8.09 -2.39 -0.02 0.71 16 26 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.09 3.22 7.95 -2.91 -0.02 3.19 16 31 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 32 H 0.11 5.87 6.15 -2.91 -0.02 5.85 16 33 H 0.29 12.92 8.30 -92.71 -0.77 12.15 16 34 H 0.10 5.09 8.06 -2.91 -0.02 5.06 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 1.82 8.12 -2.39 -0.02 1.80 16 Total: -1.00 -56.89 321.50 5.72 -51.17 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 1.05 Total: 25.84 kcal Atomic # 6 Polarization: -61.19 SS G_CDS: 3.19 Total: -57.99 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.24 Total: -39.58 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -1.55 Total: -11.00 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 0.76 Total: -6.54 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 2.03 Total: 38.10 kcal Total: -56.89 5.72 -51.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243804635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.657 kcal (2) G-P(sol) polarization free energy of solvation -56.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds