Wall clock time and date at job start Mon Mar 30 2020 20:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 113.99852 * 2 1 4 4 H 1.09001 * 109.79534 * 29.49881 * 3 2 1 5 5 C 1.53014 * 109.63371 * 269.00154 * 3 2 1 6 6 C 1.50090 * 110.13905 * 190.62326 * 5 3 2 7 7 C 1.31089 * 123.85312 * 17.15111 * 6 5 3 8 8 C 1.47835 * 118.07142 * 179.59327 * 7 6 5 9 9 C 1.39889 * 120.01010 * 244.72716 * 8 7 6 10 10 C 1.38569 * 120.32933 * 179.74562 * 9 8 7 11 11 F 1.35104 * 119.82362 * 180.27898 * 10 9 8 12 12 C 1.37960 * 120.35290 * 0.55226 * 10 9 8 13 13 C 1.40730 * 120.00676 * 359.70561 * 12 10 9 14 14 C 1.41431 * 120.16217 * 180.02562 * 13 12 10 15 15 H 1.08003 * 120.00422 * 24.47894 * 14 13 12 16 16 C 1.39923 * 119.99906 * 204.48042 * 14 13 12 17 17 N 1.30837 * 119.99743 * 17.90150 * 16 14 13 18 18 Si 1.86794 * 120.00237 * 197.90033 * 16 14 13 19 19 H 1.48505 * 109.46888 * 90.00001 * 18 16 14 20 20 H 1.48497 * 109.47428 * 209.99731 * 18 16 14 21 21 H 1.48497 * 109.47142 * 330.00288 * 18 16 14 22 22 C 1.38942 * 120.00883 * 65.00585 * 8 7 6 23 23 C 1.50087 * 123.85287 * 359.57919 * 7 6 5 24 24 C 1.53012 * 110.14085 * 17.15487 * 23 7 6 25 25 H 1.08996 * 109.47588 * 300.00407 * 1 2 3 26 26 H 1.09005 * 109.46914 * 60.00064 * 1 2 3 27 27 H 1.08997 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.36394 * 70.41464 * 5 3 2 29 29 H 1.09000 * 109.35403 * 310.82169 * 5 3 2 30 30 H 1.07993 * 118.07100 * 197.44221 * 6 5 3 31 31 H 1.07995 * 119.82945 * 0.02566 * 9 8 7 32 32 H 1.07997 * 120.00049 * 179.71779 * 12 10 9 33 33 H 0.97003 * 120.00055 * 180.02562 * 17 16 14 34 34 H 1.08000 * 120.17244 * 359.97438 * 22 8 7 35 35 H 1.08999 * 109.36042 * 137.36255 * 23 7 6 36 36 H 1.09000 * 109.35727 * 257.08524 * 23 7 6 37 37 H 1.08995 * 109.62904 * 70.02471 * 24 23 7 38 38 H 1.09003 * 109.63196 * 190.62334 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 2.0058 0.5050 5 6 2.2422 1.7650 -1.4410 6 6 3.0810 3.0095 -1.4578 7 6 3.8001 3.4193 -0.4412 8 6 4.5867 4.6607 -0.6010 9 6 5.9842 4.6140 -0.5577 10 6 6.7282 5.7728 -0.7120 11 9 8.0774 5.7150 -0.6741 12 6 6.0983 6.9860 -0.8984 13 6 4.6931 7.0506 -0.9390 14 6 4.0440 8.2924 -1.1305 15 1 4.5608 9.1012 -1.6258 16 6 2.7323 8.4734 -0.6782 17 7 2.2281 7.6559 0.2102 18 14 1.7011 9.8819 -1.3428 19 1 0.9594 9.4274 -2.5464 20 1 0.7359 10.3221 -0.3036 21 1 2.5880 11.0159 -1.7069 22 6 3.9381 5.8751 -0.7884 23 6 3.8715 2.7023 0.8754 24 6 3.3626 1.2674 0.7222 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.2819 1.9701 -1.9140 29 1 2.7539 0.9769 -1.9934 30 1 3.0890 3.6048 -2.3588 31 1 6.4857 3.6694 -0.4078 32 1 6.6837 7.8863 -1.0135 33 1 1.3186 7.7810 0.5235 34 1 2.8593 5.9153 -0.8182 35 1 4.9050 2.6842 1.2214 36 1 3.2551 3.2262 1.6060 37 1 4.0748 0.6870 0.1359 38 1 3.2396 0.8155 1.7065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243813693.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:51 Heat of formation + Delta-G solvation = -82.583303 kcal Electronic energy + Delta-G solvation = -20856.114235 eV Core-core repulsion = 17576.880419 eV Total energy + Delta-G solvation = -3279.233816 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.76079 -39.19834 -37.64417 -36.02748 -33.71086 -31.37551 -30.54145 -29.35067 -27.85210 -26.27954 -25.49930 -22.95776 -22.23794 -21.02031 -20.46513 -17.97902 -17.22643 -16.62516 -15.75727 -15.33102 -15.15829 -14.83500 -14.72837 -14.62689 -14.42148 -14.01123 -13.36320 -13.09721 -12.98286 -12.90300 -12.27606 -12.13055 -11.98753 -11.72645 -11.61286 -11.24723 -11.03256 -10.94830 -10.67811 -10.57250 -10.49927 -10.34427 -10.16168 -9.56138 -9.40997 -9.25947 -8.40162 -7.55110 -7.27430 -6.91352 -4.54410 2.36056 2.67315 2.90546 2.99987 3.03506 3.10952 3.75390 3.82479 4.40371 4.90569 4.94261 5.15467 5.28096 5.31453 5.40361 5.46555 5.54324 5.57429 5.60264 5.74228 5.81583 5.96623 6.01580 6.10787 6.19524 6.27448 6.35224 6.41349 6.61241 6.81098 6.94170 7.02476 7.10961 7.22509 7.43358 7.46304 7.57531 7.81170 7.88715 8.09083 8.44548 8.71121 8.74636 10.02534 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.005652 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.893178 B = 4952.404066 C = 6604.502076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.087 3.913 4 H 0.065 0.935 5 C -0.100 4.100 6 C -0.168 4.168 7 C -0.052 4.052 8 C -0.028 4.028 9 C -0.262 4.262 10 C 0.114 3.886 11 F -0.168 7.168 12 C -0.261 4.261 13 C 0.127 3.873 14 C -0.457 4.457 15 H 0.082 0.918 16 C 0.077 3.923 17 N -0.786 5.786 18 Si 0.911 3.089 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.151 4.151 23 C -0.077 4.077 24 C -0.112 4.112 25 H 0.040 0.960 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.283 0.717 34 H 0.126 0.874 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.818 -9.167 0.164 10.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C 0.030 3.970 4 H 0.083 0.917 5 C -0.137 4.137 6 C -0.187 4.187 7 C -0.052 4.052 8 C -0.029 4.029 9 C -0.282 4.282 10 C 0.095 3.905 11 F -0.147 7.147 12 C -0.282 4.282 13 C 0.125 3.875 14 C -0.486 4.486 15 H 0.100 0.900 16 C -0.142 4.142 17 N -0.410 5.410 18 Si 0.735 3.265 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.170 4.170 23 C -0.114 4.114 24 C -0.149 4.149 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.144 0.856 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.872 -9.358 0.320 10.555 hybrid contribution -0.476 0.973 -0.254 1.112 sum -5.348 -8.385 0.066 9.946 Atomic orbital electron populations 1.22751 0.81539 1.02265 1.00015 1.87882 1.19311 1.28396 1.95116 1.22258 0.95084 0.83835 0.95871 0.91711 1.20812 0.99491 0.96466 0.96925 1.22091 0.99563 0.97757 0.99242 1.19712 0.96336 0.94553 0.94625 1.18450 0.91612 0.92394 1.00438 1.20238 0.93175 0.95736 1.19043 1.17414 0.75007 0.95150 1.02894 1.91336 1.31304 1.97497 1.94598 1.20976 0.95498 0.94764 1.16919 1.17325 0.89698 0.93307 0.87204 1.19606 0.97356 0.98326 1.33288 0.89999 1.25936 0.98042 0.97489 0.92750 1.69822 1.15971 1.34881 1.20337 0.86259 0.79584 0.81143 0.79521 1.19118 1.20178 1.18452 1.21532 1.00026 0.89851 1.05625 1.20386 1.02199 0.93274 0.95572 1.21668 0.95408 0.97334 1.00540 0.94134 0.94119 0.89997 0.91567 0.90507 0.87370 0.88162 0.87831 0.90603 0.85628 0.90228 0.90491 0.91107 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.83 101.05 1.09 1.41 16 2 O -0.39 -5.18 10.36 -35.23 -0.37 -5.54 16 3 C 0.09 1.20 2.65 -26.53 -0.07 1.13 16 4 H 0.06 0.90 7.78 -51.93 -0.40 0.49 16 5 C -0.10 -1.42 5.75 -28.17 -0.16 -1.58 16 6 C -0.17 -2.90 9.35 -36.34 -0.34 -3.24 16 7 C -0.05 -0.98 5.24 -102.73 -0.54 -1.51 16 8 C -0.03 -0.64 5.10 -105.09 -0.54 -1.17 16 9 C -0.26 -5.92 9.57 -38.84 -0.37 -6.29 16 10 C 0.11 2.72 7.27 -39.56 -0.29 2.43 16 11 F -0.17 -3.81 17.26 2.25 0.04 -3.78 16 12 C -0.26 -6.50 9.76 -38.74 -0.38 -6.88 16 13 C 0.13 3.30 5.57 -106.88 -0.60 2.71 16 14 C -0.46 -11.68 9.05 -37.74 -0.34 -12.02 16 15 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 16 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 17 N -0.79 -19.30 10.96 55.55 0.61 -18.69 16 18 Si 0.91 17.87 29.59 -169.99 -5.03 12.84 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 C -0.15 -3.74 8.30 -38.46 -0.32 -4.06 16 23 C -0.08 -1.24 5.78 -28.17 -0.16 -1.40 16 24 C -0.11 -1.54 5.66 -26.53 -0.15 -1.69 16 25 H 0.04 0.38 8.09 -51.93 -0.42 -0.04 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.11 1.95 7.94 -52.49 -0.42 1.54 16 31 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.10 2.46 8.06 -52.49 -0.42 2.04 16 33 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 34 H 0.13 3.20 6.16 -52.49 -0.32 2.88 16 35 H 0.08 1.26 7.97 -51.93 -0.41 0.84 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 321.75 15.07 4.85 4.85 Total: -1.00 -26.54 321.75 -8.48 -35.02 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.33 Total: 5.72 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: -3.25 Total: -30.42 kcal Atomic # 7 Polarization: -19.30 SS G_CDS: 0.61 Total: -18.69 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.37 Total: -5.54 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.04 Total: -3.78 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.54 -8.48 -35.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243813693.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.568 kcal (2) G-P(sol) polarization free energy of solvation -26.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds