Wall clock time and date at job start Mon Mar 30 2020 20:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99984 * 2 1 4 4 H 1.09005 * 109.62642 * 329.60147 * 3 2 1 5 5 C 1.53013 * 109.63378 * 89.99325 * 3 2 1 6 6 C 1.50081 * 110.13672 * 169.58175 * 5 3 2 7 7 C 1.31086 * 123.85909 * 342.84430 * 6 5 3 8 8 C 1.47832 * 118.07687 * 180.40625 * 7 6 5 9 9 C 1.39878 * 120.01082 * 115.00145 * 8 7 6 10 10 C 1.38578 * 120.33776 * 180.02562 * 9 8 7 11 11 F 1.35093 * 119.82954 * 180.02562 * 10 9 8 12 12 C 1.37959 * 120.34527 * 0.02562 * 10 9 8 13 13 C 1.40730 * 120.01200 * 0.02562 * 12 10 9 14 14 C 1.41428 * 120.16399 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00297 * 334.82740 * 14 13 12 16 16 C 1.39925 * 119.99905 * 154.83823 * 14 13 12 17 17 N 1.30836 * 119.99716 * 342.71108 * 16 14 13 18 18 Si 1.86802 * 120.00112 * 162.71857 * 16 14 13 19 19 H 1.48490 * 109.47352 * 59.99318 * 18 16 14 20 20 H 1.48498 * 109.47014 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46669 * 299.99149 * 18 16 14 22 22 C 1.38943 * 120.01041 * 295.02502 * 8 7 6 23 23 C 1.50087 * 123.84732 * 0.69328 * 7 6 5 24 24 C 1.53168 * 110.05570 * 342.39993 * 23 7 6 25 25 H 1.09000 * 109.46853 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47497 * 299.99965 * 1 2 3 27 27 H 1.09004 * 109.47276 * 60.00524 * 1 2 3 28 28 H 1.09003 * 109.35487 * 49.38102 * 5 3 2 29 29 H 1.08996 * 109.25033 * 289.72263 * 5 3 2 30 30 H 1.08001 * 118.07327 * 162.82081 * 6 5 3 31 31 H 1.08003 * 119.83304 * 0.02562 * 9 8 7 32 32 H 1.08000 * 119.99581 * 179.72111 * 12 10 9 33 33 H 0.96998 * 119.99905 * 180.02562 * 17 16 14 34 34 H 1.07999 * 120.17360 * 359.97438 * 22 8 7 35 35 H 1.09003 * 109.36617 * 102.78863 * 23 7 6 36 36 H 1.09007 * 109.36073 * 222.37183 * 23 7 6 37 37 H 1.09001 * 109.82993 * 290.29215 * 24 23 7 38 38 H 1.09002 * 109.73945 * 169.70789 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3501 2.0002 -0.5195 5 6 2.2192 1.7753 1.4412 6 6 3.0535 3.0227 1.4622 7 6 3.7864 3.4282 0.4539 8 6 4.5665 4.6733 0.6171 9 6 5.9645 4.6303 0.6007 10 6 6.7024 5.7933 0.7536 11 9 8.0521 5.7399 0.7357 12 6 6.0658 7.0053 0.9240 13 6 4.6599 7.0653 0.9438 14 6 4.0040 8.3060 1.1189 15 1 4.5067 9.1156 1.6269 16 6 2.7036 8.4844 0.6340 17 7 2.2190 7.6588 -0.2578 18 14 1.6597 9.9016 1.2597 19 1 2.3363 11.1875 0.9539 20 1 0.3327 9.8703 0.5940 21 1 1.4804 9.7734 2.7282 22 6 3.9111 5.8866 0.7872 23 6 3.8754 2.7058 -0.8587 24 6 3.3733 1.2673 -0.7017 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 2.7252 0.9926 2.0065 29 1 1.2503 1.9808 1.8962 30 1 3.0495 3.6217 2.3608 31 1 6.4715 3.6859 0.4683 32 1 6.6465 7.9075 1.0472 33 1 1.3177 7.7827 -0.5942 34 1 2.8318 5.9235 0.8003 35 1 3.2673 3.2255 -1.5992 36 1 4.9128 2.6901 -1.1930 37 1 4.0786 0.6930 -0.1010 38 1 3.2672 0.8052 -1.6833 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243813692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:48 Heat of formation + Delta-G solvation = -93.971809 kcal Electronic energy + Delta-G solvation = -20855.922140 eV Core-core repulsion = 17576.194481 eV Total energy + Delta-G solvation = -3279.727659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.127 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.63222 -40.45466 -39.20984 -37.34801 -35.50117 -32.90407 -31.81178 -31.12184 -29.32155 -27.38295 -27.25271 -24.18456 -23.65563 -22.86912 -21.98764 -19.66052 -18.67068 -17.79775 -17.37351 -16.99674 -16.65345 -16.46647 -16.32602 -16.20178 -15.85256 -15.37585 -14.65935 -14.60803 -14.26630 -14.13536 -13.98084 -13.52123 -13.28958 -13.19124 -12.90545 -12.81131 -12.74193 -12.34671 -12.28712 -12.08627 -11.92029 -11.78004 -11.56771 -11.22255 -11.05685 -10.44377 -9.91337 -9.38173 -9.10465 -8.72199 -6.48204 0.63452 0.82337 1.34393 1.38633 1.49353 1.53337 2.17960 2.58736 2.79408 3.49756 3.61141 3.79493 3.86689 4.02011 4.26262 4.30562 4.39259 4.43777 4.53140 4.55573 4.60443 4.68657 4.75712 4.88659 4.89692 4.91223 4.94181 5.02386 5.07797 5.11605 5.21482 5.27579 5.52847 5.62805 5.74321 5.90439 5.97092 6.07259 6.22623 6.28328 6.54945 6.81135 6.84146 8.24234 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.005648 C = 0.004237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.756757 B = 4956.316547 C = 6606.349096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.090 3.910 4 H 0.062 0.938 5 C -0.096 4.096 6 C -0.152 4.152 7 C -0.076 4.076 8 C -0.020 4.020 9 C -0.263 4.263 10 C 0.109 3.891 11 F -0.162 7.162 12 C -0.284 4.284 13 C 0.104 3.896 14 C -0.492 4.492 15 H 0.080 0.920 16 C 0.041 3.959 17 N -0.812 5.812 18 Si 0.983 3.017 19 H -0.260 1.260 20 H -0.264 1.264 21 H -0.260 1.260 22 C -0.171 4.171 23 C -0.071 4.071 24 C -0.104 4.104 25 H 0.101 0.899 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.293 0.707 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.175 -10.387 -0.188 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.032 3.968 4 H 0.080 0.920 5 C -0.133 4.133 6 C -0.170 4.170 7 C -0.077 4.077 8 C -0.021 4.021 9 C -0.283 4.283 10 C 0.090 3.910 11 F -0.141 7.141 12 C -0.304 4.304 13 C 0.101 3.899 14 C -0.521 4.521 15 H 0.098 0.902 16 C -0.176 4.176 17 N -0.437 5.437 18 Si 0.804 3.196 19 H -0.184 1.184 20 H -0.188 1.188 21 H -0.184 1.184 22 C -0.190 4.190 23 C -0.108 4.108 24 C -0.142 4.142 25 H 0.120 0.880 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.219 -10.601 -0.353 12.296 hybrid contribution -0.031 1.293 0.261 1.320 sum -6.250 -9.307 -0.092 11.212 Atomic orbital electron populations 1.22979 0.79886 1.03838 1.00612 1.87858 1.21117 1.27750 1.95150 1.22155 0.95159 0.84230 0.95224 0.91966 1.20829 0.99597 0.94940 0.97945 1.22243 0.98323 0.98343 0.98139 1.19784 0.97272 0.93901 0.96695 1.18795 0.91963 0.93276 0.98017 1.20533 0.93455 0.96051 1.18253 1.17547 0.75376 0.95288 1.02813 1.91338 1.30715 1.97503 1.94558 1.21086 0.95422 0.95458 1.18430 1.17657 0.90319 0.94175 0.87732 1.19834 0.99730 0.98501 1.34007 0.90213 1.26751 0.98405 1.00176 0.92287 1.69846 1.17520 1.36166 1.20139 0.85225 0.77129 0.77684 0.79602 1.18407 1.18840 1.18381 1.21487 0.99420 0.90633 1.07497 1.20357 1.02360 0.94331 0.93775 1.21616 0.95297 0.95530 1.01730 0.88022 0.93555 0.93528 0.89465 0.90173 0.88797 0.86015 0.87800 0.89653 0.86851 0.90892 0.90279 0.90838 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.83 113.37 1.23 1.63 16 2 O -0.40 -9.52 10.37 -148.98 -1.55 -11.07 16 3 C 0.09 2.26 2.64 30.72 0.08 2.34 16 4 H 0.06 1.59 7.78 -2.38 -0.02 1.57 16 5 C -0.10 -2.52 5.74 29.66 0.17 -2.35 16 6 C -0.15 -5.09 9.35 25.37 0.24 -4.85 16 7 C -0.08 -2.81 5.24 -17.64 -0.09 -2.90 16 8 C -0.02 -0.90 5.09 -20.17 -0.10 -1.01 16 9 C -0.26 -11.86 9.59 22.75 0.22 -11.65 16 10 C 0.11 5.23 7.27 22.28 0.16 5.40 16 11 F -0.16 -7.33 17.26 44.97 0.78 -6.55 16 12 C -0.28 -14.59 9.76 22.81 0.22 -14.36 16 13 C 0.10 5.58 5.57 -21.33 -0.12 5.46 16 14 C -0.49 -25.93 9.05 23.46 0.21 -25.72 16 15 H 0.08 4.05 7.90 -2.91 -0.02 4.03 16 16 C 0.04 1.97 5.14 85.25 0.44 2.41 16 17 N -0.81 -40.40 10.96 21.82 0.24 -40.16 16 18 Si 0.98 36.45 29.59 68.60 2.03 38.48 16 19 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 20 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 21 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 22 C -0.17 -8.72 8.29 23.00 0.19 -8.53 16 23 C -0.07 -2.18 5.79 29.71 0.17 -2.01 16 24 C -0.10 -2.62 5.68 30.77 0.17 -2.45 16 25 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.75 8.09 -2.38 -0.02 0.73 16 28 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 3.38 7.94 -2.91 -0.02 3.36 16 31 H 0.12 4.90 8.06 -2.91 -0.02 4.87 16 32 H 0.10 5.15 8.06 -2.91 -0.02 5.13 16 33 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 34 H 0.11 5.97 6.18 -2.91 -0.02 5.95 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.08 2.40 7.99 -2.38 -0.02 2.38 16 37 H 0.07 1.82 8.12 -2.39 -0.02 1.80 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -57.17 321.79 5.74 -51.42 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 1.05 Total: 26.48 kcal Atomic # 6 Polarization: -61.79 SS G_CDS: 3.19 Total: -58.60 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.24 Total: -40.16 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -1.55 Total: -11.07 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.78 Total: -6.55 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Total: -57.17 5.74 -51.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243813692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.547 kcal (2) G-P(sol) polarization free energy of solvation -57.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds